NC_002645_HCoV-229E_inf-1_M_2499 ---------------------------------MSNDNC----------TGDIVTHLKNW NC_005831_HCoV-NL63_AmsterdamI_M -----------------------------------MSNS-------SVPLLEVYVHLRNW NC_002306_TGEV_PUR46-MAD_M_26116 MK-ILLILACVIACACGERYCAMKSDTDLSCRNSTASDC-----ESCFNGGDLIWHLANW NC_003436_PEDV_CV777_M_25682..26 -----------------------------------MSNG-------SIPVDEVIEHLRNW DQ811787_PRCV_ISU-1_M_25083..258 MK-ILLILACAIACACGERYCAMQ-ETGLSCRNSTVSDC-----ESCFNGGDLIWHLANW AY994055_FIPV_79-1146_M_26213..2 MKYILLILACIIACVYGERYCAMQ-DSGLQCINGTNSRC-----QTCFERGDLIWHLANW NC_009657_BtCoV-G1_BtCoV/512/200 ----------------------------------MSSNQ-------SVPVEEVIKHLRNW EF203064_Bat-CoV-HKU2_HKU2/GD/43 ----------------------------------MSSNS-----TESVPVTEVLEHLRNW NC_005147_HCoV-OC43_OC43_M_28402 ----------------------------------MSSKT-TPAPVYIWTADEAIKFLKEW NC_006577_CoV-HKU1A_N1_M_27633.. ----------------------------------MNKSF-----LPQFTSDQAVTFLKEW AY884001_CoV-HKU1B_N2_M_27522..2 ---------------------------------MNESIF------PHWNSDQAITFLKEW DQ339101_CoV-HKU1C_N5_M_27462..2 ---------------------------------MNESIF------PHWNSDQAITFLKEW NC_003045_BCoV_BCoV-ENT_M_28691. ----------------------------------MSSVT-TPAPVYTWTADEAIKFLKEW NC_001846_MHV_MHV-A59_M_28968..2 ----------------------------------MSSTTQAPEPVYQWTADEAVQFLKEW NC_007732_PHEV_VW572_M_28141..28 ----------------------------------MSSPT-TPVPVISWTADEAIKFLKEW EF424621_AntelopeCoV_US/OH1/2003 ----------------------------------MSSVT-TPAPVYTWTADEAIKFLKEW EF424622_GiCoV_US/OH3-TC/2006_M_ ----------------------------------MSSVT-TPAPVYTWTADEAIKFLKEW NC_004718_SARS-human_Tor2_M_2639 ----------------------------------MADNG-------TITVEELKQLLEQW AY304488_SARS-civet_SZ16_M_26383 ----------------------------------MADNS-------TITVEELKQLLEQW NC_009694_SARS-bat_HKU3-1_M_2633 ----------------------------------MADNG-------TITVEELKQLLEQW AY545919_SARS-badger_CFB/SZ/94/0 ----------------------------------MADNS-------TITVEELKQLLEQW NC_009019_Bat-CoV-HKU4_B04f ----------------------------------MSSNG-------SLTKDEVVNIIKDW NC_009020_Bat-CoV-HKU5_LMH3f ---------------------------------MASSNV-------TLSNDEVLRLVKDW NC_009021_Bat-CoV-HKU9_BF_005I ----------------------------------MSNNC-----TNTVPRPEVIAALKDW NC_001451_IBV_Beaudette_M_24505. --------------------------------MPNETNC-------TLDFEQSVQLFKEY AY646283_IBV-partridge_Partridge --------------------------------MSNKTNC-------TLDSEQAILLFKEY AY641576_IBV-peafowl_Peafowl/GD/ --------------------------------MSNETNC-------TLDFEQSVELFKEY NC_007447_BoTV-1_Breda ---------------------------------MFETNYWPFPDQAPNPFNAQVEQLSAT . NC_002645_HCoV-229E_inf-1_M_2499 NFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSN-WA- NC_005831_HCoV-NL63_AmsterdamI_M NFSWNLILTLFIVVLQYGHYKYSRLLYGLKMSVLWCLWPLVLALSIFDCFVNFNVD-WV- NC_002306_TGEV_PUR46-MAD_M_26116 NFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV- NC_003436_PEDV_CV777_M_25682..26 NFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLALSLFDAWASFQVN-WV- DQ811787_PRCV_ISU-1_M_25083..258 NFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV- AY994055_FIPV_79-1146_M_26213..2 NFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV- NC_009657_BtCoV-G1_BtCoV/512/200 NFSWNIILTILLVVLQYGHYKYSRVLYGLKMAILWLLWPLVLALSIFDAWASFNVN-WV- EF203064_Bat-CoV-HKU2_HKU2/GD/43 NFSWNIILTVFIAVLQYGNMKYSFFLYGVKMLIMWLLWPLVIALSIFNAYADFGVN-WW- NC_005147_HCoV-OC43_OC43_M_28402 NFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFNCV--YALN-NV- NC_006577_CoV-HKU1A_N1_M_27633.. NFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTIFNCF--YALN-NA- AY884001_CoV-HKU1B_N2_M_27522..2 NFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF--YALN-NI- DQ339101_CoV-HKU1C_N5_M_27462..2 NFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF--YALN-NV- NC_003045_BCoV_BCoV-ENT_M_28691. NFSLGIILLFITVILQFGYTSRSMFVYVIKMVILWLMWPLTIILTIFNCV--YALN-NV- NC_001846_MHV_MHV-A59_M_28968..2 NFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFNCV--YALN-NV- NC_007732_PHEV_VW572_M_28141..28 NFSLGIIVLFITIILQFGYTSRSMFVYVIKMVILWLMWPLTIILTIFNCV--YALN-NV- EF424621_AntelopeCoV_US/OH1/2003 NFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFNCV--YALN-NV- EF424622_GiCoV_US/OH3-TC/2006_M_ NFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFNCV--YALN-NV- NC_004718_SARS-human_Tor2_M_2639 NLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV- AY304488_SARS-civet_SZ16_M_26383 NLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV- NC_009694_SARS-bat_HKU3-1_M_2633 NLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV- AY545919_SARS-badger_CFB/SZ/94/0 NLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV- NC_009019_Bat-CoV-HKU4_B04f NFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPASMALSIFSAI--YPIS-LS- NC_009020_Bat-CoV-HKU5_LMH3f NFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASMALSIFCAV--YPID-LA- NC_009021_Bat-CoV-HKU9_BF_005I NFAVSVILLFITVLLQWGYPSRCKPIWVIKMFILWLLWPLSIAAAVFAAI--HPIN-SV- NC_001451_IBV_Beaudette_M_24505. NLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAVGVISCT--YPPN-TG- AY646283_IBV-partridge_Partridge NLFITAFLLFITILLQYGYATRSRFIYILKMIVLWCFWPLNIAVGIISCI--YPPN-TG- AY641576_IBV-peafowl_Peafowl/GD/ NLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAVGVISCI--YPPN-TG- NC_007447_BoTV-1_Breda E-NVYIFLTTLFGILQLVYVIFKLLCTMFPALHWSPIWRGLENFWLFLSLASLAIAYWWL : .. :** . :* :: NC_002645_HCoV-229E_inf-1_M_2499 -------FVAFSFFMAVSTLVMWVMYFANSF---RLFRRARTFWAWNPEVNAITVTTVLG NC_005831_HCoV-NL63_AmsterdamI_M -------FFGFSILMSIITLCLWVMYFVNSF---RLWRRVKTFWAFNPETNAIISLQVYG NC_002306_TGEV_PUR46-MAD_M_26116 -------MFGFSIAGAIVTFVLWIMYFVRSI---QLYRRTKSWWSFNPETKAILCVSALG NC_003436_PEDV_CV777_M_25682..26 -------FFAFSILMACITLMLWIMYFVNSI---RLWRRTHSWWSFNPETDALLTTSVMG DQ811787_PRCV_ISU-1_M_25083..258 -------MFSFSIAGAIVTFVLWIMYFVRSI---QLYRRTKSWWSFNPETNAILCVSALG AY994055_FIPV_79-1146_M_26213..2 -------MFGFSVAGAVVTFALWMMYFVRSV---QLYRRTKSWWSFNPETNAILCVNALG NC_009657_BtCoV-G1_BtCoV/512/200 -------FFAFSILMACVTAVLWIMYFVNSI---RLWRRTHSWWSYNPETDSILSVSVLG EF203064_Bat-CoV-HKU2_HKU2/GD/43 -------FFSFSILMLVITLVLWLMYIINSF---KLYRRTRTFWAFNPETDAIAVISVFG NC_005147_HCoV-OC43_OC43_M_28402 -------YLGLSIVFTIVAIIMWIVYFVNSI---RLFIRTGSFWSFNPETNNLMCIDMKG NC_006577_CoV-HKU1A_N1_M_27633.. -------FLAFSIVFTIISIVIWILYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG AY884001_CoV-HKU1B_N2_M_27522..2 -------FLGLSILFTIISIVIWILYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG DQ339101_CoV-HKU1C_N5_M_27462..2 -------FLGLSILFTIISIVIWILYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG NC_003045_BCoV_BCoV-ENT_M_28691. -------YLGFSIVFTIVAIIMWIVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG NC_001846_MHV_MHV-A59_M_28968..2 -------YLGFSIVFTIVSIVIWIMYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG NC_007732_PHEV_VW572_M_28141..28 -------YLGFSIVFTIVAIIMWVVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG EF424621_AntelopeCoV_US/OH1/2003 -------YLGFSIVFTIVAIIMWIVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG EF424622_GiCoV_US/OH3-TC/2006_M_ -------YLGFSIVFTIVAIIMWIVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG NC_004718_SARS-human_Tor2_M_2639 -------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG AY304488_SARS-civet_SZ16_M_26383 -------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG NC_009694_SARS-bat_HKU3-1_M_2633 -------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG AY545919_SARS-badger_CFB/SZ/94/0 -------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG NC_009019_Bat-CoV-HKU4_B04f -------SQIISGILAAICAVMWLAYFVQSI---RLFMRTGSWWSFNPESNCLLNVPIGG NC_009020_Bat-CoV-HKU5_LMH3f -------SQIISGILAATSCAMWISYFVQSI---RLFMRTGSWWSFNPESNCLLNVPIGG NC_009021_Bat-CoV-HKU9_BF_005I -------AFGFAIAFACISGIMWLSYFISSF---RLLCRTGSAWSFMPETDMLINIPLLG NC_001451_IBV_Beaudette_M_24505. -------GLVAAIILTVFACLSFVGYWIQSI---RLFKRCRSWWSFNPESNAVGSILLTN AY646283_IBV-partridge_Partridge -------GLVAAIILTVFACLSFVGYWIQSI---RLFKRCRSWWSFNPESNAVGSILLTN AY641576_IBV-peafowl_Peafowl/GD/ -------GLVAAIILTVFACLSFVGYWIQSI---RLFKRCRSWWSFNPESNAVGSILLTN NC_007447_BoTV-1_Breda PSMTFTGYWALTIIATILVLIMLIMMFVKFVSFVRLFYRTGSFAIAIRGPIVLVALDVTI : : . .* * : : NC_002645_HCoV-229E_inf-1_M_2499 QTYYQPIQQAPTGITVTLLS-GVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSR--- NC_005831_HCoV-NL63_AmsterdamI_M HNYYLPVMAAPTGVTLTLLS-GVLLVDGHKIATRVQVGQLPKYVIVATPSTTIVCDR--- NC_002306_TGEV_PUR46-MAD_M_26116 RSYVLPLEGVPTGVTLTLLS-GNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTL--- NC_003436_PEDV_CV777_M_25682..26 RQVCIPVLGAPTGVTLTLLS-GTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYGR--- DQ811787_PRCV_ISU-1_M_25083..258 RSYVLPLEGVPTGVTLTLLS-GNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTL--- AY994055_FIPV_79-1146_M_26213..2 RSYVLPLDGTPTGVTLTLLS-GNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTL--- NC_009657_BtCoV-G1_BtCoV/512/200 RHVCLPILGAPTGVTLTLLN-GTLLVEGYQVATGVQVNNLPGYVTVAKASTTIVYQR--- EF203064_Bat-CoV-HKU2_HKU2/GD/43 RSYSIPMPVAPTGITLTILS-GTLFFDGIRIATGVQPAHLPQFVTVAKPGTTIIYTR--- NC_005147_HCoV-OC43_OC43_M_28402 TMYVRPIIEDYHTLTVTIIR-GHLYIQGIKLGTGYSLADLPAYMTVAKVTHLCTYKR--- NC_006577_CoV-HKU1A_N1_M_27633.. KMFVRPVIEDYHTLTATVIR-GHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKR--- AY884001_CoV-HKU1B_N2_M_27522..2 KMYVRPVIEDYHTLTATVIR-GHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKR--- DQ339101_CoV-HKU1C_N5_M_27462..2 KMYVRPVIEDYHTLTATVIR-GHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKR--- NC_003045_BCoV_BCoV-ENT_M_28691. RMYVRPIIEDYHTLTVTIIR-GHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKR--- NC_001846_MHV_MHV-A59_M_28968..2 TVYVRPIIEDYHTLTATIIR-GHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKR--- NC_007732_PHEV_VW572_M_28141..28 RMYVRPIIEDYHTLTATIIR-GHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKR--- EF424621_AntelopeCoV_US/OH1/2003 RMYVRPIIEDYHTLTVTIIR-GHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKR--- EF424622_GiCoV_US/OH3-TC/2006_M_ RMYVRPIIEDYHTLTVTIIR-GHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKR--- NC_004718_SARS-human_Tor2_M_2639 TIVTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL--- AY304488_SARS-civet_SZ16_M_26383 TIVTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL--- NC_009694_SARS-bat_HKU3-1_M_2633 TILTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL--- AY545919_SARS-badger_CFB/SZ/94/0 TIVTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL--- NC_009019_Bat-CoV-HKU4_B04f TTVVRPLVEDSTSVTAVVND-GHLKMAGMHFGR-CDYDRLPMEITVAKPSVLIALKM--- NC_009020_Bat-CoV-HKU5_LMH3f TTVVRPLVEDSTSVTAVVTD-GYLKMAGMHFGA-CDFQRLPSEVTVAKPNVLIALKM--- NC_009021_Bat-CoV-HKU9_BF_005I RTVTRPIISDSPAVQFLIIR-GELRFDGFTLGR-CDPGDMPDIVTIARPNALHWYKR--- NC_001451_IBV_Beaudette_M_24505. GQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAK-CEPDHLPKDIFVCTPDRRNIYRM--- AY646283_IBV-partridge_Partridge GQQCNFAIESVPMVLSPIIKNGGLYCEGQWLAK-CEPDHLPKDIFVCTPDRRNIYRM--- AY641576_IBV-peafowl_Peafowl/GD/ GQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAK-CEPDHLPKDIFVCTPDRRNIYRM--- NC_007447_BoTV-1_Breda KLHCTPFAILVKEV-------GNIFYLSEYCNKPLTAAQVAA-LRICVGGQWFAYTRSTT : * : . :. : :. NC_002645_HCoV-229E_inf-1_M_2499 --VGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF-- NC_005831_HCoV-NL63_AmsterdamI_M --VGRSVNETSQTGWAFYVRAKHGDFSGVASQEGVLSEREKLLHLI-- NC_002306_TGEV_PUR46-MAD_M_26116 --VGKKLKASSATGWAYYVKSKAGDYSTEAR-TDNLSEQEKLLHMV-- NC_003436_PEDV_CV777_M_25682..26 --VGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVLHLV-- DQ811787_PRCV_ISU-1_M_25083..258 --VGKKLKASSATGWAYYVKSKAGDYSTEAR-TDNLSEQEKLLHMV-- AY994055_FIPV_79-1146_M_26213..2 --VGKQLKATTATGWAYYVKSKAGDYSTEAR-TDNLSEHEKLLHMV-- NC_009657_BtCoV-G1_BtCoV/512/200 --VGRSMNANSSTGWAFFVKSKHGDYYAAANPTEVVTDSEKILHLV-- EF203064_Bat-CoV-HKU2_HKU2/GD/43 --AGRSLNASTNTGWAFYVRSKHGDYSALSNSSDNLTENDRLLHLV-- NC_005147_HCoV-OC43_OC43_M_28402 ---GFLDRISDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALLRNNI-- NC_006577_CoV-HKU1A_N1_M_27633.. ---AFLDKLDVNSGFAVFVKSKVGNYRLPSS-KPSGMDTALLRA---- AY884001_CoV-HKU1B_N2_M_27522..2 ---AFLDKLDVNSGFAVFVKSKVGNYRLPSS-KSSGMDTALLRA---- DQ339101_CoV-HKU1C_N5_M_27462..2 ---AFLDKLDVNSGFAVFVKSKVGNYRLPSS-KSSGMDTALLRA---- NC_003045_BCoV_BCoV-ENT_M_28691. ---GFLDKIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALLRNNI-- NC_001846_MHV_MHV-A59_M_28968..2 ---AFLDKVDGVSGFAVYVKSKVGNYRLPSN-KPSGADTALLRI---- NC_007732_PHEV_VW572_M_28141..28 ---GFLDRIGDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALLRNNI-- EF424621_AntelopeCoV_US/OH1/2003 ---GFLDKIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALLRNNI-- EF424622_GiCoV_US/OH3-TC/2006_M_ ---GFLDKIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALLRNNI-- NC_004718_SARS-human_Tor2_M_2639 ---GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ---- AY304488_SARS-civet_SZ16_M_26383 ---GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ---- NC_009694_SARS-bat_HKU3-1_M_2633 ---GASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ---- AY545919_SARS-badger_CFB/SZ/94/0 ---GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ---- NC_009019_Bat-CoV-HKU4_B04f ---VKRQSYGTNSGVAIFHRYKAGNYRRPTIIQDE--ELALLRA---- NC_009020_Bat-CoV-HKU5_LMH3f ---IKRQAYGTNSGVAIYHRYKAGNYRRPPIIQDQ--ELALLRA---- NC_009021_Bat-CoV-HKU9_BF_005I ---ALTRNMYTRSAILVYIKYKVGNHRVQNT-TEDGDRLAMFVA---- NC_001451_IBV_Beaudette_M_24505. VQKYTGDQSGNKKRFATFV------YAKQSVDTGELESVATGGSSLYT AY646283_IBV-partridge_Partridge VQKYTGDQSGNKKRFATFV------YAKQSVDSGELESVSTSVGSLYT AY641576_IBV-peafowl_Peafowl/GD/ VQKYTGDQSGNKKRFATFV------YSKQSVDTGELESVATGGSSLYT NC_007447_BoTV-1_Breda TSAAKVAAANSTAKYHLFVLQGVADYTQLSSVKFE------------- : .