NC_002645_HCoV-229E_inf-1_E_2475      ----MFLKLVDDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPI--
NC_005831_HCoV-NL63_AmsterdamI_E      ----MFLRLIDDNGIVLNSILWLLVMIFFFVLAMTFIKLIQLCFTCHYFFSRTLYQPV--
NC_002306_TGEV_PUR46-MAD_E_25857      MTFPRALTVIDDNGMVINIIFWFLLIIILILLSIALLNIIKLCMVCCNLGRTVIIVPA--
NC_003436_PEDV_CV777_E_25444..25      -----MLQLVNDNGLVVNVILWLFVLFFLLIISITFVQLVNLCFTCHRLCNSAVYTPI--
DQ811787_PRCV_ISU-1_E_24824..250      MTFPRALTVIDDNGMVISIIFWFLLIIILILLSIALLNIIKLCMVCCNLGRTVIIVPV--
AY994055_FIPV_79-1146_E_25954..2      MTFPRAFTIIDDHGMVVSVFFWLLLIIILILFSIALLNVIKLCMVCCNLGKTIIVLPA--
NC_009657_BtCoV-G1_BtCoV/512/200      -----MLQLVNDNGVVVNAILWLFVLFFVLVISITFVQLINLCFTCHRLCNNVVYKPV--
EF203064_Bat-CoV-HKU2_HKU2/GD/43      ----MFLKIVEDDGLFINTVLWLLVLILVLLVAITVIKLIQLCFSCHRLMSNTIYIPV--
NC_005147_HCoV-OC43_OC43_E_28133      -MFMADAYLADTVWYVGQIIFIVAICLLVTIVVVAFLATFKLCIQLCGMCNTLVLSPS--
NC_006577_CoV-HKU1A_N1_E_27373..      ---MVDLFFNDTAWYIGQILVLVLFCLISLIFVVAFLATIKLCMQLCGFCNFFIISPS--
AY884001_CoV-HKU1B_N2_E_27262..2      ---MVDVFFTDTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPS--
DQ339101_CoV-HKU1C_N5_E_27202..2      ---MVDVFFTDTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPS--
NC_003045_BCoV_BCoV-ENT_E_28422.      -MFMADAYFADTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPS--
NC_001846_MHV_MHV-A59_E_28706..2      ---MFNLFLTDTVWYVGQIIFIFAVCLMVTIIVVAFLASIKLCIQLCGLCNTLVLSPS--
NC_007732_PHEV_VW572_E_27872..28      -MFMADAYFADTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPS--
EF424621_AntelopeCoV_US/OH1/2003      ---MADAYFADTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPS--
EF424622_GiCoV_US/OH3-TC/2006_E_      -MFMADAYFADTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPS--
NC_004718_SARS-human_Tor2_E_2611      ---MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPT--
AY304488_SARS-civet_SZ16_E_26102      ---MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPT--
NC_009694_SARS-bat_HKU3-1_E_2605      ---MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPT--
AY545919_SARS-badger_CFB/SZ/94/0      ---MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPT--
NC_009019_Bat-CoV-HKU4_B04f           ---MLPFVHEQIGTIIVNFFILTVVCAITLVVCLAILTAIRLCVQCASGVNTLLFVPA--
NC_009020_Bat-CoV-HKU5_LMH3f          ---MLPFVQEQIGAFIVNFFILSVVCAVTLVVCLAILTAIRLCVQCVSGCHTLVFLPA--
NC_009021_Bat-CoV-HKU9_BF_005I        ---MYDIVGTNNSILIANVLVLIIICLLVVIVGCALLLILQFVFGVCGFVFKFVCKPT--
NC_001451_IBV_Beaudette_E_24207.      --MNLLNKSLEENGSFLTALYIIVGFLALYLLGRALQAFVQAADACCLFWYTWVVIPGAK
AY646283_IBV-partridge_Partridge      --MNILNKSLEENGSFLTALYVFLAFVALYLLGRALQAFVQAADACCLFWYTWVVVPGAK
AY641576_IBV-peafowl_Peafowl/GD/      -MMNLLNKSLEENGSFLTALYIFVGFLALYLLGRALQAFVQAADACCLFWYTWVVIPGAK
                                                :    .   .          :.  :.   ..            :  *   

NC_002645_HCoV-229E_inf-1_E_2475      ----KNVYH----IYQSYMHIDPF------------PKRVIDF-------
NC_005831_HCoV-NL63_AmsterdamI_E      ----YKIFL----AYQDYMQIAPV------------PAEVLNV-------
NC_002306_TGEV_PUR46-MAD_E_25857      ----QHAYD----AYKNFMRIKAYN-----------PDGALLA-------
NC_003436_PEDV_CV777_E_25444..25      ----GRLYR----VYKSYMRIDPL------------PSTVIDV-------
DQ811787_PRCV_ISU-1_E_24824..250      ----QHAYD----AYKNFMRIKAYN-----------PDGALLV-------
AY994055_FIPV_79-1146_E_25954..2      ----RHAYD----AYKTFMQTKAYN-----------PDEAFLV-------
NC_009657_BtCoV-G1_BtCoV/512/200      ----GKVYG----VYKSYMRIQPL------------TSDIIQV-------
EF203064_Bat-CoV-HKU2_HKU2/GD/43      ----YNAYL----VYKSYMEVE--------------PCPIINV-------
NC_005147_HCoV-OC43_OC43_E_28133      ----IYVFNRGRQFYEFYNDVKPP------------VLDVDDV-------
NC_006577_CoV-HKU1A_N1_E_27373..      ----AYVYKRGMQLYKSYSEQVIP------------PTSDYLI-------
AY884001_CoV-HKU1B_N2_E_27262..2      ----AYVYNRGRQLYKSYSEHVIP------------STLDDLI-------
DQ339101_CoV-HKU1C_N5_E_27202..2      ----AYVYNRGRQLYKSYSEHVIP------------STLDDLI-------
NC_003045_BCoV_BCoV-ENT_E_28422.      ----IYVFNRGRQFYEFYNDVKPP------------VLDVDDV-------
NC_001846_MHV_MHV-A59_E_28706..2      ----IYLYDRSKQLYKYYNEEMRLP-----------LLEVDDI-------
NC_007732_PHEV_VW572_E_27872..28      ----IYVFNRGRQFYEFYNEVKPP------------VLDVDDV-------
EF424621_AntelopeCoV_US/OH1/2003      ----IYVFNRGRQFYEFYNDVKPP------------VLDVDDV-------
EF424622_GiCoV_US/OH3-TC/2006_E_      ----IYVFNRGRQFYEFYNDVKPP------------VLDVDDV-------
NC_004718_SARS-human_Tor2_E_2611      ----VYVYSRVKNLNSSE------------------GVPDLLV-------
AY304488_SARS-civet_SZ16_E_26102      ----VYVYSRVKNLNSSE------------------GVPDLLV-------
NC_009694_SARS-bat_HKU3-1_E_2605      ----VYVYSRVKNLNSSE------------------GVPDLLV-------
AY545919_SARS-badger_CFB/SZ/94/0      ----VYVYSRVKNLNSSE------------------GVPDLLV-------
NC_009019_Bat-CoV-HKU4_B04f           ----FYIYNTGRNAYFKFQENRPPF-----------PPE-DWV-------
NC_009020_Bat-CoV-HKU5_LMH3f          ----VHIYNTGRAAYVKFQESHPPY-----------PPE-DWV-------
NC_009021_Bat-CoV-HKU9_BF_005I        ----ILVYN----KFRNESLLNERE-----------ELLCDNV-------
NC_001451_IBV_Beaudette_E_24207.      GTAFVYKYTYGRKLNNPELEAVIVNEFPKNGWNNKNPANFQDAQRDKLYS
AY646283_IBV-partridge_Partridge      GTAFVYKHTYGRKLNNPELEHVIVNEFPKNGWNNKSLPNFQDVQQDKLHP
AY641576_IBV-peafowl_Peafowl/GD/      GTAFVYKYTYGRKLNNPELEAVIVNEFPKNGWNNKNPANFQDVQRDKLYS
                                             .