!!TEST!! D. O. G. Processsing

TEST PAGE for Derive One Gene Processing

This webform generates and displays positions of codons in a DNA sequence. Options to select different sets of the codons are given. They can be normilized to a whole percentage number so positions of a codon can be relativly determined in more than one protein. Please enter a fasta sequence to give a title to the graph.

Codons to highlight (default selected are dirty dozen and start codes ATG, TTG and GTG)
       

AT only TTT AAA ATT TAA TAT ATA TTA AAT
AT rich TTG TCT TTC TCA AGT TAG CTT CTA ATC ATG GTT GTA TAC ACT ACA TGT TGA CAT CAA AAC AAG GAT GAA AGA
GC rich GTC CTG TCC TCG CTC GTG CCT CCA ACC ACG GCT GCA TGC TGG CAC CAG GAC GAG CGT CGA AGC AGG GGT GGA
GC only CCC GGG CCG GGC CGC GCG GCC CGG

Options Duax lab options Help

(Select none)

Dirty Dozen
Dirty dozen codons are selected based on their lack of use in a evolutionary distant set of proteins.

Start codes (ATG, GTG, TTG)
selects 3 known start codes

Everything [AT]x[AT]
selects codons that start and end with a A or T nucleotide.

Everything but [GC]x[GC]
Codons that do not have the combination of a G or C in the starting and ending position.

Everything AT3
Codons that end in a A or a T.

Graph normalize sequence data to 100% (colors will not work with this option)
Reverse complement of sequence in text box

 
       

 

 

Website maintained by: Bobby Huether and Sanjay Connare - Questions?