>NC_002645_HCoV-229E_inf-1_M_24995..25672_678bp_225aa
---------------------------------MSNDNC----------TGDIVTHLKNW
NFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLALSIFDTWANWDSN-WA-
-------FVAFSFFMAVSTLVMWVMYFANSF---RLFRRARTFWAWNPEVNAITVTTVLG
QTYYQPIQQAPTGITVTLLS-GVLYVDGHRLASGVQVHNLPEYMTVAVPSTTIIYSR---
--VGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLLHFF--
>NC_005831_HCoV-NL63_AmsterdamI_M_25442..26122_681bp_226aa
-----------------------------------MSNS-------SVPLLEVYVHLRNW
NFSWNLILTLFIVVLQYGHYKYSRLLYGLKMSVLWCLWPLVLALSIFDCFVNFNVD-WV-
-------FFGFSILMSIITLCLWVMYFVNSF---RLWRRVKTFWAFNPETNAIISLQVYG
HNYYLPVMAAPTGVTLTLLS-GVLLVDGHKIATRVQVGQLPKYVIVATPSTTIVCDR---
--VGRSVNETSQTGWAFYVRAKHGDFSGVASQEGVLSEREKLLHLI--
>NC_002306_TGEV_PUR46-MAD_M_26116..26904_789bp_262aa
MK-ILLILACVIACACGERYCAMKSDTDLSCRNSTASDC-----ESCFNGGDLIWHLANW
NFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVSRYV-
-------MFGFSIAGAIVTFVLWIMYFVRSI---QLYRRTKSWWSFNPETKAILCVSALG
RSYVLPLEGVPTGVTLTLLS-GNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTL---
--VGKKLKASSATGWAYYVKSKAGDYSTEAR-TDNLSEQEKLLHMV--
>NC_003436_PEDV_CV777_M_25682..26362_681bp_226aa
-----------------------------------MSNG-------SIPVDEVIEHLRNW
NFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLALSLFDAWASFQVN-WV-
-------FFAFSILMACITLMLWIMYFVNSI---RLWRRTHSWWSFNPETDALLTTSVMG
RQVCIPVLGAPTGVTLTLLS-GTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYGR---
--VGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVLHLV--
>DQ811787_PRCV_ISU-1_M_25083..25868_786bp_261aa
MK-ILLILACAIACACGERYCAMQ-ETGLSCRNSTVSDC-----ESCFNGGDLIWHLANW
NFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV-
-------MFSFSIAGAIVTFVLWIMYFVRSI---QLYRRTKSWWSFNPETNAILCVSALG
RSYVLPLEGVPTGVTLTLLS-GNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTL---
--VGKKLKASSATGWAYYVKSKAGDYSTEAR-TDNLSEQEKLLHMV--
>AY994055_FIPV_79-1146_M_26213..27001_789bp_262aa
MKYILLILACIIACVYGERYCAMQ-DSGLQCINGTNSRC-----QTCFERGDLIWHLANW
NFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVSRYV-
-------MFGFSVAGAVVTFALWMMYFVRSV---QLYRRTKSWWSFNPETNAILCVNALG
RSYVLPLDGTPTGVTLTLLS-GNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTL---
--VGKQLKATTATGWAYYVKSKAGDYSTEAR-TDNLSEHEKLLHMV--
>NC_009657_BtCoV-G1_BtCoV/512/2005_M_25678..26361_684bp_227aa
----------------------------------MSSNQ-------SVPVEEVIKHLRNW
NFSWNIILTILLVVLQYGHYKYSRVLYGLKMAILWLLWPLVLALSIFDAWASFNVN-WV-
-------FFAFSILMACVTAVLWIMYFVNSI---RLWRRTHSWWSYNPETDSILSVSVLG
RHVCLPILGAPTGVTLTLLN-GTLLVEGYQVATGVQVNNLPGYVTVAKASTTIVYQR---
--VGRSMNANSSTGWAFFVKSKHGDYYAAANPTEVVTDSEKILHLV--
>EF203064_Bat-CoV-HKU2_HKU2/GD/430/2006_M_24768..25457_690bp_229aa
----------------------------------MSSNS-----TESVPVTEVLEHLRNW
NFSWNIILTVFIAVLQYGNMKYSFFLYGVKMLIMWLLWPLVIALSIFNAYADFGVN-WW-
-------FFSFSILMLVITLVLWLMYIINSF---KLYRRTRTFWAFNPETDAIAVISVFG
RSYSIPMPVAPTGITLTILS-GTLFFDGIRIATGVQPAHLPQFVTVAKPGTTIIYTR---
--AGRSLNASTNTGWAFYVRSKHGDYSALSNSSDNLTENDRLLHLV--
>NC_005147_HCoV-OC43_OC43_M_28402..29094_693bp_230aa
----------------------------------MSSKT-TPAPVYIWTADEAIKFLKEW
NFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFNCV--YALN-NV-
-------YLGLSIVFTIVAIIMWIVYFVNSI---RLFIRTGSFWSFNPETNNLMCIDMKG
TMYVRPIIEDYHTLTVTIIR-GHLYIQGIKLGTGYSLADLPAYMTVAKVTHLCTYKR---
---GFLDRISDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALLRNNI--
>NC_006577_CoV-HKU1A_N1_M_27633..28304_672bp_223aa
----------------------------------MNKSF-----LPQFTSDQAVTFLKEW
NFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTIFNCF--YALN-NA-
-------FLAFSIVFTIISIVIWILYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
KMFVRPVIEDYHTLTATVIR-GHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKR---
---AFLDKLDVNSGFAVFVKSKVGNYRLPSS-KPSGMDTALLRA----
>AY884001_CoV-HKU1B_N2_M_27522..28193_672bp_223aa
---------------------------------MNESIF------PHWNSDQAITFLKEW
NFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF--YALN-NI-
-------FLGLSILFTIISIVIWILYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
KMYVRPVIEDYHTLTATVIR-GHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKR---
---AFLDKLDVNSGFAVFVKSKVGNYRLPSS-KSSGMDTALLRA----
>DQ339101_CoV-HKU1C_N5_M_27462..28133_672bp_223aa
---------------------------------MNESIF------PHWNSDQAITFLKEW
NFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF--YALN-NV-
-------FLGLSILFTIISIVIWILYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
KMYVRPVIEDYHTLTATVIR-GHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKR---
---AFLDKLDVNSGFAVFVKSKVGNYRLPSS-KSSGMDTALLRA----
>NC_003045_BCoV_BCoV-ENT_M_28691..29383_693bp_230aa
----------------------------------MSSVT-TPAPVYTWTADEAIKFLKEW
NFSLGIILLFITVILQFGYTSRSMFVYVIKMVILWLMWPLTIILTIFNCV--YALN-NV-
-------YLGFSIVFTIVAIIMWIVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
RMYVRPIIEDYHTLTVTIIR-GHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKR---
---GFLDKIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALLRNNI--
>NC_001846_MHV_MHV-A59_M_28968..29654_687bp_228aa
----------------------------------MSSTTQAPEPVYQWTADEAVQFLKEW
NFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFNCV--YALN-NV-
-------YLGFSIVFTIVSIVIWIMYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
TVYVRPIIEDYHTLTATIIR-GHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKR---
---AFLDKVDGVSGFAVYVKSKVGNYRLPSN-KPSGADTALLRI----
>NC_007732_PHEV_VW572_M_28141..28833_693bp_230aa
----------------------------------MSSPT-TPVPVISWTADEAIKFLKEW
NFSLGIIVLFITIILQFGYTSRSMFVYVIKMVILWLMWPLTIILTIFNCV--YALN-NV-
-------YLGFSIVFTIVAIIMWVVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
RMYVRPIIEDYHTLTATIIR-GHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKR---
---GFLDRIGDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALLRNNI--
>EF424621_AntelopeCoV_US/OH1/2003WD1418_M_28675..29367_693bp_230aa
----------------------------------MSSVT-TPAPVYTWTADEAIKFLKEW
NFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFNCV--YALN-NV-
-------YLGFSIVFTIVAIIMWIVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
RMYVRPIIEDYHTLTVTIIR-GHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKR---
---GFLDKIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALLRNNI--
>EF424622_GiCoV_US/OH3-TC/2006_M_28659..29351_693bp_230aa
----------------------------------MSSVT-TPAPVYTWTADEAIKFLKEW
NFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFNCV--YALN-NV-
-------YLGFSIVFTIVAIIMWIVYFVNSI---RLFIRTGSWWSFNPETNNLMCIDMKG
RMYVRPIIEDYHTLTVTIIR-GHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKR---
---GFLDKIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALLRNNI--
>NC_004718_SARS-human_Tor2_M_26398..27063_666bp_221aa
----------------------------------MADNG-------TITVEELKQLLEQW
NLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV-
-------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG
TIVTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL---
---GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ----
>AY304488_SARS-civet_SZ16_M_26383..27048_666bp_221aa
----------------------------------MADNS-------TITVEELKQLLEQW
NLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV-
-------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG
TIVTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL---
---GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ----
>NC_009694_SARS-bat_HKU3-1_M_26339..27004_666bp_221aa
----------------------------------MADNG-------TITVEELKQLLEQW
NLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV-
-------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG
TILTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL---
---GASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ----
>AY545919_SARS-badger_CFB/SZ/94/03_M_26377..27042_666bp_221aa
----------------------------------MADNS-------TITVEELKQLLEQW
NLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAV--YRIN-WV-
-------TGGIAIAMACIVGLMWLSYFVASF---RLFARTRSMWSFNPETNILLNVPLRG
TIVTRPLMESELVIGAVIIR-GHLRMAGHSLGR-CDIKDLPKEITVATSRTLSYYKL---
---GASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ----
>NC_009019_Bat-CoV-HKU4_B04f HKU41_M_28000..28659_660bp_219aa
----------------------------------MSSNG-------SLTKDEVVNIIKDW
NFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPASMALSIFSAI--YPIS-LS-
-------SQIISGILAAICAVMWLAYFVQSI---RLFMRTGSWWSFNPESNCLLNVPIGG
TTVVRPLVEDSTSVTAVVND-GHLKMAGMHFGR-CDYDRLPMEITVAKPSVLIALKM---
---VKRQSYGTNSGVAIFHRYKAGNYRRPTIIQDE--ELALLRA----
>NC_009020_Bat-CoV-HKU5_LMH3f HKU51_M_28166..28828_663bp_220aa
---------------------------------MASSNV-------TLSNDEVLRLVKDW
NFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASMALSIFCAV--YPID-LA-
-------SQIISGILAATSCAMWISYFVQSI---RLFMRTGSWWSFNPESNCLLNVPIGG
TTVVRPLVEDSTSVTAVVTD-GYLKMAGMHFGA-CDFQRLPSEVTVAKPNVLIALKM---
---IKRQAYGTNSGVAIYHRYKAGNYRRPPIIQDQ--ELALLRA----
>NC_009021_Bat-CoV-HKU9_BF_005I HKU91_M_25689..26357_669bp_222aa
----------------------------------MSNNC-----TNTVPRPEVIAALKDW
NFAVSVILLFITVLLQWGYPSRCKPIWVIKMFILWLLWPLSIAAAVFAAI--HPIN-SV-
-------AFGFAIAFACISGIMWLSYFISSF---RLLCRTGSAWSFMPETDMLINIPLLG
RTVTRPIISDSPAVQFLIIR-GELRFDGFTLGR-CDPGDMPDIVTIARPNALHWYKR---
---ALTRNMYTRSAILVYIKYKVGNHRVQNT-TEDGDRLAMFVA----
>NC_001451_IBV_Beaudette_M_24505..25182_678bp_225aa
--------------------------------MPNETNC-------TLDFEQSVQLFKEY
NLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAVGVISCT--YPPN-TG-
-------GLVAAIILTVFACLSFVGYWIQSI---RLFKRCRSWWSFNPESNAVGSILLTN
GQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAK-CEPDHLPKDIFVCTPDRRNIYRM---
VQKYTGDQSGNKKRFATFV------YAKQSVDTGELESVATGGSSLYT
>AY646283_IBV-partridge_Partridge/GD/S14/2003_M_24340..25017_678bp_225aa
--------------------------------MSNKTNC-------TLDSEQAILLFKEY
NLFITAFLLFITILLQYGYATRSRFIYILKMIVLWCFWPLNIAVGIISCI--YPPN-TG-
-------GLVAAIILTVFACLSFVGYWIQSI---RLFKRCRSWWSFNPESNAVGSILLTN
GQQCNFAIESVPMVLSPIIKNGGLYCEGQWLAK-CEPDHLPKDIFVCTPDRRNIYRM---
VQKYTGDQSGNKKRFATFV------YAKQSVDSGELESVSTSVGSLYT
>AY641576_IBV-peafowl_Peafowl/GD/KQ6/2003_M_24448..25125_678bp_225aa
--------------------------------MSNETNC-------TLDFEQSVELFKEY
NLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNIAVGVISCI--YPPN-TG-
-------GLVAAIILTVFACLSFVGYWIQSI---RLFKRCRSWWSFNPESNAVGSILLTN
GQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAK-CEPDHLPKDIFVCTPDRRNIYRM---
VQKYTGDQSGNKKRFATFV------YSKQSVDTGELESVATGGSSLYT
>NC_007447_BoTV-1_Breda 1_M_25758..26459_702bp_233aa
---------------------------------MFETNYWPFPDQAPNPFNAQVEQLSAT
E-NVYIFLTTLFGILQLVYVIFKLLCTMFPALHWSPIWRGLENFWLFLSLASLAIAYWWL
PSMTFTGYWALTIIATILVLIMLIMMFVKFVSFVRLFYRTGSFAIAIRGPIVLVALDVTI
KLHCTPFAILVKEV-------GNIFYLSEYCNKPLTAAQVAA-LRICVGGQWFAYTRSTT
TSAAKVAAANSTAKYHLFVLQGVADYTQLSSVKFE-------------