NC_002645_HCoV-229E_inf-1_nsp3_2 --G-KVSFSDDVEVKDIEP--VYR-VKLCFEFEDEKLVDVCEKAI-GKKIKHEGD-WDSF NC_005831_HCoV-NL63_AmsterdamI_n --G-KISFSDDVIVHDVEP--THK-VKLIFEFEDDVVTSLCKKSF-GKSIIYTGD-WEGL NC_002306_TGEV_PUR46-MAD_nsp3_29 -GDKTVSFSEEVDVQEIAP--VTR-VKLEFEFDNEIVTGVLERAI-GTRYKFTGTTWEEF NC_003436_PEDV_CV777_nsp3_2982.. --G-DVKFSDEVSVKTIDP--VYK-VSLEFEFESETIMAVLNKAV-GNRIKVTGG-WDDV DQ811787_PRCV_ISU-1_nsp3_2941..7 -GDKVVSFSDEVDVQEIAP--VTR-VKLEFEFDNEIVTGVLERAI-GTRYTFTGTTWEEF AY994055_FIPV_79-1146_nsp3_2948. -GDKSVSFSDNVNVREIEP--VTR-VRLEFEFDNEVVTQVLEKVI-GTKYKFIGTTWEEF NC_009657_BtCoV-G1_BtCoV/512/200 --G-VVTISDEVQVRTIDP--VYK-VRLEYEFEDETLVKVCEKAI-GTKLKVTGD-WSNL EF203064_Bat-CoV-HKU2_HKU2/GD/43 --GKNVAFDDNVTVTEIDP--IFK-VKLSFEFEDEKLIELCKKVI-GSKVKCSS--WSQL NC_005147_HCoV-OC43_OC43_nsp3_27 --GRRVTFKEQPTVKEIIS--MPKIIKVFYELDNDFNTIL-NTAC-GVFEVDDTVDMEEF NC_006577_CoV-HKU1A_N1_nsp3_2633 --GRKVNFNEKPVVMEIPS--LMT-VKVMFDLDSTFDDIL-GKVC-SEFEVEKGVTVDDF AY884001_CoV-HKU1B_N2_nsp3_2627. --GRKVNFNEKPVVMEIPS--LMT-VKVMFDLDSTFDDIL-GKVC-SEFEVEKGVTVDDF DQ339101_CoV-HKU1C_N5_nsp3_2627. --GRKVNFNEKPVVMEIPS--LMT-VKVMFDLDSTFDDIL-GKVC-SEFEVEKGVTVDDF NC_003045_BCoV_BCoV-ENT_nsp3_276 --GRRVTFKEQPTVNEIAS--TPKTIKVFYELDKDFNTIL-NTAC-GVFEVDDTVDMEEF NC_001846_MHV_MHV-A59_nsp3_2706. --GKKVEFNDKPKVRKIPS--TRK-IKITFALDATFDSVL-SKAC-SEFEVDKDVTLDEL NC_007732_PHEV_VW572_nsp3_2764.. --GKRVTFKEQPTVNEIVS--MPKTIKVFYELDKDFNTIL-NTAC-GVFEVDDTVDMEEF EF424621_AntelopeCoV_US/OH1/2003 --GRRVTFKEQPTVNEIAS--TPKTIKVFYELDKDFNTIL-NTAC-GVFEVDDTVDMEEF EF424622_GiCoV_US/OH3-TC/2006_ns --GRRVTFKEQPTVNEIAS--TPKTIKVFYELDKDFNTIL-NTAC-GVFEVDDTVDMEEF NC_004718_SARS-human_Tor2_nsp3_2 APIKGVTFGED-TVWEVQG--YKN-VRITFELDERVDKVL-NEKC-SVYTVESGTEVTEF AY304488_SARS-civet_SZ16_nsp3_27 APIKGVTFGED-TVWEVQG--YKN-VRITFELDERVDRVL-NEKC-SVYTVESGTEVTEF NC_009694_SARS-bat_HKU3-1_nsp3_2 APVKGVTFGED-TVLEVQG--YKN-VKITFELDVRVDKVL-NEKC-SVYTVESGTEVTEF AY545919_SARS-badger_CFB/SZ/94/0 APIKGVTFGED-TVFEVQG--YKN-VRITFELDERVDKVL-NEKC-SVYTVESGTEVTEF NC_009019_Bat-CoV-HKU4_B04f MPSKKVTFGDV-NTVEVTA--YRS-VSITYDIHPVLDALLSSSKL-ATFTVEKDLLVEDF NC_009020_Bat-CoV-HKU5_LMH3f APPKGVKFGGE-QTKEITA--VRS-VSVDYDVHPVLDALLAGSEL-ATFTVEKDLPVKDF NC_009021_Bat-CoV-HKU9_BF_005I -GVSKVTFGDE-EVHTIPN--TVT-VNFSYDVCEGLDAIL-DKVM-APFQVEEGTKLEDL NC_001451_IBV_Beaudette_nsp3_254 --GKTVTFGET-TVQEIPPPDVVP-IKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQL AY646283_IBV-partridge_Partridge --GKTVTFGET-TVKEIPPPDVVP-IKVSIECCGEPWNTIFKKAYKEPIEVETDLTVEQL AY641576_IBV-peafowl_Peafowl/GD/ --GKTVTFGET-TVQEIPPPDVVF-IKVSIECCGEPWNTIFKKAYKEPIEVEKDLTVEQL : : . : : . : . NC_002645_HCoV-229E_inf-1_nsp3_2 CKTIQSALSVV---------SCYVNLPTY----------YIYDEEGGNDLSLP--VMISE NC_005831_HCoV-NL63_AmsterdamI_n HEVLTSAMNVI---------GQHIKLPQF----------YIYDEEGGYDVSKP--VMISQ NC_002306_TGEV_PUR46-MAD_nsp3_29 EESISEELDAIFDTL----ANQGVELEGY----------FIYDTCGGFDIKNPDGIMISQ NC_003436_PEDV_CV777_nsp3_2982.. VEYINVAIEVL---------KDHVEVPKY----------YIYDEEGGTDPNLP--VMVSQ DQ811787_PRCV_ISU-1_nsp3_2941..7 EESISEELDAIFDTL----ANQGVELEGY----------FIYDTCGGFDIKNPDGIMISQ AY994055_FIPV_79-1146_nsp3_2948. EDSISEKLDKIFDTL----AEQGVELEGY----------FIYDTCGGFDINNPDGVMISQ NC_009657_BtCoV-G1_BtCoV/512/200 LETLEKAMDVV---------RQHLDVPDY----------FVYDEEGGTDLNLT--IMVSQ EF203064_Bat-CoV-HKU2_HKU2/GD/43 VEIIDTALTAT---------KSYYNVPEY----------FIYDEEGGNDLNLD--VMISE NC_005147_HCoV-OC43_OC43_nsp3_27 YAVVIDAIEEKLSPC-KELEGVGAKVSAF-LQKLEDNPLFLFDEAGEEVLAPK--LYCAF NC_006577_CoV-HKU1A_N1_nsp3_2633 VAVVCDAIENALNSC-KEHPVVGYQVRAF-LNKLNENVVYLFDEAGDEAMASR--MYCTF AY884001_CoV-HKU1B_N2_nsp3_2627. VAVVCDAIENALNSC-KDHPVVGYQVRAF-LNKLNENVVYLFDEAGDEAMASR--MYCTF DQ339101_CoV-HKU1C_N5_nsp3_2627. VAVVCDAIENALNSC-KEHPVVGYQVRAF-LNKLNENVVYLFDEAGDEAMASR--MYCTF NC_003045_BCoV_BCoV-ENT_nsp3_276 YAVVIDAIEEKLSPC-KELEGVGAKVSAF-LQKLEDNSLFLFDEAGEEVLASK--LYCAF NC_001846_MHV_MHV-A59_nsp3_2706. LDVVLDAVESTLSPC-KEHDVIGTKVCAL-LDRLAGDYVYLFDEGGDEVIAPR--MYCSF NC_007732_PHEV_VW572_nsp3_2764.. YAVVIDAIEEKLSPC-KELEGVGAKVSAF-LQKLDDNSLFLFDEAGEEVFAPK--LYCAF EF424621_AntelopeCoV_US/OH1/2003 YAVVVDAIEEKLSPC-KELEGVGAKVSAF-LQKLEDNSLFLFDEAGEEVLASK--LYCAF EF424622_GiCoV_US/OH3-TC/2006_ns YAVVVDAIEEKLSPC-KELEGVGAKVSAF-LQKLEDNSLFLFDEAGEEVLASK--LYCAF NC_004718_SARS-human_Tor2_nsp3_2 ACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATF-----YLFDDAGEENFSSR--MYCSF AY304488_SARS-civet_SZ16_nsp3_27 ACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATF-----YLFDDAGEENFSSR--MYCSF NC_009694_SARS-bat_HKU3-1_nsp3_2 ACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATF-----YLFDDAGEEKLSSR--MYCSF AY545919_SARS-badger_CFB/SZ/94/0 ACVVAEAVVKTLQPVSDLLTNMGIDLDEWSVATF-----YLFDDAGEENFSSR--MYCSF NC_009019_Bat-CoV-HKU4_B04f VDVIKDEVLTLLTPL-----LRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSN--MTFSI NC_009020_Bat-CoV-HKU5_LMH3f VDVVKDEVIELLSKL-----LRGYNVDGFDLEDFADTPCYVYNAEGDLAWSST--MTFSV NC_009021_Bat-CoV-HKU9_BF_005I ACVVQKAVYERLSDL---FSDCPAELRPINLEDFLTSECFVYSKDYEKILMPE--MYFSL NC_001451_IBV_Beaudette_nsp3_254 LSVIYEKMCDDLKLF-----PEAPEPPPF--------ENVALVDKNGKDLDCIKSCHLIY AY646283_IBV-partridge_Partridge LSVIYEKMCDDLKLF-----PEAPEPPPF--------ENVALVDKNGKDLDCIKSCHLVY AY641576_IBV-peafowl_Peafowl/GD/ LSVVYEKMCDDLKSF-----PEAPEPPPF--------ENVALVDKNGKDLDCIKSCHLIY : : . NC_002645_HCoV-229E_inf-1_nsp3_2 WPLSVQQAQ--------------------------------QEATLPDIAE--------- NC_005831_HCoV-NL63_AmsterdamI_n WPISNDSN---------------------------------GCVVEASTDFHQL------ NC_002306_TGEV_PUR46-MAD_nsp3_29 YDINITADEKSEVSAS-------SEEEEVESVE--------EDPENEIVEASEGAEGTSS NC_003436_PEDV_CV777_nsp3_2982.. WP--LNDDTISQDLLDVEVVTDAPIDSEGDEVD--------SSAPEKVADVANSEPGDDG DQ811787_PRCV_ISU-1_nsp3_2941..7 YDITADEKSEVSASSEKEEVDSV------------------EENPGVEVEASEGAEGISS AY994055_FIPV_79-1146_nsp3_2948. YDLNTAADDKSDSDASVEDISLISDNEDVEQIEEDNTST--DDAEDVSSVEGETVSVVDV NC_009657_BtCoV-G1_BtCoV/512/200 WPLSSDSED------DFKAVDDEPNANTDETVDTFAEDVAETQNVQQDVTQDEVEAVCDL EF203064_Bat-CoV-HKU2_HKU2/GD/43 WPLQVDEVS--------------------------------ELVSTDETVEEQAVEQVE- NC_005147_HCoV-OC43_OC43_nsp3_27 TAPEDDDFLEE------------------------------SDVEEDDVEGEETDLTVTS NC_006577_CoV-HKU1A_N1_nsp3_2633 AI--EDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND AY884001_CoV-HKU1B_N2_nsp3_2627. AI--EDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND DQ339101_CoV-HKU1C_N5_nsp3_2627. AI--EDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND NC_003045_BCoV_BCoV-ENT_nsp3_276 TAPEDDDFLEE------------------------------SGVEEDDVEGEETDLTVTS NC_001846_MHV_MHV-A59_nsp3_2706. SA--PDDEDCVAADVVDA-----------------------DENQDDDAEDSAVLVADTQ NC_007732_PHEV_VW572_nsp3_2764.. TAPEEDYFLEE------------------------------SDVEEDDVEGEETDLTVTS EF424621_AntelopeCoV_US/OH1/2003 TAPEDDDFLEE------------------------------SGVEEDDVEGEETDLTVTS EF424622_GiCoV_US/OH3-TC/2006_ns TAPEDDDFLEE------------------------------SGVEEDDVEGEETDLTVTS NC_004718_SARS-human_Tor2_nsp3_2 YP--PDEEE--------------------------------EDDAECEEEEID------- AY304488_SARS-civet_SZ16_nsp3_27 YP--PDEEE--------------------------------EDDAECEEEEID------- NC_009694_SARS-bat_HKU3-1_nsp3_2 YP--PDEE---------------------------------EDCEECEDEE--------- AY545919_SARS-badger_CFB/SZ/94/0 YP--PDEEE--------------------------------EDDAECEEEEID------- NC_009019_Bat-CoV-HKU4_B04f NPVEDVEEV--------------------------------EEFIEDDYLSDELPIADDE NC_009020_Bat-CoV-HKU5_LMH3f NPVEEVEEECD------------------------------DDYVEDEYLSEEMLVEEDE NC_009021_Bat-CoV-HKU9_BF_005I EDAVPVDD---------------------------------------------------- NC_001451_IBV_Beaudette_nsp3_254 RDYESDDDIEE------------------------------EDAEECDTDSGEAEECDTN AY646283_IBV-partridge_Partridge RDYESDDDIEE------------------------------EDAEECDTASDDAEECDTG AY641576_IBV-peafowl_Peafowl/GD/ RDYESDDDIEE------------------------------EDAEECDTDL--------- NC_002645_HCoV-229E_inf-1_nsp3_2 -----------------DVVDQVEEVNSIF------------------------------ NC_005831_HCoV-NL63_AmsterdamI_n -----------------ECIVDDSVREEVD------------------------------ NC_002306_TGEV_PUR46-MAD_nsp3_29 QEEVETV----------EVADITSTEEDVD--IVEVSAK--------------------- NC_003436_PEDV_CV777_nsp3_2982.. L----------------PVAPETNVESEVE------------------------------ DQ811787_PRCV_ISU-1_nsp3_2941..7 QEEAETV----------EVADLTSTEEDVDIIEV--SAK--------------------- AY994055_FIPV_79-1146_nsp3_2948. EDFVEQVSLVEENNVLTPAVNPDEQLSSVEKKDE-VSAK--------------------- NC_009657_BtCoV-G1_BtCoV/512/200 VVKATEE----------GPIEHEELSEDQK------------------------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 -----------------PVVEDVSDIIEVN------------------------------ NC_005147_HCoV-OC43_OC43_nsp3_27 AGQ--------------PCVASEQEESSEV------------------------------ NC_006577_CoV-HKU1A_N1_nsp3_2633 DEDVVTGDNDDE-----DVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVV AY884001_CoV-HKU1B_N2_nsp3_2627. DEDVVTGDNDDE-----DVVTGDNDDEDVVTGDND--DE--------------------- DQ339101_CoV-HKU1C_N5_nsp3_2627. DE---------------DVVTGDNDDEDVV------------------------------ NC_003045_BCoV_BCoV-ENT_nsp3_276 AGE--------------PCVASEQEESSEI------------------------------ NC_001846_MHV_MHV-A59_nsp3_2706. EEDGVAKGQVEADSE--ICVAHTGSQEELA------------------------------ NC_007732_PHEV_VW572_nsp3_2764.. AGE--------------PCVASKQKESSEI------------------------------ EF424621_AntelopeCoV_US/OH1/2003 AGE--------------PCVASEQEESSEI------------------------------ EF424622_GiCoV_US/OH3-TC/2006_ns AGE--------------PCVASEQEESSEI------------------------------ NC_004718_SARS-human_Tor2_nsp3_2 -----------------ETCEHEYGTEDDY------------------------------ AY304488_SARS-civet_SZ16_nsp3_27 -----------------ETCEHEYGTEDDY------------------------------ NC_009694_SARS-bat_HKU3-1_nsp3_2 -----------------ETCEHEYGTEDDY------------------------------ AY545919_SARS-badger_CFB/SZ/94/0 -----------------ETCEHGYGTEDDY------------------------------ NC_009019_Bat-CoV-HKU4_B04f EAWA-------------RAVEEVMPLDDIL------------------------------ NC_009020_Bat-CoV-HKU5_LMH3f NSWA-------------AAVEAVIPMEDVQ------------------------------ NC_009021_Bat-CoV-HKU9_BF_005I -----------------EMVDDIEDTVEQA------------------------------ NC_001451_IBV_Beaudette_nsp3_254 S----------------ECEEEDEDTKVLA------------------------------ AY646283_IBV-partridge_Partridge S----------------ECEEEDEGTKVLA------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ -----------------ECEEEDEDTKVLA------------------------------ NC_002645_HCoV-229E_inf-1_nsp3_2 --------------DIETVDVKHDVSPFEMPFEELNGLKILKQLDNNCWVNSV------- NC_005831_HCoV-NL63_AmsterdamI_n ---------IIEQPFEEVEHVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTT------- NC_002306_TGEV_PUR46-MAD_nsp3_29 -------DDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINAC------- NC_003436_PEDV_CV777_nsp3_2982.. -------EVAATLSFIKDTPSTVTKDPFAFDFVSYGGLKVLRQSHNNCWVTST------- DQ811787_PRCV_ISU-1_nsp3_2941..7 -------DDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINAC------- AY994055_FIPV_79-1146_nsp3_2948. -------NDPWAAAVDEQEAEQPKPSLTPFKTTNLNGKIILKQQDNNCWINAC------- NC_009657_BtCoV-G1_BtCoV/512/200 -------EVQQALAFIEDKPVVVKPDVFAFSYASYGGLKVLNQSSNNCWVSSA------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------KAFAIDDSPKRAISPFGFDTNEINGRRVLYQSNNNCWVNAA------- NC_005147_HCoV-OC43_OC43_nsp3_27 ----------------------------LEDTLDDGPSVETSDSQVEEDVEMS------- NC_006577_CoV-HKU1A_N1_nsp3_2633 TGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEEIV AY884001_CoV-HKU1B_N2_nsp3_2627. -------DVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIV DQ339101_CoV-HKU1C_N5_nsp3_2627. ----------TGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEDVVTGDNNDEESV NC_003045_BCoV_BCoV-ENT_nsp3_276 ----------------------------LEDTLDDGPCVETSDSQVEEDVEMS------- NC_001846_MHV_MHV-A59_nsp3_2706. ----------EPDAVGSQTPIASAEETEVGEASDREGIAEAKATVCADAVDAC---PDQV NC_007732_PHEV_VW572_nsp3_2764.. ----------------------------LEDTLDDGPCVETSDSQVEEDVEMS------- EF424621_AntelopeCoV_US/OH1/2003 ----------------------------LENTLDDGPCVETSDSQVEEDVEMS------- EF424622_GiCoV_US/OH3-TC/2006_ns ----------------------------LENTLDDGPCVETSDSQVEEDVEMS------- NC_004718_SARS-human_Tor2_nsp3_2 -------------------------QGLPLEFGASAETVRVEEEEEEDWLDDT------- AY304488_SARS-civet_SZ16_nsp3_27 -------------------------QGLPLEFGASAETVRVEEEEEEDWLDDT------- NC_009694_SARS-bat_HKU3-1_nsp3_2 -----------------------KGLPLEFGASTETPH-VEEEEEEEDWLDDA------- AY545919_SARS-badger_CFB/SZ/94/0 -------------------------QGLPLEFGASAETVRVEEEEEEDWLDDT------- NC_009019_Bat-CoV-HKU4_B04f ----------------VAEIELEEDPPLETALESVEAEVVETAEAQEPSVESI------- NC_009020_Bat-CoV-HKU5_LMH3f ----------------LDTLVAEIDVSEPADDVAEQASTEEVEVPSACVLEAS------- NC_009021_Bat-CoV-HKU9_BF_005I ------------------------------------------SDSDDQWLGDE------- NC_001451_IBV_Beaudette_nsp3_254 --------------LIQDPASIKYPLPLDEDYSVYNGCIVHKDALDVVNLPSG------- AY646283_IBV-partridge_Partridge --------------LIQDPASQKYPLPLDDDYSVYNGCIVHKDALDVVNLPSG------- AY641576_IBV-peafowl_Peafowl/GD/ --------------LIQDPASNKYPLPLDDDYSVFNGCIVHKDALDVVNLPSG------- : NC_002645_HCoV-229E_inf-1_nsp3_2 ----MLQIQLTGILDGDYAMQFFK---MGRVAKMIERCYTAEQCIRGAMGDVGLCMYRL- NC_005831_HCoV-NL63_AmsterdamI_n ----LVQLQLTKLLDDSIEMQLFK---VGKVDSIVQKCYELSHLISGSLGDSGKLLSEL- NC_002306_TGEV_PUR46-MAD_nsp3_29 ----CYQLQAFDFFNNE-AWEKFK---KGDVMDFVNLCYAATTLARGHSGDAEYLLELM- NC_003436_PEDV_CV777_nsp3_2982.. ----LVQLQLLGIVDDP-AMELFS---AGRVGPMVRKCYESQKAILGSLGDVSACLESL- DQ811787_PRCV_ISU-1_nsp3_2941..7 ----CYQLQAFDFFNNE-AWEKFK---KGDVMDFVNLCYAATTLARGHSGDADYLLELM- AY994055_FIPV_79-1146_nsp3_2948. ----CYQLQAFDFFNHD-LWDGFK---KDDVMPFVDFCYAALTLKQGDSGDAEYLLETM- NC_009657_BtCoV-G1_BtCoV/512/200 ----LVQLQLTGLLDSD-EMQLFN---AGRVSPMVKRCYESQRAIFGSLGDVSACLESL- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ----CYQLQVLGF--DSPAMELYR---VGGTHNLVKQCYEATGAFLGSLGDVAHCLEVL- NC_005147_HCoV-OC43_OC43_nsp3_27 -----------------------------DFVDLESVIQDYENVCFEFYTTEPEFVKVLG NC_006577_CoV-HKU1A_N1_nsp3_2633 TGDNDDQIVVTGDDVDD-IESIYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNG AY884001_CoV-HKU1B_N2_nsp3_2627. TGDNDDQIVVTGDDVDD-IESVYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNG DQ339101_CoV-HKU1C_N5_nsp3_2627. TGDNDDQIVVTGDDVDD-IESIYDFDTYKALLVFNDVYNDALFVSYGSSVETETYFKVNG NC_003045_BCoV_BCoV-ENT_nsp3_276 -----------------------------DFADLESVIQDYENVCFEFYTTEPEFVKVLD NC_001846_MHV_MHV-A59_nsp3_2706. EAFEIEKVEDSILDELQTELNAPADKTYEDVLAFDAVCSEALSAFYAVPSDETH-FKVCG NC_007732_PHEV_VW572_nsp3_2764.. -----------------------------DFVDLESVIQDYENVCFDFYTTEPEFIKVLD EF424621_AntelopeCoV_US/OH1/2003 -----------------------------DFADLESVIQDYENVCFEFYTTEPEFVKVLD EF424622_GiCoV_US/OH3-TC/2006_ns -----------------------------DFADLESVIQDYENVCFEFYTTEPEFVKVLD NC_004718_SARS-human_Tor2_nsp3_2 ------------------------------------------------------------ AY304488_SARS-civet_SZ16_nsp3_27 ------------------------------------------------------------ NC_009694_SARS-bat_HKU3-1_nsp3_2 ------------------------------------------------------------ AY545919_SARS-badger_CFB/SZ/94/0 ------------------------------------------------------------ NC_009019_Bat-CoV-HKU4_B04f ---------------------------------------DSTPSTSTVVGENDLSVKPM- NC_009020_Bat-CoV-HKU5_LMH3f ---------------------------QVANAAEVESCEAEVSSSIPLHEDANAAKANDC NC_009021_Bat-CoV-HKU9_BF_005I ------------------------------------------------------------ NC_001451_IBV_Beaudette_nsp3_254 ---------EETFVVNN---------------CFEGAVKPLPQKVVDVLGDWGEAVDAQE AY646283_IBV-partridge_Partridge ---------EETFVINN---------------CFEGAVKQLPKSVVDVLGDWGEAVDAQE AY641576_IBV-peafowl_Peafowl/GD/ ---------EETFVVNN---------------CFEGAVKPLPQKVVDVLGDWGEAVDAQ- NC_002645_HCoV-229E_inf-1_nsp3_2 ---LKDLHTGFMVMDYKCSCTSGRLEESGAVLFCTPTKKA---FPYGTCLNCNAPRMCTI NC_005831_HCoV-NL63_AmsterdamI_n ---LKEKYTCSITFEMSCDCGKKFDDQVGCLFWIMPYTKL---FQKGECCICHKMQTYKL NC_002306_TGEV_PUR46-MAD_nsp3_29 ---LNDYSTAKIVLAAKCGCGEKEIVLERAVFKLTPLKES---FNYGVCGDCMQVNTCRF NC_003436_PEDV_CV777_nsp3_2982.. ---TKDLHTLKITCSVVCGCGTGERIYEGCAFRMTPTLEP---FPYGACAQCAQVLMHTF DQ811787_PRCV_ISU-1_nsp3_2941..7 ---LNDYSTAKIVLAATCGCGEKEIVLERAVFKLTPLKES---FSYGVCGDCMQVNTCRF AY994055_FIPV_79-1146_nsp3_2948. ---LNDYSTAKVTLSAKCGCGVKEIVLERTVFKLTPLRNE---FKYGVCGDCKQINMCKF NC_009657_BtCoV-G1_BtCoV/512/200 ---LKDRDGMSITCTIDCGCGPGVRVYENAIFRFTPLKTA---FPMGRCLICSKTLMHTI EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---LKDAKTAKVTVEVTCDCSSNFEELSGAFFRFLPLRSK---FEYGSCFACHGTRYYRV NC_005147_HCoV-OC43_OC43_nsp3_27 LYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK---QQYSQLFVDTLVNKIPA NC_006577_CoV-HKU1A_N1_nsp3_2633 LWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYK---VGYNQSFVDYLLTTIPK AY884001_CoV-HKU1B_N2_nsp3_2627. LWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYK---VGYNQSFVDYLLTTIPK DQ339101_CoV-HKU1C_N5_nsp3_2627. LWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYK---VGYNQSFVDYLLTTIPK NC_003045_BCoV_BCoV-ENT_nsp3_276 LYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK---QQYSQLFVDTLVNKIPA NC_001846_MHV_MHV-A59_nsp3_2706. FYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYK---AGYDQCFVDKLVKSVPK NC_007732_PHEV_VW572_nsp3_2764.. LYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK---QQYSQLFVDTLVNKIPA EF424621_AntelopeCoV_US/OH1/2003 LYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK---QQYSQLFVDTLVNKIPA EF424622_GiCoV_US/OH3-TC/2006_ns LYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK---QQYSQLFVDTLVNKIPA NC_004718_SARS-human_Tor2_nsp3_2 ---------------------------------------------TEQSEIEPEPEPTPE AY304488_SARS-civet_SZ16_nsp3_27 ---------------------------------------------TEQSEIEPEPEPTPE NC_009694_SARS-bat_HKU3-1_nsp3_2 ------------------------------------------------IEAEPEPEPLPE AY545919_SARS-badger_CFB/SZ/94/0 ---------------------------------------------TEQSEIEPEPEPTPE NC_009019_Bat-CoV-HKU4_B04f ---SRVAETDDVLELETAVVGGPVSDVTAIVTND--IVSV---EQAQQCGVSSLP--IQD NC_009020_Bat-CoV-HKU5_LMH3f AEGMPALDSTETVSKLSVDTPVGDVTQDDATSSNATVISEDVHTATHSKGLVAVPEVVPE NC_009021_Bat-CoV-HKU9_BF_005I --------------------------------------------GAEDCDNTIQDVDVAT NC_001451_IBV_Beaudette_nsp3_254 QLCQQEPLQHTFEEPVENSTGSSKTMTEQVVVEDQEL-PV---VEQDQDVVVYTPTDLEV AY646283_IBV-partridge_Partridge KSLNDVADSSSVSLPIEEPVIIHEQEFVPVVEEELDVIVC---TPAELSVVKEAPGEVDE AY641576_IBV-peafowl_Peafowl/GD/ -------EQIAQTTSEETPISSLEATIEQVVVEEQKIISV---VEEEQQVAVYTPADLQV NC_002645_HCoV-229E_inf-1_nsp3_2 RQLQGTIIFVQQKPEPVNPVS-FVVKP--------------------VCSSIFRGAVSCG NC_005831_HCoV-NL63_AmsterdamI_n VSMKGTGVFVQDPA-PIDIDA-FPVKP--------------------ICSSVYLGVKGSG NC_002306_TGEV_PUR46-MAD_nsp3_29 LSVEGSGVFVHDILSKQTPEAMFVVKP--------------------VMHAVYTGTTQNG NC_003436_PEDV_CV777_nsp3_2982.. KSIVGTGIFCRDT--TALSLDSLVVKP--------------------LCAAAFIG-KDSG DQ811787_PRCV_ISU-1_nsp3_2941..7 LSVEGSGVFVHDILSKQTPESMFIVKP--------------------VMHAVYTGTTQNG AY994055_FIPV_79-1146_nsp3_2948. ASVEGSGVFVHDRIEKQTPVSQFIVTP--------------------TMHAVYTGTTQSG NC_009657_BtCoV-G1_BtCoV/512/200 TQMKGTGIFCRDA--TALDVDTLVVKP--------------------LCAAVYVGAQDGG EF203064_Bat-CoV-HKU2_HKU2/GD/43 CGIVGSAIFSQTL--KPLDFNDLICDV--------------------ASASVFLG-DDCG NC_005147_HCoV-OC43_OC43_nsp3_27 NIVLPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHICKCG NC_006577_CoV-HKU1A_N1_nsp3_2633 AIVLPQGGFVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDALFFYGDIVSHVCKCG AY884001_CoV-HKU1B_N2_nsp3_2627. AIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCG DQ339101_CoV-HKU1C_N5_nsp3_2627. AIVLPQGGYVADFAYWFLNQFDINAYANWCCLKCGFSFDLNGLDAVFFYGDIVSHVCKCG NC_003045_BCoV_BCoV-ENT_nsp3_276 NIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCG NC_001846_MHV_MHV-A59_nsp3_2706. SIILPQGGYVADFAYFFLSQCSFKAYANWRCLECDMELKLQGLDAMFFYGDVVSHMCKCG NC_007732_PHEV_VW572_nsp3_2764.. NIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCG EF424621_AntelopeCoV_US/OH1/2003 NIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCG EF424622_GiCoV_US/OH3-TC/2006_ns NIVVPQGGYVADFAYWFLTLCDWQCVAYWKCIKCDLALKLKGLDAMFFYGDVVSHVCKCG NC_004718_SARS-human_Tor2_nsp3_2 EPVNQFTGYL-------------------------------------------------- AY304488_SARS-civet_SZ16_nsp3_27 EPVNQFTGYL-------------------------------------------------- NC_009694_SARS-bat_HKU3-1_nsp3_2 EPVNQFVGYL-------------------------------------------------- AY545919_SARS-badger_CFB/SZ/94/0 EPVNQFTGYL-------------------------------------------------- NC_009019_Bat-CoV-HKU4_B04f EASENQVHQVSDL--------------------------------------------QGN NC_009020_Bat-CoV-HKU5_LMH3f KALGTSVERMRSTSEWTVVETSL-----------------------------------KQ NC_009021_Bat-CoV-HKU9_BF_005I SMTTP-----------------------------------------------------CG NC_001451_IBV_Beaudette_nsp3_254 AKETAEE--VDEFILIFAVPKEEVVSQ-------------------------------KD AY646283_IBV-partridge_Partridge FILIPSVSNGEEVVSTVSAPQQEESRE------------------------EVVPDILQQ AY641576_IBV-peafowl_Peafowl/GD/ VEETP-----DEFILIADVSTEEIVPH------------------------------EEK NC_002645_HCoV-229E_inf-1_nsp3_2 HYQTNIYSQNLCVDGFGVNKIQPWT----NDALNTICIKDADY--------------NAK NC_005831_HCoV-NL63_AmsterdamI_n HYQTNLYSFNKAIDGFGVFDIK-------NSSVNTVCFVDVDF----------------- NC_002306_TGEV_PUR46-MAD_nsp3_29 HYMVDDIEHGYCVDGMGIKPLK-------KRCYTSTLFINANVMTRAEKPKQEFKVEKVE NC_003436_PEDV_CV777_nsp3_2982.. HYVTNFYDAAMAIDGYGRHQIK-------YDTLNTICVKDVNW----------------- DQ811787_PRCV_ISU-1_nsp3_2941..7 HYMVDDIEHGYCVDGMGIKPLK-------KRCYTSTLFINANVMTRAEKPKQEFKVGKVE AY994055_FIPV_79-1146_nsp3_2948. HYMIEDCIHDYCVDGMGIKPRK-------HKFYTSTLFLNANV-------------MTAK NC_009657_BtCoV-G1_BtCoV/512/200 HYLTNMYDANMAVDGHGRHPIK-------FNTINTLCYKDVDW----------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 HYLINDYDKRLCVDGMGVYKIR-------HNTIDTIVVKDADI----------------- NC_005147_HCoV-OC43_OC43_nsp3_27 ESMVLIDVDVPFTAHFALKDKLFCAFITKRIVYKAACVVDVNDSHSMAVVDGKQIDDHRI NC_006577_CoV-HKU1A_N1_nsp3_2633 HNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFV AY884001_CoV-HKU1B_N2_nsp3_2627. HNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFV DQ339101_CoV-HKU1C_N5_nsp3_2627. HNMTLIAADLPCTLHFSLFDDNFCAFCTPKKIFIAACAVDVNVCHSVAVIGDEQIDGKFV NC_003045_BCoV_BCoV-ENT_nsp3_276 ESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRV NC_001846_MHV_MHV-A59_nsp3_2706. NSMTLLSADIPYTLHFGVRDDKFCAFYTPRKVFRAACAVDVNDCHSMAVVEGKQIDGKVV NC_007732_PHEV_VW572_nsp3_2764.. ESMVLIDVNVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRI EF424621_AntelopeCoV_US/OH1/2003 ESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRV EF424622_GiCoV_US/OH3-TC/2006_ns ESMVLIDVDVPFTAHFALKDKLFCAFITKRSVYKAACVVDVNDSHSMAVVDGKQIDDHRV NC_004718_SARS-human_Tor2_nsp3_2 ------------------------------------------------------------ AY304488_SARS-civet_SZ16_nsp3_27 ------------------------------------------------------------ NC_009694_SARS-bat_HKU3-1_nsp3_2 ------------------------------------------------------------ AY545919_SARS-badger_CFB/SZ/94/0 ------------------------------------------------------------ NC_009019_Bat-CoV-HKU4_B04f ELLCSETKVEIVQPRQDLKPRR-----SRKSKVDLSKYKHT------------------- NC_009020_Bat-CoV-HKU5_LMH3f ETAVIVKNDSSAKPQRVKKP---------KAENPLKNFKHI------------------- NC_009021_Bat-CoV-HKU9_BF_005I YT---------------------------------------------------------- NC_001451_IBV_Beaudette_nsp3_254 GAQIKQEPIQVVKPQREKKAKK-------FKVKPATCEKPK------------------- AY646283_IBV-partridge_Partridge EEPKIEEPPQVVKIQRERKAKK-------FKVKPTTQKAPN------------------- AY641576_IBV-peafowl_Peafowl/GD/ ESQIEQEPIQVVKSQREKKAKK-------FKVKSTTCEKPK------------------- NC_002645_HCoV-229E_inf-1_nsp3_2 VEISVTPIKNTVDTTPKEEFVVKEKLNAF--LVHDNVAFYQGDVDTVVNGVDFDF----I NC_005831_HCoV-NL63_AmsterdamI_n ----------------HSVEIEAGEVKPF--AVYKNVKFYLGDISHLVNCVSFDF----V NC_002306_TGEV_PUR46-MAD_nsp3_29 QQPIVEENKSSIEKEEIQSPKNDDLILPF--YKAGKLSFYQGALDVLINFLEPDV----I NC_003436_PEDV_CV777_nsp3_2982.. ----------TAPLVPAVDSVVEPVVKPF--YSYKNVDFYQGDFSDLVK-LPCDF----V DQ811787_PRCV_ISU-1_nsp3_2941..7 QQLIVEDSKSSIEKEEIQSPKNDDLILPF--YKVGKLSFYHGALDVLINFLEPDV----I AY994055_FIPV_79-1146_nsp3_2948. SKTMVEPPVPVEDKCVEDCQSPKDLILPF--YKAGKVSFYQGDLDVLINFLEPDV----L NC_009657_BtCoV-G1_BtCoV/512/200 -----------------EVSNGSCDVKPF--LTYKNIEFYQGELSALLS-VNHDF----V EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---------------------KPSTVAPF--TEYCNVKFYQGDFKDLAG-LSHDF----V NC_005147_HCoV-OC43_OC43_nsp3_27 TSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKLVKAEV----V NC_006577_CoV-HKU1A_N1_nsp3_2633 TKFSGDKFDFIVGYGMSFSMSSFELPQLYGLCITPNVCFVKGDIINVARLVKADV----I AY884001_CoV-HKU1B_N2_nsp3_2627. TKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADV----I DQ339101_CoV-HKU1C_N5_nsp3_2627. TKFSGDKFDFIVGYGMSFSMSSFELAQLYGLCITPNVCFVKGDIINVARLVKADV----I NC_003045_BCoV_BCoV-ENT_nsp3_276 TSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEV----V NC_001846_MHV_MHV-A59_nsp3_2706. TKFIGDKFDFMVGYGMTFSMSPFELAQLYGSCITPNVCFVKGDVIKVVRLVNAEV----I NC_007732_PHEV_VW572_nsp3_2764.. TSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEV----V EF424621_AntelopeCoV_US/OH1/2003 TSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEV----V EF424622_GiCoV_US/OH3-TC/2006_ns TSITSDKFDFIIGHGMSFSMTTFEIAQLYGSCITPNVCFVKGDIIKVSKRVKAEV----V NC_004718_SARS-human_Tor2_nsp3_2 -------------------------------KLTDNVAIKCVDIVKEAQSANPMV----I AY304488_SARS-civet_SZ16_nsp3_27 -------------------------------KLTDNVAIKCADIVKEAQSANPMV----I NC_009694_SARS-bat_HKU3-1_nsp3_2 -------------------------------KLTDNVAIKCIDIVKEAQSAKPTV----I AY545919_SARS-badger_CFB/SZ/94/0 -------------------------------KLTDNVAIKCVDIVKEAQSANPMV----I NC_009019_Bat-CoV-HKU4_B04f -------------------------------VINNSVTLVLGDAIQIASLLPKCI----L NC_009020_Bat-CoV-HKU5_LMH3f -------------------------------VLNNDVTLVFGDAIAVARATEDCI----L NC_009021_Bat-CoV-HKU9_BF_005I -------------------------------KIAEHVYIKCADIVQEARNYSYAV----L NC_001451_IBV_Beaudette_nsp3_254 -------------------------------FLEYKTCV--GDLTVVIAKALDEFKEFCI AY646283_IBV-partridge_Partridge -------------------------------CLEYKTCV--GDLTVVIAKALDEFKEFCL AY641576_IBV-peafowl_Peafowl/GD/ -------------------------------FLEYTTCV--GDLTVVIAKALDEFKEFCI . . : NC_002645_HCoV-229E_inf-1_nsp3_2 VNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE--CDSL---RI NC_005831_HCoV-NL63_AmsterdamI_n VNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLE--CEKF---NV NC_002306_TGEV_PUR46-MAD_nsp3_29 VNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHL---SV NC_003436_PEDV_CV777_nsp3_2982.. VNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLE--ALGL---KV DQ811787_PRCV_ISU-1_nsp3_2941..7 VNAANGDLKHMGGVARAIDVVTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHL---SV AY994055_FIPV_79-1146_nsp3_2948. VNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHL---SV NC_009657_BtCoV-G1_BtCoV/512/200 VNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIK--CKEH---SI EF203064_Bat-CoV-HKU2_HKU2/GD/43 VNAANCNLAHGGGVAKAIDHHTGGKLQKLSTSFVKKNGKVATGECVMID--TGKL---KV NC_005147_HCoV-OC43_OC43_nsp3_27 VNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVST--GGKLCK-TV NC_006577_CoV-HKU1A_N1_nsp3_2633 VNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVST--GGKLCK-TI AY884001_CoV-HKU1B_N2_nsp3_2627. VNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVST--GGKLCK-TI DQ339101_CoV-HKU1C_N5_nsp3_2627. VNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMVKSKGVCQVGDCYVST--GGKLCK-TI NC_003045_BCoV_BCoV-ENT_nsp3_276 VNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVST--GGKLCK-TV NC_001846_MHV_MHV-A59_nsp3_2706. VNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKAQGVCQVGECYESA--GGKLCK-KV NC_007732_PHEV_VW572_nsp3_2764.. VNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVST--GGKLCK-TV EF424621_AntelopeCoV_US/OH1/2003 VNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVST--GGKLCK-TV EF424622_GiCoV_US/OH3-TC/2006_ns VNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKSKGVCATGDCYVST--GGKLCK-TV NC_004718_SARS-human_Tor2_nsp3_2 VNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS--GHNLAK-KC AY304488_SARS-civet_SZ16_nsp3_27 VNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS--GHNLAK-KC NC_009694_SARS-bat_HKU3-1_nsp3_2 VNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLS--GHNLAE-KC AY545919_SARS-badger_CFB/SZ/94/0 VNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS--GHNLAK-KC NC_009019_Bat-CoV-HKU4_B04f VNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLK--GHGLAD-AI NC_009020_Bat-CoV-HKU5_LMH3f VNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLK--GHGLAT-GI NC_009021_Bat-CoV-HKU9_BF_005I VNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLS--SHGLASHGI NC_001451_IBV_Beaudette_nsp3_254 VNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTPSFVKGIQ--CV AY646283_IBV-partridge_Partridge VNAANDYMFHGGGVAKAIADFCGPDFVEYCEDYVKKHGPQK---RLVTPSYVKGIQ--CV AY641576_IBV-peafowl_Peafowl/GD/ VNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ--CV **.** : * .*:* .: . : NC_002645_HCoV-229E_inf-1_nsp3_2 FNVVGP--RKG-KHERDLLIKAYNTINNEQGTP-LTPILSCGIFGIKLETSLEVLLDVCN NC_005831_HCoV-NL63_AmsterdamI_n FNVVGP--RTG-KHEHSLLVEAYNSILFENGIP-LMPLLSCGIFGVRIENSLKALFSCDI NC_002306_TGEV_PUR46-MAD_nsp3_29 LNAVGP--RNGDSRVEAKLCNVYKAIAKCEGKI-LTPLISVGIFNVRLETSLQCLLKTVN NC_003436_PEDV_CV777_nsp3_2982.. FNVVGP--RKG-KHAPELLVKAYKSVFANSGVA-LTPLISVGIFSVPLEESLSAFLACVG DQ811787_PRCV_ISU-1_nsp3_2941..7 LNAVGP--RNGDSRVEAKLCNVYKAIAKCEGKI-LTPLISVGIFNVRLETSLQCLLKTVN AY994055_FIPV_79-1146_nsp3_2948. LNAVGP--RNGDSRVEGKLCNVYKAIAKCDGKI-LTPLISVGIFKVKLEVSLQCLLKTVT NC_009657_BtCoV-G1_BtCoV/512/200 LNVVGP--RKG-KHAAELLTKAYTFVFKQKGVP-LMPLLSVGIFKVPITESLAAFLACVG EF203064_Bat-CoV-HKU2_HKU2/GD/43 LNAVGP--RKG-KDAESLLNTVYTNIFARKGVP-LMPLISCGIFGFDLKDSLRAFLAACG NC_005147_HCoV-OC43_OC43_nsp3_27 LNVVGPDARTQGKQSYVLLERVYKHLNNYDCV--VTTLISAGIFSVPSDVSLTYLLGTA- NC_006577_CoV-HKU1A_N1_nsp3_2633 LNIVGPDARQDGRQSYVLLARAYKHLNNYDCC--LSTLISAGIFSVPADVSLTYLLGVV- AY884001_CoV-HKU1B_N2_nsp3_2627. LNIVGPDARQDGRQSYVLLARAYKHLNNYDCC--LSTLISAGIFSVPADVSLTYLLGVV- DQ339101_CoV-HKU1C_N5_nsp3_2627. LNIVGPDARQDGRQSYVLLARAYKHLNNYDCC--LSTLISAGIFSVPADVSLTYLLGVV- NC_003045_BCoV_BCoV-ENT_nsp3_276 LNVVGPDARTQGKQSYALLERVYKHLNKYDCV--VTTLISAGIFSVPSDVSLTYLLGTA- NC_001846_MHV_MHV-A59_nsp3_2706. LNIVGPDARGHGKQCYSLLERAYQHINKCDNV--VTTLISAGIFSVPTDVSLTYLLGVV- NC_007732_PHEV_VW572_nsp3_2764.. LNVVGPDARAQGKQSYALLERVYKHLNKYDCV--VTTLISAGIFSVPSDVSLTYLLGTA- EF424621_AntelopeCoV_US/OH1/2003 LNVVGPDARTQGKQSYALLERVYKHLNKYDCV--VTTLISAGIFSVPSDVSLTYLLGTA- EF424622_GiCoV_US/OH3-TC/2006_ns LNVVGPDARTQGKQSYALLERVYKHLNKYDCV--VTTLISAGIFSVPSDVSLTYLLGTA- NC_004718_SARS-human_Tor2_nsp3_2 LHVVGPNLNAG--EDIQLLKAAYENFNSQDIL--LAPLLSAGIFGAKPLQSLQVCVQTV- AY304488_SARS-civet_SZ16_nsp3_27 LHVVGPNLNAG--EDIQLLKAAYENFNSQDTL--LAPLLSAGIFGAKLLQSLQVCVQTV- NC_009694_SARS-bat_HKU3-1_nsp3_2 LHVVGPNLNAG--EDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQSLKMCVEIV- AY545919_SARS-badger_CFB/SZ/94/0 LHVVGPNLNAG--EDIRLLKAAYENFNSQDTL--LAPLLSAGIFGAKPLQSLQVCVQTV- NC_009019_Bat-CoV-HKU4_B04f LHVVGPDARNN--EDAALLKRCYKAFNKHTIV--VTPLISAGIFSVDPKVSFEYLLANV- NC_009020_Bat-CoV-HKU5_LMH3f LHVVGPDARAN--QDIQLLKRCYKAFNKYPLV--VSPLISAGIFCVEPRVSLEYLLSVV- NC_009021_Bat-CoV-HKU9_BF_005I LHVVGPDKRLG--QDLALLDAVYAAYTGFDSV--LTPLVSAGIFGFTVEESLCSLVKNV- NC_001451_IBV_Beaudette_nsp3_254 NNVVGP--RHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFE AY646283_IBV-partridge_Partridge NNVVGP--RHADIDVFGKLLIAYKNVIVDGVVNYVVPVLSSGIFGVDFKLSIDAMRAAFK AY641576_IBV-peafowl_Peafowl/GD/ NNVVGP--RHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKMSIDAMREASK : *** . * * : .::* *** *: NC_002645_HCoV-229E_inf-1_nsp3_2 TKEVKVFVYTDTEVCKVK------------------------------------------ NC_005831_HCoV-NL63_AmsterdamI_n NKPLQVFVYSSNEEQAVL------------------------------------------ NC_002306_TGEV_PUR46-MAD_nsp3_29 DRGLNVFVYTDQERQTIE------------------------------------------ NC_003436_PEDV_CV777_nsp3_2982.. DRHCKCFCYGDKEREAII------------------------------------------ DQ811787_PRCV_ISU-1_nsp3_2941..7 DRGLNVFVYTDQERQTIE------------------------------------------ AY994055_FIPV_79-1146_nsp3_2948. DRDLNVFVYTDQERVTIE------------------------------------------ NC_009657_BtCoV-G1_BtCoV/512/200 DRVCKCFCYTDKERLAIQ------------------------------------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 DRHVKCFVYSDSERESVM------------------------------------------ NC_005147_HCoV-OC43_OC43_nsp3_27 KKQVVLVSNNQEDFDLIS------------------------------------------ NC_006577_CoV-HKU1A_N1_nsp3_2633 DKQVILVSNNKEDFDIIQ------------------------------------------ AY884001_CoV-HKU1B_N2_nsp3_2627. DKQVILVSNNKEDFDIIQ------------------------------------------ DQ339101_CoV-HKU1C_N5_nsp3_2627. DKQVILVSNNKEDFDIIQ------------------------------------------ NC_003045_BCoV_BCoV-ENT_nsp3_276 EKQVVLVSNNQEDFDLIS------------------------------------------ NC_001846_MHV_MHV-A59_nsp3_2706. TKNVILVSNNQDDFDVIE------------------------------------------ NC_007732_PHEV_VW572_nsp3_2764.. TKQVVLVSNNQEDFDLIS------------------------------------------ EF424621_AntelopeCoV_US/OH1/2003 EKQVVLVSNNQEDFDLIS------------------------------------------ EF424622_GiCoV_US/OH3-TC/2006_ns EKQVVLVSNNQEDFDLIS------------------------------------------ NC_004718_SARS-human_Tor2_nsp3_2 RTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPK AY304488_SARS-civet_SZ16_nsp3_27 RTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPK NC_009694_SARS-bat_HKU3-1_nsp3_2 RTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQP-VAEKPVDVKPK AY545919_SARS-badger_CFB/SZ/94/0 RTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPK NC_009019_Bat-CoV-HKU4_B04f TTTTYVVVNNEDIYNTLA------------------------------------------ NC_009020_Bat-CoV-HKU5_LMH3f HTKTYVVVNSEKVYNDLA------------------------------------------ NC_009021_Bat-CoV-HKU9_BF_005I ACTTYVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAEAVEVQESIVDQVETPSLGA NC_001451_IBV_Beaudette_nsp3_254 GCTIRVLLFSLSQ----------------------------------------------- AY646283_IBV-partridge_Partridge DCNIRVLLFSLNQ----------------------------------------------- AY641576_IBV-peafowl_Peafowl/GD/ GCAIRVLLFSLSQ----------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp3_2 ------------------------------------------------------------ NC_005831_HCoV-NL63_AmsterdamI_n ------------------------------------------------------------ NC_002306_TGEV_PUR46-MAD_nsp3_29 ------------------------------------------------------------ NC_003436_PEDV_CV777_nsp3_2982.. ------------------------------------------------------------ DQ811787_PRCV_ISU-1_nsp3_2941..7 ------------------------------------------------------------ AY994055_FIPV_79-1146_nsp3_2948. ------------------------------------------------------------ NC_009657_BtCoV-G1_BtCoV/512/200 ------------------------------------------------------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------------------------------------------ NC_005147_HCoV-OC43_OC43_nsp3_27 ------------------------------------------------------------ NC_006577_CoV-HKU1A_N1_nsp3_2633 ------------------------------------------------------------ AY884001_CoV-HKU1B_N2_nsp3_2627. ------------------------------------------------------------ DQ339101_CoV-HKU1C_N5_nsp3_2627. ------------------------------------------------------------ NC_003045_BCoV_BCoV-ENT_nsp3_276 ------------------------------------------------------------ NC_001846_MHV_MHV-A59_nsp3_2706. ------------------------------------------------------------ NC_007732_PHEV_VW572_nsp3_2764.. ------------------------------------------------------------ EF424621_AntelopeCoV_US/OH1/2003 ------------------------------------------------------------ EF424622_GiCoV_US/OH3-TC/2006_ns ------------------------------------------------------------ NC_004718_SARS-human_Tor2_nsp3_2 IKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVI AY304488_SARS-civet_SZ16_nsp3_27 IKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVI NC_009694_SARS-bat_HKU3-1_nsp3_2 IKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVI AY545919_SARS-badger_CFB/SZ/94/0 IKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVI NC_009019_Bat-CoV-HKU4_B04f ------------------------------------------------------------ NC_009020_Bat-CoV-HKU5_LMH3f ------------------------------------------------------------ NC_009021_Bat-CoV-HKU9_BF_005I VDTVDSNADSGLNETARSPENVVGS----------------------------------- NC_001451_IBV_Beaudette_nsp3_254 ------------------------------------------------------------ AY646283_IBV-partridge_Partridge ------------------------------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------------------------------------ NC_002645_HCoV-229E_inf-1_nsp3_2 --------------DFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRVDGKFSYF----- NC_005831_HCoV-NL63_AmsterdamI_n -------------------------KFLDGLDLTPVIDDVDVVKPFRVEGNFSFF----- NC_002306_TGEV_PUR46-MAD_nsp3_29 ----------------------------------------------------NFF----- NC_003436_PEDV_CV777_nsp3_2982.. KYMDGLVDAIFKEALVDTTPVQEDVQQVSQKPVLP------NFEPFRIEGAHAFY----- DQ811787_PRCV_ISU-1_nsp3_2941..7 ----------------------------------------------------NFF----- AY994055_FIPV_79-1146_nsp3_2948. ----------------------------------------------------NFF----- NC_009657_BtCoV-G1_BtCoV/512/200 ----NFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFRIEGDAKFY----- EF203064_Bat-CoV-HKU2_HKU2/GD/43 --------------KFLMTPFEENAATKEVLETPVVEITTDVVAPFYTIGSHKFY----- NC_005147_HCoV-OC43_OC43_nsp3_27 -----------------------------------------KCQITAVEGTKKLA----- NC_006577_CoV-HKU1A_N1_nsp3_2633 -----------------------------------------KCQITSVVGTKALA----- AY884001_CoV-HKU1B_N2_nsp3_2627. -----------------------------------------KCQITSVVGTKALA----- DQ339101_CoV-HKU1C_N5_nsp3_2627. -----------------------------------------KCQITSVVGTKALA----- NC_003045_BCoV_BCoV-ENT_nsp3_276 -----------------------------------------KCQITAVEGTKKLA----- NC_001846_MHV_MHV-A59_nsp3_2706. -----------------------------------------KCQVTSVAGTKALS----- NC_007732_PHEV_VW572_nsp3_2764.. -----------------------------------------KCQITAVEGTKKLA----- EF424621_AntelopeCoV_US/OH1/2003 -----------------------------------------KCQITAVEGTKKLA----- EF424622_GiCoV_US/OH3-TC/2006_ns -----------------------------------------KCQITAVEGTKKLA----- NC_004718_SARS-human_Tor2_nsp3_2 TSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKS AY304488_SARS-civet_SZ16_nsp3_27 TSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKS NC_009694_SARS-bat_HKU3-1_nsp3_2 TSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKS AY545919_SARS-badger_CFB/SZ/94/0 TSGDITCVVIPSKKTGGTTEMLSRALKKVPVAEYITTYPGQGCAGYTLEEAKTALKKCKS NC_009019_Bat-CoV-HKU4_B04f ----------------------------TPSKPDGLVYSFEGWRGTVRTAKNYGF----- NC_009020_Bat-CoV-HKU5_LMH3f ----------------------------APKPPTGLTYSHEGWRGIIRNAKSFGF----- NC_009021_Bat-CoV-HKU9_BF_005I VPDDVVADVESCVRDLVRQVVKKVKRDKRPPPIVPQQTVEQQPQEISSPGDCNTVLVDVV NC_001451_IBV_Beaudette_nsp3_254 ------------------------------------------------------------ AY646283_IBV-partridge_Partridge ------------------------------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------------------------------------ NC_002645_HCoV-229E_inf-1_nsp3_2 ------TEDL-----------------------------LCVADDKPIVLFTDSMLTLDD NC_005831_HCoV-NL63_AmsterdamI_n ------DCG------------------------------VNALDGDIYLLFTNSILMLDK NC_002306_TGEV_PUR46-MAD_nsp3_29 ------SC---------------------------------------------------- NC_003436_PEDV_CV777_nsp3_2982.. ------ECNPEG---------------------------LMSLGADKLVLFTNSNLDFCS DQ811787_PRCV_ISU-1_nsp3_2941..7 ------SC---------------------------------------------------- AY994055_FIPV_79-1146_nsp3_2948. ------NG---------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/200 ------DLTPSM---------------------------VQSLQVTRLVSFTNSDLCLGS EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------DCNSVEP--------------------------ILGLGVKNIVLFTDQVLSVKD NC_005147_HCoV-OC43_OC43_nsp3_27 ------AR-------------------------------LSFNVGRSIVYETDANKLILI NC_006577_CoV-HKU1A_N1_nsp3_2633 ------VR-------------------------------LTANVGRVIKFETDAYKLFLS AY884001_CoV-HKU1B_N2_nsp3_2627. ------VR-------------------------------LTANVGRVIKFETDAYKLFLS DQ339101_CoV-HKU1C_N5_nsp3_2627. ------VR-------------------------------LTANVGRVIKFETDAYKLFLS NC_003045_BCoV_BCoV-ENT_nsp3_276 ------ER-------------------------------LSFNVGRSIVYETDANKLILS NC_001846_MHV_MHV-A59_nsp3_2706. ------LQ-------------------------------LAKNLCRDVKFVTNACSSLFS NC_007732_PHEV_VW572_nsp3_2764.. ------ER-------------------------------LSFNVGRSIVYETDANKLLLS EF424621_AntelopeCoV_US/OH1/2003 ------ER-------------------------------LSFNVGRSIVYETDANKLILS EF424622_GiCoV_US/OH3-TC/2006_ns ------ER-------------------------------LSFNVGRSIVYETDANKLILS NC_004718_SARS-human_Tor2_nsp3_2 AFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKI AY304488_SARS-civet_SZ16_nsp3_27 AFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKI NC_009694_SARS-bat_HKU3-1_nsp3_2 AFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKV AY545919_SARS-badger_CFB/SZ/94/0 AFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKI NC_009019_Bat-CoV-HKU4_B04f ------TCF------------------------------ICTEYSANVKFLRTKGVDTTK NC_009020_Bat-CoV-HKU5_LMH3f ------TCF------------------------------ICTDQSANAKLLKGRGVDLTK NC_009021_Bat-CoV-HKU9_BF_005I SMSFSAMVNFGKEKG------------------------LLIPVVIDYPAFLKVLKRFSP NC_001451_IBV_Beaudette_nsp3_254 ------------------------------------------------------------ AY646283_IBV-partridge_Partridge ------------------------------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------------------------------------ NC_002645_HCoV-229E_inf-1_nsp3_2 RGLALDNALSGVLSAAIKDCVDINKA----------------IPSGNLIKFDIG------ NC_005831_HCoV-NL63_AmsterdamI_n QGQLLDTKLNGILQQAALDYLATVKT----------------VPAGNLVKLFVE------ NC_002306_TGEV_PUR46-MAD_nsp3_29 ------------------------------------------------------------ NC_003436_PEDV_CV777_nsp3_2982.. VGKCLNDVTSGALLEAINVFKKSNKT----------------VPAGNCVTLDCA------ DQ811787_PRCV_ISU-1_nsp3_2941..7 ------------------------------------------------------------ AY994055_FIPV_79-1146_nsp3_2948. ------------------------------------------------------------ NC_009657_BtCoV-G1_BtCoV/512/200 FVRDCDGYVQGSLGGAIANYKKSNPV----------------LPAGNCVTLKCD------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 FGVVVDKHLNGLLSDMSNKYVGDHKA----------------VPFGNILSLDCG------ NC_005147_HCoV-OC43_OC43_nsp3_27 NDVAF---------VSTFNVLQDVLS----------------LRHDIALDDDAR------ NC_006577_CoV-HKU1A_N1_nsp3_2633 GDDCF---------VSNSSVIQEVLL----------------LRHDIQLNNDVR------ AY884001_CoV-HKU1B_N2_nsp3_2627. GDDCF---------VSNSSVIQEVLL----------------LRHDIQLNNDVR------ DQ339101_CoV-HKU1C_N5_nsp3_2627. GDDCF---------VSNSSVIQEVLL----------------LRHDIQLNNDVR------ NC_003045_BCoV_BCoV-ENT_nsp3_276 NDVAF---------VSTFNVLQDVLS----------------LRHDIALDDDAR------ NC_001846_MHV_MHV-A59_nsp3_2706. -ESCF---------VSSYDVLQEVEA----------------LRHDIQLDDDAR------ NC_007732_PHEV_VW572_nsp3_2764.. NEVAF---------VSTFNVLQDVLS----------------LRHDIILEDDAR------ EF424621_AntelopeCoV_US/OH1/2003 NDVAF---------VSTFNVLQDVLS----------------LRHDIALDDDAR------ EF424622_GiCoV_US/OH3-TC/2006_ns NDVAF---------VSTFNVLQDVLS----------------LRHDIALDDDAR------ NC_004718_SARS-human_Tor2_nsp3_2 QEGIVD-YGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLK AY304488_SARS-civet_SZ16_nsp3_27 QEGIVD-YGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLK NC_009694_SARS-bat_HKU3-1_nsp3_2 QEGIVD-YGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK AY545919_SARS-badger_CFB/SZ/94/0 QEGIVD-YGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLK NC_009019_Bat-CoV-HKU4_B04f KIQTVD--GVSYYLYSARDALTDVIA-AANGCSGICAMPFGYVTHGLDLAQSGNYVRQVK NC_009020_Bat-CoV-HKU5_LMH3f KTQTVD--GVKYYLYSSKDPLTDIIT-AANACKGICAMPIGYVTHGLDLAQAGQQVKKIT NC_009021_Bat-CoV-HKU9_BF_005I KEGLFSSNGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLT NC_001451_IBV_Beaudette_nsp3_254 ------------------------------------------------------------ AY646283_IBV-partridge_Partridge ------------------------------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------------------------------------ NC_002645_HCoV-229E_inf-1_nsp3_2 ----SVVVYMCVVPSEKD-------------------------------KHLDNNVQRCT NC_005831_HCoV-NL63_AmsterdamI_n ----SCTIYMCVVPSIND-------------------------------LSFDKNLGRCV NC_002306_TGEV_PUR46-MAD_nsp3_29 ------------------------------------------------------------ NC_003436_PEDV_CV777_nsp3_2982.. ---NMISITMVVLPFDGD-------------------------------ANYDKNYARAV DQ811787_PRCV_ISU-1_nsp3_2941..7 ------------------------------------------------------------ AY994055_FIPV_79-1146_nsp3_2948. ------------------------------------------------------------ NC_009657_BtCoV-G1_BtCoV/512/200 ---GFISFTFVILPKEGD-------------------------------TNYEKNFNRAI EF203064_Bat-CoV-HKU2_HKU2/GD/43 -----AFTVVDAVSPFDG-------------------------------ASFEKQSGRTI NC_005147_HCoV-OC43_OC43_nsp3_27 ---TFVQSNVDVVP-----------------------------EGWRVVNKFYQINGVRT NC_006577_CoV-HKU1A_N1_nsp3_2633 ---DYLLSKMTSLP-----------------------------KDWRLINKFDVINGVKT AY884001_CoV-HKU1B_N2_nsp3_2627. ---DYLLSKMTSLP-----------------------------KDWRLINKFDVINGVKT DQ339101_CoV-HKU1C_N5_nsp3_2627. ---DYLLSKMTSLP-----------------------------KDWRLINKFDVINGVKT NC_003045_BCoV_BCoV-ENT_nsp3_276 ---TFVQSNVDVVP-----------------------------EGWRVVNKFYQINGVRT NC_001846_MHV_MHV-A59_nsp3_2706. ---VFVQANMDCLP-----------------------------TDWRLVNKFDSVDGVRT NC_007732_PHEV_VW572_nsp3_2764.. ---TFVQSNVDIVP-----------------------------EGWRVVNKFDQINGVRT EF424621_AntelopeCoV_US/OH1/2003 ---TFVQSNVDVVP-----------------------------EGWRVVNKFYQINGVRT EF424622_GiCoV_US/OH3-TC/2006_ns ---TFVQSNVDVVP-----------------------------EGWRVVNKFYQINGVRT NC_004718_SARS-human_Tor2_nsp3_2 APAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETV--SLAGSYRDW----SYSGQRTELG AY304488_SARS-civet_SZ16_nsp3_27 APAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETV--SLAGSYRDW----SYSGQRTELG NC_009694_SARS-bat_HKU3-1_nsp3_2 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETT--SLAGSYRDW----SYSGQRTELG AY545919_SARS-badger_CFB/SZ/94/0 APAIVSVSSPDAVTTYNGYLTSSSKTSEEHFVETV--SLAGSYRDW----SYSGQRTELG NC_009019_Bat-CoV-HKU4_B04f VPYVCLLASKEQIPIMNS--DVAIQTPETAFINNV--TSNGGYHSWHLVSGDLIVKDVCY NC_009020_Bat-CoV-HKU5_LMH3f VPYVCLLASKDQVPILNS--DVAVQTPEQSFINTV--IANGGYHCWHLVTGELIVKGVSY NC_009021_Bat-CoV-HKU9_BF_005I VPHTVVVPSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGARDWDVLQTTCTVDRKVY NC_001451_IBV_Beaudette_nsp3_254 -------------------------------------------------EHIDYFDVTCK AY646283_IBV-partridge_Partridge -------------------------------------------------DHIDYFDATCK AY641576_IBV-peafowl_Peafowl/GD/ -------------------------------------------------EHIDYFDATCK NC_002645_HCoV-229E_inf-1_nsp3_2 RKLNRLMCDIVCTIPADYILPLVLSSLTCN------VSFVGELKAA---EAKVITIKVTE NC_005831_HCoV-NL63_AmsterdamI_n RKLNRLKTCVIANVPAIDVLKKLLSSLTLT---VKFVVESNVMDVNDCFKNDNVVLKITE NC_002306_TGEV_PUR46-MAD_nsp3_29 ----------------------------------------------------SIPVNVTE NC_003436_PEDV_CV777_nsp3_2982.. VKVSKLKGKLVLAVDDATL-YSKLSHLSVLGFVSTPDDVERFYANK------SVVIKVTE DQ811787_PRCV_ISU-1_nsp3_2941..7 ----------------------------------------------------SIPVNVTE AY994055_FIPV_79-1146_nsp3_2948. ----------------------------------------------------TIPIKVTE NC_009657_BtCoV-G1_BtCoV/512/200 AKFLKLKGSLLVVVEDSSV-FNKISHASVAGYVAKPALVDTLFEAK------PVQVVVTQ EF203064_Bat-CoV-HKU2_HKU2/GD/43 RKLARLDGSTLCVLPNASALFDKLFALGDNFSFLVLDNVRPLFDNY--LKPKDVKVKVTA NC_005147_HCoV-OC43_OC43_nsp3_27 VKYFECTGGIDICSQDKVFGYVQQGIFNKA----TVAQIKALFLDK-------VDILLTV NC_006577_CoV-HKU1A_N1_nsp3_2633 VKYFECPNSIYICSQGKDFGYVCDGSFYKA----TVNQVCVLLAKK-------IDVLLTV AY884001_CoV-HKU1B_N2_nsp3_2627. VKYFECPNSIYICSQGKDFGYVCDGSFYKA----TVNQVCVLLAKK-------IDVLLTV DQ339101_CoV-HKU1C_N5_nsp3_2627. VKYFECPNSIYICSQGKDFGYVCDGSFYKA----TVNQVCVLLAKK-------IDVLLTV NC_003045_BCoV_BCoV-ENT_nsp3_276 VKYFECPGGIDICSQDKVFGYVQQGSFNKA----TVAQIKALFLDK-------VDILLTV NC_001846_MHV_MHV-A59_nsp3_2706. IKYFECPGGIFVSSQGKKFGYVQNGSFKEA----SVSQIRALLANK-------VDVLCTV NC_007732_PHEV_VW572_nsp3_2764.. VKYFECPGGIDICSQGKVFGYVQRGVFNKA----TVAQIKALFVDK-------VDVLLTV EF424621_AntelopeCoV_US/OH1/2003 VKYFECPGGIDICSQDKVFGYVQQGSFNKA----TVAQIKALFLDK-------VDILLTV EF424622_GiCoV_US/OH3-TC/2006_ns VKYFECPGGIDICSQDKVFGYVQQGSFNKA----TVAQIKALFLDK-------VDILLTV NC_004718_SARS-human_Tor2_nsp3_2 VEFLKRGDKIVYHTLESPVEFHLDGEVL------SLDKLKSLLSLR---EVKTIKVFTTV AY304488_SARS-civet_SZ16_nsp3_27 VEFLKRGDKIVYHTLESPVEFHLDGEVL------SLDKLKSLLSLR---EVKTIKVFTTV NC_009694_SARS-bat_HKU3-1_nsp3_2 VEFLKRGDKIVYHTTGSPIEFHLDGEVL------PLDKLKSLLSLR---EVKTIKVFTTV AY545919_SARS-badger_CFB/SZ/94/0 VEFLKRGDKIVYHTLESPVEFHLDGEVL------SLDKLKSLLSLR---EVKTIKVFTTV NC_009019_Bat-CoV-HKU4_B04f KKLLHWSGQTICYADNKFYVVKNDVALPFS----DLEACRAYLTSR-AAQQVNIEVLVTI NC_009020_Bat-CoV-HKU5_LMH3f RKLLNWSDQTICYADNKFYVVKGQIALPFD----SLEKCRTYLTSR-AAQQKNVDVLVTI NC_009021_Bat-CoV-HKU9_BF_005I KTICKRGNTYLCFDDTNLYAITGDVVLKFA----TVSKARAYLETKLCAPEPLIKVLTTV NC_001451_IBV_Beaudette_nsp3_254 QK----------------------------------------------------TIYLTE AY646283_IBV-partridge_Partridge QK----------------------------------------------------TIYLTE AY641576_IBV-peafowl_Peafowl/GD/ QK----------------------------------------------------TIYLTE : * NC_002645_HCoV-229E_inf-1_nsp3_2 D------GVNVHDVTVTTDKSFEQQV-GVIADKDKDLSGAVPSDLNTSELLTKAIDVD-- NC_005831_HCoV-NL63_AmsterdamI_n D------GINVKDVVVESSKSLGKQL-GVVSDGVDSFEGVLP--INTDTVLSVAPEVD-- NC_002306_TGEV_PUR46-MAD_nsp3_29 D------NVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDID-- NC_003436_PEDV_CV777_nsp3_2982.. D------TRSVKAVKVESTATYGQQI-GPCLVNDTVVTDNKP--VVADVVAKVVPNAN-- DQ811787_PRCV_ISU-1_nsp3_2941..7 D------NVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVVKVIDID-- AY994055_FIPV_79-1146_nsp3_2948. D------TVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVVKALDVD-- NC_009657_BtCoV-G1_BtCoV/512/200 D------QRSFHTVELSTSQTYGQQL-GDCVVEDKKVTNLKP--VSKDKVVSVVPNVD-- EF203064_Bat-CoV-HKU2_HKU2/GD/43 D------GRNVNDVVVTTAETFDAQL-GPSANGVESLVGVVPTPMDSGRVVNTAPDVN-- NC_005147_HCoV-OC43_OC43_nsp3_27 D------GVNFTNRFVPVGESFGKSL-GNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE NC_006577_CoV-HKU1A_N1_nsp3_2633 D------GVNFKSISLTVGEVFGKIL-GNVFCDGIDVTKLKCSDFYADKILYQYENLSLA AY884001_CoV-HKU1B_N2_nsp3_2627. D------GVNFKSISLTVGEVFGKIL-GNVFCDGIDVTKLKCSDFYADKILYQYENLSLA DQ339101_CoV-HKU1C_N5_nsp3_2627. D------GVNFKSISLTVGEVFGKIL-GNVFCDGIDVTKLKCSDFYADKILYQYENLSLA NC_003045_BCoV_BCoV-ENT_nsp3_276 D------GVNFTNRFVPVGESFGKSL-GNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE NC_001846_MHV_MHV-A59_nsp3_2706. D------GVNFRSCCVAEGEVFGKTL-GSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA NC_007732_PHEV_VW572_nsp3_2764.. D------GVNFTNRFIPVSESFGKIL-GNVFCDGVNVTKHKCDIKYKGKVFFQFDNLSSE EF424621_AntelopeCoV_US/OH1/2003 D------GVNFTNRFVSVGESFGKSL-GNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE EF424622_GiCoV_US/OH3-TC/2006_ns D------GVNFTNRFVSVGESFGKSL-GNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE NC_004718_SARS-human_Tor2_nsp3_2 D------NTNLHTQLVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL AY304488_SARS-civet_SZ16_nsp3_27 D------NTNLHTQLVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL NC_009694_SARS-bat_HKU3-1_nsp3_2 D------NTNLHTHIVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL AY545919_SARS-badger_CFB/SZ/94/0 D------NTNLHTQLVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL NC_009019_Bat-CoV-HKU4_B04f D------GVNFRTVILNDTTTFRKQL-GATFYKGVDISDAFPTVKMGGESLFVADNLSES NC_009020_Bat-CoV-HKU5_LMH3f D------GVNFRTVVLNNTTTYRVQL-GSVFYKGSDISDTIPTEKMSGEAVYLADNLSEA NC_009021_Bat-CoV-HKU9_BF_005I D------GINYSTVLVSTAQSYRAQI-GTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSA NC_001451_IBV_Beaudette_nsp3_254 D------GVKYRSIVLKPGDSLGQF--GQVYAKNKIV---FTADDVEDKEILYVPTTD-- AY646283_IBV-partridge_Partridge DGVKYRSGVKYRSVIVKPGDSLSQF--GQVFTRHKTV---FTADDVEDKEILFIPTTD-- AY641576_IBV-peafowl_Peafowl/GD/ D------GVKYRSVVLKPGDSLGQF--GQVFARNKVV---FSADDVEDKEILFIPTTD-- * . : * . . NC_002645_HCoV-229E_inf-1_nsp3_2 ----WVEFYGFKDAVT---FATVDHSAFAYESAVVNGIRVLKTSDNNCWVNAVCIALQYS NC_005831_HCoV-NL63_AmsterdamI_n ----WVAFYGFEKAAL---FASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYL NC_002306_TGEV_PUR46-MAD_nsp3_29 ----WQAHYGFRDAAA---FSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRL NC_003436_PEDV_CV777_nsp3_2982.. ----WDSHYGFDKAGE---FHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFA DQ811787_PRCV_ISU-1_nsp3_2941..7 ----WQAHYGFRDAAA---FSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRL AY994055_FIPV_79-1146_nsp3_2948. ----WNAYYGFPNAAA---FSASSHDAYEFDVVTHNNFIVHKQTDNNCWVNAICLALQRL NC_009657_BtCoV-G1_BtCoV/512/200 ----WDKHYGFVDAGI---FHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFA EF203064_Bat-CoV-HKU2_HKU2/GD/43 ----WSKHFGFSDAAA---FAVLDHSKFAFDSEVVDGKRALADSDNNCWVNATCLALQFL NC_005147_HCoV-OC43_OC43_nsp3_27 DLKAVRSSFNFDQKELLA-YYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSL NC_006577_CoV-HKU1A_N1_nsp3_2633 DISAVQSSFGFDQQQLLA-YYNFLTVCK-WSVVVNGPFFSFEQSHNNCYVNVACLMLQHI AY884001_CoV-HKU1B_N2_nsp3_2627. DISAVQSSFGFDQQQLLA-YYNFLTVCK-WSVVVNGPFFSFEQSHNNCYVNVACLMLQHI DQ339101_CoV-HKU1C_N5_nsp3_2627. DISAVQSSFGFDQQQLLA-YYNFLTVCK-WSVVVNGPFFSFEQSHNNCYVNVACLMLQHI NC_003045_BCoV_BCoV-ENT_nsp3_276 DLKAVRSSFNFDQKELLA-YYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL NC_001846_MHV_MHV-A59_nsp3_2706. DLVAVKDAFGFDEPQLLK-YYTMLGMCK-WSVVVCGNYFAFKQSNNNCYINVACLMLQHL NC_007732_PHEV_VW572_nsp3_2764.. ELKAVRSSFNFDQKELLA-YYNMLVNCNKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSL EF424621_AntelopeCoV_US/OH1/2003 DLKAVRSSFNFDQKELLA-YYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL EF424622_GiCoV_US/OH3-TC/2006_ns DLKAVRSSFNFDQKELLA-YYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSL NC_004718_SARS-human_Tor2_nsp3_2 RSEAF-EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL AY304488_SARS-civet_SZ16_nsp3_27 RSEAF-EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQI NC_009694_SARS-bat_HKU3-1_nsp3_2 RSEAF-EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQV AY545919_SARS-badger_CFB/SZ/94/0 RSEAF-EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQI NC_009019_Bat-CoV-HKU4_B04f EKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDML NC_009020_Bat-CoV-HKU5_LMH3f EKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDML NC_009021_Bat-CoV-HKU9_BF_005I EVTAIREYYGVDDSNIIARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDI NC_001451_IBV_Beaudette_nsp3_254 --KSILEYYGLDAQKY---VIYLQTLAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAA AY646283_IBV-partridge_Partridge --KAVLDYYGLDAKKY---VIYLHTLSQKWKIQCKDNFIQLEWRDGNCWINSAIVILQAA AY641576_IBV-peafowl_Peafowl/GD/ --KTILEYYGLDAQKY---VIYLQTLAQKWDVQYRDNFVILEWRDGNCWISSAIVLLQAA : : . **::. :: NC_002645_HCoV-229E_inf-1_nsp3_2 K-PHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLSKYLANEAQV NC_005831_HCoV-NL63_AmsterdamI_n K-PTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSIV NC_002306_TGEV_PUR46-MAD_nsp3_29 K-PQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEI NC_003436_PEDV_CV777_nsp3_2982.. R-FRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSV DQ811787_PRCV_ISU-1_nsp3_2941..7 K-PQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEI AY994055_FIPV_79-1146_nsp3_2948. K-PTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTLHKLVDLMSSDSAV NC_009657_BtCoV-G1_BtCoV/512/200 N-AKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSV EF203064_Bat-CoV-HKU2_HKU2/GD/43 K-PTFKYVGWEDLWNKLRSGDVAGFVHLLYYIEGVDKGAKGDVESTLSKLDKYIVSSGSV NC_005147_HCoV-OC43_OC43_nsp3_27 H-LTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAI NC_006577_CoV-HKU1A_N1_nsp3_2633 N-LKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI AY884001_CoV-HKU1B_N2_nsp3_2627. N-LKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI DQ339101_CoV-HKU1C_N5_nsp3_2627. N-LKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI NC_003045_BCoV_BCoV-ENT_nsp3_276 N-LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAI NC_001846_MHV_MHV-A59_nsp3_2706. S-LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT NC_007732_PHEV_VW572_nsp3_2764.. T-LKFKIVQWQEAWLEFRSGRPARFVALVMAKGGFKFGDPADSRDFLRVVFSQVDLTGAT EF424621_AntelopeCoV_US/OH1/2003 N-LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAI EF424622_GiCoV_US/OH3-TC/2006_ns N-LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAI NC_004718_SARS-human_Tor2_nsp3_2 E-VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK AY304488_SARS-civet_SZ16_nsp3_27 E-VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK NC_009694_SARS-bat_HKU3-1_nsp3_2 E-VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK AY545919_SARS-badger_CFB/SZ/94/0 E-VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK NC_009019_Bat-CoV-HKU4_B04f HDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSA NC_009020_Bat-CoV-HKU5_LMH3f KEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQA NC_009021_Bat-CoV-HKU9_BF_005I D-VSFSTPWVCRAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNH----GTV NC_001451_IBV_Beaudette_nsp3_254 K-IRFKGF-LTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN AY646283_IBV-partridge_Partridge K-IKFKGF-LAEAWAKLLGGDPTDFVAWCYASCNANVGDFSDTNWLSANLAEYFEVDYTN AY641576_IBV-peafowl_Peafowl/GD/ K-IRFKGF-LAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTN : : : . * : NC_002645_HCoV-229E_inf-1_nsp3_2 QLEH--YSSCVECDAKFKNSVASINSAIVCAS----VKRDGVQVGY---CVHGIKYYSRV NC_005831_HCoV-NL63_AmsterdamI_n TLEQ--YSTCDIC----KSTVVEVKSAIVCAS----VLKDGCDVGF---CPHRHKLRSRV NC_002306_TGEV_PUR46-MAD_nsp3_29 IVTH--TTACDKC-----AKVEKFVGPVVAAP----LAIHGTDET----CVHGVSVNVKV NC_003436_PEDV_CV777_nsp3_2982.. TIER---VTHDGC----CCSKRVVTAPVVNAS----VLKLGVEDGL---CPHGLNYIGKV DQ811787_PRCV_ISU-1_nsp3_2941..7 IVTH--TTACDKC-----AKVEKFVGPVVAAP----LAIHGTDET----CVHGVSVNVKV AY994055_FIPV_79-1146_nsp3_2948. TVTH--TTACDKC-----AKVETFTGPVVAAP----LLVCGTDEI----CVHGVHVNVKV NC_009657_BtCoV-G1_BtCoV/512/200 EMLRATSTTCDGT----CSTKRVVSTPVVNAS----VLKVGLDDGN---CVHGLPLVDRV EF203064_Bat-CoV-HKU2_HKU2/GD/43 TVER--STLCDRC----NSTVKTVTGAIAEAS----VILNGHADGH---CPHNFEWRVQV NC_005147_HCoV-OC43_OC43_nsp3_27 CDFE---IACK-C----GVKQEQRTGLDAVMH-FGTLSREDLEIGYTVDCSCGKKLI-HC NC_006577_CoV-HKU1A_N1_nsp3_2633 CELE---LICD-C----GIKQESRVGVDAVMH-FGTLAKTDLFNGYKIGCNCAGRIV-HC AY884001_CoV-HKU1B_N2_nsp3_2627. CELE---LICD-C----GIKQESRVGVDAVMH-FGTLAKTDLFNGYKIGCNCAGRIV-HC DQ339101_CoV-HKU1C_N5_nsp3_2627. CELE---LICD-C----GIKQESRVGVDAVMH-FGTLAKTDLFNGYKIGCNCAGRIV-HC NC_003045_BCoV_BCoV-ENT_nsp3_276 CDFE---IACK-C----GVKQEQRTGVDAVMH-FGTLSREDLEIGYTVDCSCGKKLI-HC NC_001846_MHV_MHV-A59_nsp3_2706. CNLE---FVCK-C----GVKQEQRKGVDAVMH-FGTLDKGDLVRGYNIACTCGSKLV-HC NC_007732_PHEV_VW572_nsp3_2764.. CDFE---IACK-C----GVKQEQRTGLDAVMH-FGTLSREELEVGYTVDCSCGKKLI-HC EF424621_AntelopeCoV_US/OH1/2003 CDFE---IACK-C----GVKQEQRTGVDAVMH-FGTLSREDLEIGYTVDCSCGKKLI-HC EF424622_GiCoV_US/OH3-TC/2006_ns CDFE---IACK-C----GVKQEQRTGVDAVMH-FGTLSREDLEIGYTVDCSCGKKLI-HC NC_004718_SARS-human_Tor2_nsp3_2 RVLN---VVCKHC----GQKTTTLTGVEAVMY-MGTLSYDNLKTGVSIPCVCGRDATQYL AY304488_SARS-civet_SZ16_nsp3_27 RVLN---VVCKHC----GQKTTTLTGVEAVMY-MGTLSYDNLKTGVSIPCVCGRDATQYL NC_009694_SARS-bat_HKU3-1_nsp3_2 RVLN---VVCKHC----GQKTTTLKGVEAVMY-MGTLSYDELKTGVSIPCVCGRNATQYL AY545919_SARS-badger_CFB/SZ/94/0 RVLN---VVCKHC----GQKTTTLTGVEAVMY-MGTLSYDNLKTGVSIPCVCGRDATQYL NC_009019_Bat-CoV-HKU4_B04f KMVW--REWCTVC----GIRDIEYTGMRACVY-AGVNSMEELQSVFNETCVCGSVKHRQL NC_009020_Bat-CoV-HKU5_LMH3f KMVW--RQWCNVC----GVQDTTTTGLKACIY-VGMNSLDELHATHEECCQCGDVRKRQL NC_009021_Bat-CoV-HKU9_BF_005I TARRVMQTVCEHC----GVSQMVFTGTDACTF-YGSVVLDDLYAPVSVVCQCGRPAIRYV NC_001451_IBV_Beaudette_nsp3_254 AFLK-KRVSCN-C----GIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEV AY646283_IBV-partridge_Partridge ALLK-KRVSCN-C----GVKNYEFRGLEACIQPVKAPNLLHFKTQYSNCLTCGSNSVDEV AY641576_IBV-peafowl_Peafowl/GD/ ALLK-KCVSCN-C----GVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEV . NC_002645_HCoV-229E_inf-1_nsp3_2 RSVRGRAIIVSV----EQLEPCAQSRLLSGVAYTAFSGPVDK--GHYTVYDTAKKS--MY NC_005831_HCoV-NL63_AmsterdamI_n KFVNGRVVITNV----GEPIISQPSKLLNGIAYTTFSGSFDN--GHYVVYDAANNA--VY NC_002306_TGEV_PUR46-MAD_nsp3_29 TQIKGTVAITSL----IGPIIGEV---LEATGYICYSGSNRN--GHYTYYDNRNGL--VV NC_003436_PEDV_CV777_nsp3_2982.. VVVKGTTIVVNV----GKPVVAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGM--VH DQ811787_PRCV_ISU-1_nsp3_2941..7 TQIKGTVAITSL----IGPIIGEV---LEATGYICYSGSNRN--GHYTYYDNRNGL--VV AY994055_FIPV_79-1146_nsp3_2948. TSIRGTVAITSL----IGPVVGDV---IDATGYICYTGLNSR--GHYTYYDNRNGL--MV NC_009657_BtCoV-G1_BtCoV/512/200 VSVNGTVIITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTG-VGHYTVFDKEAKL--MF EF203064_Bat-CoV-HKU2_HKU2/GD/43 VGVKGDIILLHSGSLLNGPYVY-------GDAYVAFSGNIDN--GHYTVFDNKLSK--MY NC_005147_HCoV-OC43_OC43_nsp3_27 VRFDVPFLICS-----NTPASVKL--PKGVGSANIFIGDKV---GHYVHVKCEQSY-QLY NC_006577_CoV-HKU1A_N1_nsp3_2633 TKLNVPFLICS-----NTPLSKDL--PDDVVAANMFMGVGV---GHYTHLKCGSPY-QHY AY884001_CoV-HKU1B_N2_nsp3_2627. TKLNVPFLICS-----NTPLSKDL--PDDVVAANMFMGVGV---GHYTHLKCGSPY-QHY DQ339101_CoV-HKU1C_N5_nsp3_2627. TKLNVPFLICS-----NTPLSKDL--PDDVVAANMFMGVGV---GHYTHLKCGSPY-QHY NC_003045_BCoV_BCoV-ENT_nsp3_276 VRFDVPFLICS-----NTPASVKL--PKGVGSANIFKGDKV---GHYVHVKCEQSY-QLY NC_001846_MHV_MHV-A59_nsp3_2706. TQFNVPFLICS-----NTPEGRKL--PDDVVAANIFTGGSV---GHYTHVKCKPKY-QLY NC_007732_PHEV_VW572_nsp3_2764.. VRFDVPFLICS-----NTPSSVKL--PKGVVCANIFIGDKV---GHYVHVKCEQAY-QLY EF424621_AntelopeCoV_US/OH1/2003 VRFDVPFLICS-----NTPASVKL--PKGVGSANIFKGDKV---GHYVHVKCEQSY-QLY EF424622_GiCoV_US/OH3-TC/2006_ns VRFDVPFLICS-----NTPASVKL--PKGVGSANIFKGDKV---GHYVHVKCEQSY-QLY NC_004718_SARS-human_Tor2_nsp3_2 VQQESSFVMMS-----APPAEYKL-QQGTFLCANEYTGNYQC--GHYTHITAKETL-YRI AY304488_SARS-civet_SZ16_nsp3_27 VQQESSFVMMS-----APPAEYKL-QQGTFLCANEYTGNYQC--GHYTHITAKETL-YRI NC_009694_SARS-bat_HKU3-1_nsp3_2 VQQESSFVMMS-----APPAEYKL-QQGAFLCANEYTGNYQC--GHYTHITAKETL-YRV AY545919_SARS-badger_CFB/SZ/94/0 VQQESSFVMMS-----APPAEYKL-QQGTFLCANEYTGNYQC--GHYTHITAKETL-YRI NC_009019_Bat-CoV-HKU4_B04f VEHSAPWLLVSG----LNEVKVSTSTDPIYRAFNVFQGVETS-VGHYVHIRVKDGLFYKY NC_009020_Bat-CoV-HKU5_LMH3f VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETS-VGHYLHVRVKDNLLYKY NC_009021_Bat-CoV-HKU9_BF_005I SEQKSPWLLMS-----CTPTQVPLDTSGIWKTAIVFRGPVTA--GHYM-YAVNGTLISVY NC_001451_IBV_Beaudette_nsp3_254 IEASLPYLLLFAT---DGPATVDC--DEDAVGTVVFVGSTNS--GHC--YTQAAGQ--AF AY646283_IBV-partridge_Partridge IEASLPYLLLLAT---DGPAAVDC--DENAVGNVVFIGSTNS--GHC--YTQAAGK--AF AY641576_IBV-peafowl_Peafowl/GD/ IEASLPYLLLFAT---DGPATVDC--DENAVGTVVFIGSTNS--GHC--YTQADGK--AF : : . ** NC_002645_HCoV-229E_inf-1_nsp3_2 DGDRFVKHDLSLLSVTSVVM---------------------------------------- NC_005831_HCoV-NL63_AmsterdamI_n DGARLFSSDLSTLAVTAIVV----------------VGGCVTSNVP-------------- NC_002306_TGEV_PUR46-MAD_nsp3_29 DAEKAYHFNRDLLQVTTAIA-----------------------------SNFVVKKPQA- NC_003436_PEDV_CV777_nsp3_2982.. DGDAFVPGDLNVSPVTNVVV---------------------------------SEQTAVV DQ811787_PRCV_ISU-1_nsp3_2941..7 DAEKAYHFNRDLLQVTTAIA-----------------------------SNFVVKKPQA- AY994055_FIPV_79-1146_nsp3_2948. DADKAYHFEKNLLQVTTAIA-------------SNFVANTPKKEIMPKTQAKESKAKESN NC_009657_BtCoV-G1_BtCoV/512/200 DGDVLKPCDLNVSPVTSVVV---------------------------------CNNKKIV EF203064_Bat-CoV-HKU2_HKU2/GD/43 DGIKCVKTTLDTLVASSVVI----------------------------------RNGSYA NC_005147_HCoV-OC43_OC43_nsp3_27 DASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYY NC_006577_CoV-HKU1A_N1_nsp3_2633 DACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYY AY884001_CoV-HKU1B_N2_nsp3_2627. DACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYY DQ339101_CoV-HKU1C_N5_nsp3_2627. DACSVKKYTGVSGCLTDCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYY NC_003045_BCoV_BCoV-ENT_nsp3_276 DASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYY NC_001846_MHV_MHV-A59_nsp3_2706. DACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYY NC_007732_PHEV_VW572_nsp3_2764.. DASNVKKVADVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYY EF424621_AntelopeCoV_US/OH1/2003 DASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYY EF424622_GiCoV_US/OH3-TC/2006_ns DASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYY NC_004718_SARS-human_Tor2_nsp3_2 DGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYY AY304488_SARS-civet_SZ16_nsp3_27 DGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYY NC_009694_SARS-bat_HKU3-1_nsp3_2 DGAHLTKMSEYKGPVTDVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYY AY545919_SARS-badger_CFB/SZ/94/0 DGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYY NC_009019_Bat-CoV-HKU4_B04f DSGSLTKTSDMKCKMTSVWY-PTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYY NC_009020_Bat-CoV-HKU5_LMH3f DSGSLSKTSDMKCKMTDVYY-PKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYF NC_009021_Bat-CoV-HKU9_BF_005I DANTRRRTSDLKLPATDILY-GPTSFTSDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYF NC_001451_IBV_Beaudette_nsp3_254 DNLAKDRKFGKKSPYITAMY--------------------TRFAFKNETSLPVAKQSKGK AY646283_IBV-partridge_Partridge DNLAQDRKFGKKSPYITAMY--------------------TRFSLKSKNLMPIAKKSKGK AY641576_IBV-peafowl_Peafowl/GD/ DNLAKDRKFGRKSPYITAMY--------------------TRFSLRSENPLLVVEHSKGK * NC_002645_HCoV-229E_inf-1_nsp3_2 ----------------VGGYVAPVNT---------------------------------- NC_005831_HCoV-NL63_AmsterdamI_n -------------------TIVSEKI---------------------------------- NC_002306_TGEV_PUR46-MAD_nsp3_29 EERPKNCAF--NKVAASPKIVQEQKL---------------------------------- NC_003436_PEDV_CV777_nsp3_2982.. IKDPVKKAE--------------------------------------------------- DQ811787_PRCV_ISU-1_nsp3_2941..7 DERPKNCAF--NKAVASPKIVQEQKL---------------------------------- AY994055_FIPV_79-1146_nsp3_2948. TARVFSEVE-----ENPKNIVRKEKL---------------------------------- NC_009657_BtCoV-G1_BtCoV/512/200 VQDPVKRVE--------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 VK---------------------------------------------------------- NC_005147_HCoV-OC43_OC43_nsp3_27 TQRIIKAQF--KTFEKVDGVYTNFKLIGHT-------VCDSLNAKLGFDSSKEFV-EYKI NC_006577_CoV-HKU1A_N1_nsp3_2633 TKPIIKAQF--KPFAKVDGVYTNFKLVGHD-------ICAQLNDKLGFNVDLPFV-EYKV AY884001_CoV-HKU1B_N2_nsp3_2627. TKPIIKAQF--KPFAKVDGVYTNFKLVGHD-------ICAQLNDKLGFNVDLPFV-EYKV DQ339101_CoV-HKU1C_N5_nsp3_2627. TKPIIKAQF--KPFAKVDGVYTNFKLVGHD-------ICAQLNDKLGFNVDLPFV-EYKV NC_003045_BCoV_BCoV-ENT_nsp3_276 TQRIIKAQF--KTFEKVDGVYTNFKLIGHT-------ICDILNAKLGFDSSKEFV-EYKV NC_001846_MHV_MHV-A59_nsp3_2706. TKPIIKAQF--RTFEKVDGVYTNFKLVGHS-------IAEKLNAKLGFDCNSPFV-EYKI NC_007732_PHEV_VW572_nsp3_2764.. TQRIIKAQF--KTFEKVDGVYTNFKLVGHT-------ICDSLNAKLGFDSSKEFV-EYKV EF424621_AntelopeCoV_US/OH1/2003 TQRIIKAQF--KTFEKVDGVYTNFKLIGHT-------ICDILNAKLGFDSSKEFV-EYKV EF424622_GiCoV_US/OH3-TC/2006_ns TQRIIKAQF--KTFEKVDGVYTNFKLIGHT-------ICDILNAKLGFDSSKEFV-EYKV NC_004718_SARS-human_Tor2_nsp3_2 TEQPIDLV---PTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSV AY304488_SARS-civet_SZ16_nsp3_27 TEQPIDLV---PTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSV NC_009694_SARS-bat_HKU3-1_nsp3_2 TEQPIDLV---PTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTV AY545919_SARS-badger_CFB/SZ/94/0 TEQPIDLV---PTQPLPNASFDNFKL-----TCSNTKFADDLNQMTGF--TKPASRELSV NC_009019_Bat-CoV-HKU4_B04f TSKPTIKYS--PATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTY NC_009020_Bat-CoV-HKU5_LMH3f TKKPVIEYS--PATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTY NC_009021_Bat-CoV-HKU9_BF_005I TTAPIEVVAAPKLVTSYDGFYLSSCQ--------NPQLAESFNKAINATKTGPMK---LL NC_001451_IBV_Beaudette_nsp3_254 SKSVKEDVS--NLATSSKASFDNLTD---------------------------FEQWYDS AY646283_IBV-partridge_Partridge NQVVKEDVS--NLAISSKASFDNLTD---------------------------FEQWYDS AY641576_IBV-peafowl_Peafowl/GD/ AKVVKEDVS--NLATSSKASFDDLTD---------------------------FEQWYDS NC_002645_HCoV-229E_inf-1_nsp3_2 -----VKPKPVINQLDEKAQKF-------------------------------------- NC_005831_HCoV-NL63_AmsterdamI_n ---------SVMDKLDTGAQKF-------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp3_29 -LAIESGANYALTEFGRYADMF-------------------------------------- NC_003436_PEDV_CV777_nsp3_2982.. -----LDATKLLDTMNYASERF-------------------------------------- DQ811787_PRCV_ISU-1_nsp3_2941..7 -LAIESGANYALTEFGKYADMF-------------------------------------- AY994055_FIPV_79-1146_nsp3_2948. -LAIESGVDYTITTLGKYADVF-------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/200 -----LDASKFLDTMNVASEKF-------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 -----TEHVPLIKKLDDSAEKF-------------------------------------- NC_005147_HCoV-OC43_OC43_nsp3_27 TEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEKA----------SLNSLTYFN NC_006577_CoV-HKU1A_N1_nsp3_2633 TVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWFCHDEA----------SLNSLTYFN AY884001_CoV-HKU1B_N2_nsp3_2627. TVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWLCHDEA----------SLNSLTYFN DQ339101_CoV-HKU1C_N5_nsp3_2627. TVWPVATGDVVLASDDLYVKRYFKGCETFGKPVIWFCHDEA----------SLNSLTYFN NC_003045_BCoV_BCoV-ENT_nsp3_276 TEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQA----------SLNSLTYFN NC_001846_MHV_MHV-A59_nsp3_2706. TEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGHEEA----------SLKSLTYFN NC_007732_PHEV_VW572_nsp3_2764.. TEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEKA----------SLNSLTYFN EF424621_AntelopeCoV_US/OH1/2003 TEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQA----------SLNSLTYFN EF424622_GiCoV_US/OH3-TC/2006_ns TEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQA----------SLNSLTYFN NC_004718_SARS-human_Tor2_nsp3_2 TFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCL--WS AY304488_SARS-civet_SZ16_nsp3_27 TFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCL--WS NC_009694_SARS-bat_HKU3-1_nsp3_2 TFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCL--WS AY545919_SARS-badger_CFB/SZ/94/0 TFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCL--WS NC_009019_Bat-CoV-HKU4_B04f SLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL--YD NC_009020_Bat-CoV-HKU5_LMH3f SFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQV--YD NC_009021_Bat-CoV-HKU9_BF_005I TMYPNVAGDVVAISDDNVVA-HPYGSLHMGKPVLFVTRPNT----------WKKLVPLLS NC_001451_IBV_Beaudette_nsp3_254 NIYESLKVQESPDNFDKYVSFTTK------------------------------------ AY646283_IBV-partridge_Partridge NIYESLKVQETPDNLYEYVSFTTK------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ YIYESLKVQETPDNLDEYVSFTTK------------------------------------ NC_002645_HCoV-229E_inf-1_nsp3_2 ------------------------------------------------------------ NC_005831_HCoV-NL63_AmsterdamI_n ------------------------------------------------------------ NC_002306_TGEV_PUR46-MAD_nsp3_29 ------------------------------------------------------------ NC_003436_PEDV_CV777_nsp3_2982.. ------------------------------------------------------------ DQ811787_PRCV_ISU-1_nsp3_2941..7 ------------------------------------------------------------ AY994055_FIPV_79-1146_nsp3_2948. ------------------------------------------------------------ NC_009657_BtCoV-G1_BtCoV/512/200 ------------------------------------------------------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------------------------------------------ NC_005147_HCoV-OC43_OC43_nsp3_27 RPSLVDDNKFDVLKVDD-----------------------------------------VD NC_006577_CoV-HKU1A_N1_nsp3_2633 KPSFKSENRYSVLSVDSVS---------------------------------------EE AY884001_CoV-HKU1B_N2_nsp3_2627. KPSFKSENRYSVLSVDSVS---------------------------------------EE DQ339101_CoV-HKU1C_N5_nsp3_2627. KPSFKSENRYSVLSVDSVS---------------------------------------EE NC_003045_BCoV_BCoV-ENT_nsp3_276 RPLLVDENKFDVLKVDD-----------------------------------------VD NC_001846_MHV_MHV-A59_nsp3_2706. RPSVVCENKFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIAKEQKACASASVED NC_007732_PHEV_VW572_nsp3_2764.. RPSLVDDNKFAVLKVAD-----------------------------------------VD EF424621_AntelopeCoV_US/OH1/2003 RPLLVDENKFDVLKVDD-----------------------------------------VD EF424622_GiCoV_US/OH3-TC/2006_ns RPLLVDENKFDVLKVDD-----------------------------------------VD NC_004718_SARS-human_Tor2_nsp3_2 TKPVDTSNSFEVLAVEDTQGMDNLA---------------------------------CE AY304488_SARS-civet_SZ16_nsp3_27 TKPVDTSNSFEVLAVEDTQGMDNLA---------------------------------CE NC_009694_SARS-bat_HKU3-1_nsp3_2 TKPVDTSNSFEVLVVEDTQGMDNLA---------------------------------CE AY545919_SARS-badger_CFB/SZ/94/0 TKPVDTSNSFEVLAVEDTQGMDNLA---------------------------------CE NC_009019_Bat-CoV-HKU4_B04f VAPIVLDNKYTVLQDNTSQL--------------------------------------VE NC_009020_Bat-CoV-HKU5_LMH3f IAPVTLENKYTVLQDNQIQQVEV-------------------------------EAPKED NC_009021_Bat-CoV-HKU9_BF_005I TVVVNTPNTYDVLAVDPLPVNN------------------------------------ET NC_001451_IBV_Beaudette_nsp3_254 ----------------------------------------------------------ED AY646283_IBV-partridge_Partridge ----------------------------------------------------------ED AY641576_IBV-peafowl_Peafowl/GD/ ----------------------------------------------------------ED NC_002645_HCoV-229E_inf-1_nsp3_2 ----------------------------FDFGDFLIHN---------------------- NC_005831_HCoV-NL63_AmsterdamI_n ----------------------------FQFGDFVMNN---------------------- NC_002306_TGEV_PUR46-MAD_nsp3_29 ----------------------------FMAGDKILRL---------------------- NC_003436_PEDV_CV777_nsp3_2982.. ----------------------------FSFGDFMSRN---------------------- DQ811787_PRCV_ISU-1_nsp3_2941..7 ----------------------------FTAGDKILRL---------------------- AY994055_FIPV_79-1146_nsp3_2948. ----------------------------FMAGDKILRF---------------------- NC_009657_BtCoV-G1_BtCoV/512/200 ----------------------------FTFGDFVSRN---------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ----------------------------FNVGDIVAHN---------------------- NC_005147_HCoV-OC43_OC43_nsp3_27 DGGDSSESGAKETK-EINIIKLSGVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWL NC_006577_CoV-HKU1A_N1_nsp3_2633 SQGNVVTSVMESQI-STKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYL AY884001_CoV-HKU1B_N2_nsp3_2627. SQGNVVTSVMESQI-STKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYL DQ339101_CoV-HKU1C_N5_nsp3_2627. SQGNVVTSVMESQI-STKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDMYL NC_003045_BCoV_BCoV-ENT_nsp3_276 DGGDISESDAKESK-EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL NC_001846_MHV_MHV-A59_nsp3_2706. QVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFL NC_007732_PHEV_VW572_nsp3_2764.. SGDDSSESAVKETK-KINIVQLNGVKKPFKVEDSVVINDDTSETKYVKSLSIVDVYDMWL EF424621_AntelopeCoV_US/OH1/2003 DGGDISESDAKESK-EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL EF424622_GiCoV_US/OH3-TC/2006_ns DGGDISESDAKESK-EINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL NC_004718_SARS-human_Tor2_nsp3_2 SQQPTSEEVVENPT-IQKEVIECDVKTTEVVGNVILKPSDEG-VKVTQELGHEDLMAAYV AY304488_SARS-civet_SZ16_nsp3_27 SQQPTSEEVVENPT-IQKEVIECDVKTTEVVGNVILKPSDEG-VKVTQELGHEDLMAAYV NC_009694_SARS-bat_HKU3-1_nsp3_2 SQTTTSEEVVENPT-VQKEIIECDVKTTEVVGNVILKPSEEG-VKVTQELGHEDLMAAYV AY545919_SARS-badger_CFB/SZ/94/0 SQQPTSEEVVENPT-IQKEVIECDVKTTEVVGNVILKPSDEG-VKVTQELGHEDLMAAYV NC_009019_Bat-CoV-HKU4_B04f HNVPVVDDVPITTR-KLIEVKCKGLNKPFVKGNFSFVNDPNG-VTVVDTLGLTELRALYV NC_009020_Bat-CoV-HKU5_LMH3f AKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQG-VNVIDTLGIDDLRALYV NC_009021_Bat-CoV-HKU9_BF_005I SEEPISVKAP---------IPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYV NC_001451_IBV_Beaudette_nsp3_254 SKLPLTLKVR-----GIKSVVDFRSKDGFIYKLTPDTDENSKAPVYYPVLDAISLKAIWV AY646283_IBV-partridge_Partridge SKLPLTLKVR-----GIKSVVDFKSKDGFTYKLTPDTDENSKAPVYYPVLDSVSLKAIWV AY641576_IBV-peafowl_Peafowl/GD/ SKLPLTLKVR-----GIKSVVDFRSKDGFTYKLTPDTDENSKTPVYYPVLDSISLRAIWV NC_002645_HCoV-229E_inf-1_nsp3_2 ------------------------------------------------------------ NC_005831_HCoV-NL63_AmsterdamI_n ------------------------------------------------------------ NC_002306_TGEV_PUR46-MAD_nsp3_29 ------------------------------------------------------------ NC_003436_PEDV_CV777_nsp3_2982.. ------------------------------------------------------------ DQ811787_PRCV_ISU-1_nsp3_2941..7 ------------------------------------------------------------ AY994055_FIPV_79-1146_nsp3_2948. ------------------------------------------------------------ NC_009657_BtCoV-G1_BtCoV/512/200 ------------------------------------------------------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------------------------------------------ NC_005147_HCoV-OC43_OC43_nsp3_27 T-GCKYVVRTANALSRAVNVPT--------------IRKFIKFGMT---------LVSIP NC_006577_CoV-HKU1A_N1_nsp3_2633 T-GCDYVVWVANELSRLVKSPT--------------VREYIRYGIK---------PITIP AY884001_CoV-HKU1B_N2_nsp3_2627. T-GCDYVVWVANELSRLVKSPT--------------VREYIRYGIK---------PITIP DQ339101_CoV-HKU1C_N5_nsp3_2627. T-GCDYVVWVANELSRLVKSPT--------------VREYIRYGIK---------PITIP NC_003045_BCoV_BCoV-ENT_nsp3_276 T-GCRYVVRTANALSMAVNVPT--------------IRKFIKFGMT---------LVSIP NC_001846_MHV_MHV-A59_nsp3_2706. T-GCKYVVWTANELSRLVNSPT--------------VREYVKWGKG---------KIVTP NC_007732_PHEV_VW572_nsp3_2764.. T-GCKYVVKTANALSRAVNVPT--------------IRKYIKFGMT---------LVSIP EF424621_AntelopeCoV_US/OH1/2003 T-GCRYVVRTANALSMAVNVPT--------------IRKFIKFGMT---------LVSIP EF424622_GiCoV_US/OH3-TC/2006_ns T-GCRYVVRTANALSMAVNVPT--------------IRKFIKFGMT---------LVSIP NC_004718_SARS-human_Tor2_nsp3_2 E-NTSITIKKPNELSLALGLKT-----------------IATHGIAAINSVPWSKILAYV AY304488_SARS-civet_SZ16_nsp3_27 E-NTSITIKKPNELSLALGLKT-----------------IATHGIAAINSVPWSKIFAYV NC_009694_SARS-bat_HKU3-1_nsp3_2 E-ETSITIKKPNELSLALGLKT-----------------LATHGAAAINSVPWSKILAYV AY545919_SARS-badger_CFB/SZ/94/0 E-NTSITIKKPNELSLALGLKT-----------------IATHGIAAINSVPWSKILAYV NC_009019_Bat-CoV-HKU4_B04f DINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVT NC_009020_Bat-CoV-HKU5_LMH3f DRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFASVTVN NC_009021_Bat-CoV-HKU9_BF_005I EGVQPFVLLKASHLSKVLGLRVSDSSLH--------VNHLSKGVVYAYAATRLTTRVTTS NC_001451_IBV_Beaudette_nsp3_254 EGNANFVVGHPNYYSKSLHIPT--------------FWENAENFVKMGDKIGGVTMGLWR AY646283_IBV-partridge_Partridge DGSANFVVGHPNYNSRALRIPT--------------FWEYAESFVKMGVKVNGVTMGLWR AY641576_IBV-peafowl_Peafowl/GD/ EGSANFVVGHPNYHSKSLRIPT--------------FWENAESFVKMGYKIDGVTMGLWR NC_002645_HCoV-229E_inf-1_nsp3_2 -------------------------FVIFFTWLLSMFTLCKTAVTTGDV-----KIMAKA NC_005831_HCoV-NL63_AmsterdamI_n -------------------------IVLFLTWLLSMFSLLRTSIMKHDI-----KVIAKA NC_002306_TGEV_PUR46-MAD_nsp3_29 -------------------------LLEVFKYLLVLF-MCLRSTKMPKV-----KVKPP- NC_003436_PEDV_CV777_nsp3_2982.. -------------------------LITVFLYILSILGLCFRAFRKRDV-----KVLAGV DQ811787_PRCV_ISU-1_nsp3_2941..7 -------------------------LFAVFKYLLVLG-MCLRSTRMPKV-----KVKPP- AY994055_FIPV_79-1146_nsp3_2948. -------------------------LLEVFKYLLVVF-MCLRKSKMPKV-----KVKPP- NC_009657_BtCoV-G1_BtCoV/512/200 -------------------------IIVLIVYLFSLLAICFRALKKRDM-----KVMAGV EF203064_Bat-CoV-HKU2_HKU2/GD/43 -------------------------IAYFFVWLLTTLSTLYRCWRGGNF-----KLLSSI NC_005147_HCoV-OC43_OC43_nsp3_27 IDLLNLREIKPAVNVVKAVRNKISVCFNFIKWLFVLLFGWIKISADNKV----------- NC_006577_CoV-HKU1A_N1_nsp3_2633 IDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTI----------- AY884001_CoV-HKU1B_N2_nsp3_2627. IDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTI----------- DQ339101_CoV-HKU1C_N5_nsp3_2627. IDLLCLRDDNQTLLVPKIFKARAIEFYGFLKWLFIYVFSLLHFTNDKTI----------- NC_003045_BCoV_BCoV-ENT_nsp3_276 IDLLNLREIKPVFNVVKAVRNKISACFNFIKWLFVLLFGWIKISADNKV----------- NC_001846_MHV_MHV-A59_nsp3_2706. AKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKV----------- NC_007732_PHEV_VW572_nsp3_2764.. IDLLNLRDIKPVVNVVRAVRNKVSACFNFIKWLFVLLFGWIKISADNKV----------- EF424621_AntelopeCoV_US/OH1/2003 IDLLNLREIKPVFNVVKAMRNKISACFNFIKWLFVLLFGWIKISADNKV----------- EF424622_GiCoV_US/OH3-TC/2006_ns IDLLNLREIKPVFNVVKAMRNKISACFNFIKWLFVLLFGWIKISADNKV----------- NC_004718_SARS-human_Tor2_nsp3_2 KPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNS--------RIRASL AY304488_SARS-civet_SZ16_nsp3_27 KPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNS--------RIRASL NC_009694_SARS-bat_HKU3-1_nsp3_2 KPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNS--------RIKASL AY545919_SARS-badger_CFB/SZ/94/0 KPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNS--------RIRASL NC_009019_Bat-CoV-HKU4_B04f ATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTV-----DIGVSG NC_009020_Bat-CoV-HKU5_LMH3f VTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTV-----KVEVGA NC_009021_Bat-CoV-HKU9_BF_005I LLGGLVTRSVRKTADFVRSTNPGSKCVGLLCLFYQLFMRFWLLVKKP-----------PI NC_001451_IBV_Beaudette_nsp3_254 AEHLNKPNLERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGGGVVRNITDSIKGL AY646283_IBV-partridge_Partridge AEHLNKPNLENLFNIVKKMIVGTNIITTQCGRLIGKTASFIADKVGDGVVLNVTDRIKGC AY641576_IBV-peafowl_Peafowl/GD/ AEHLNKPNLERIFNIAKKAIVGSSVVTTQCGKILVKAATYVADKVGDGVVRNITDRIKGL : NC_002645_HCoV-229E_inf-1_nsp3_2 PQRTGVVLKRSLK------YNLKASAAVLKSKWWLLAKFTKLL-----LLIYTLY-SVVL NC_005831_HCoV-NL63_AmsterdamI_n PKRTGVILTRSFK------YNIRSALFVIKQKWCVIVTLFKFL-----LLLYAIY-ALVF NC_002306_TGEV_PUR46-MAD_nsp3_29 ------LAFKDFG------AKVRTLNYMRQLNKPSVWRYAKLV-----LLLIAIY-NFFY NC_003436_PEDV_CV777_nsp3_2982.. PQRTGIILRKSMR------YNAKALGVFFKLKLYWFKVLGKFS-----LGIYALY-ALLF DQ811787_PRCV_ISU-1_nsp3_2941..7 ------FSFKDFG------AKVRTLNYMRQLNKPSVWRYAKLV-----LLLIAIY-NFFY AY994055_FIPV_79-1146_nsp3_2948. ------HVFRNLG------AKVRTLNYVRQLNKPALWRYIKLV-----LLLIALY-HFFY NC_009657_BtCoV-G1_BtCoV/512/200 PERTGIILKRSVK------YNYKALKFFFRLKFQYIKVFLKFS-----LVLYTLY-ALMF EF203064_Bat-CoV-HKU2_HKU2/GD/43 PERSGIVLRRSFK------YNFRALRSNVASKQKYCLMFAKLL-----LLLYTIY-AMLF NC_005147_HCoV-OC43_OC43_nsp3_27 -----IYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACII-----ATIFLLWFNFIY NC_006577_CoV-HKU1A_N1_nsp3_2633 -----FYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVV-----ATVFLFWFNFLY AY884001_CoV-HKU1B_N2_nsp3_2627. -----FYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVV-----ATVFLFWFNFLY DQ339101_CoV-HKU1C_N5_nsp3_2627. -----FYTTEIASKFTFNLFCLALKNAFQTFRWSIFIKGFLVV-----ATVFLFWFNFLY NC_003045_BCoV_BCoV-ENT_nsp3_276 -----IYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACII-----ATIFLLWFNFIY NC_001846_MHV_MHV-A59_nsp3_2706. -----IYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLV-----ATVFLLWFNFLY NC_007732_PHEV_VW572_nsp3_2764.. -----IYTTEIASKLTCKLVALAVKNALLTFNWSMVARGACII-----ATIFLLWFNFIY EF424621_AntelopeCoV_US/OH1/2003 -----IYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACII-----ATIFLLWFNFIY EF424622_GiCoV_US/OH3-TC/2006_ns -----IYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACII-----ATIFLLWFNFIY NC_004718_SARS-human_Tor2_nsp3_2 PTTIAKNSVKSVA----KLCLDAGINYVKSPKFSK-------------LFTIAMWLLLLS AY304488_SARS-civet_SZ16_nsp3_27 PTTIAKNSVKSVA----KLCLDAGINYVKSPKFSK-------------LFTIAMWLLLLS NC_009694_SARS-bat_HKU3-1_nsp3_2 PTTIAKNSVKSVA----KLCLDVCINYVKSPKFSK-------------LFTIVMWLLLLS AY545919_SARS-badger_CFB/SZ/94/0 PTTIAKNSVKSVA----KLCLDAGINYVKSPKFSK-------------LFTIAMWLLLLS NC_009019_Bat-CoV-HKU4_B04f LRTAGIVTTNIVKQCG-TAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYH-LVLF NC_009020_Bat-CoV-HKU5_LMH3f LRTAGIVTTNVVKQCA-SAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYY-LFLF NC_009021_Bat-CoV-HKU9_BF_005I VKVSGIIAYNTGCGVT-TCVLNYLRSRCGNISWSRLLK----------LLRYMLYIWFVW NC_001451_IBV_Beaudette_nsp3_254 CGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVLATLLIVWFVYTS AY646283_IBV-partridge_Partridge FGFTREHFERRVSLQFFKTLFFFFFCLLKASVKSLLSSYKSVLRKVVFTALLILWFVYTS AY641576_IBV-peafowl_Peafowl/GD/ CGFTRGHFEKKMSLQFLKTLVFFFFYFLKASAKSLVSSYKIVLCKVVFATLLIVWFIYTS NC_002645_HCoV-229E_inf-1_nsp3_2 LCVRFGPFN--------------------------FCSETVNGYAKSN-FVKDDYCDG-S NC_005831_HCoV-NL63_AmsterdamI_n MIVQFSPFNSL------------------------LCGDIVSGYEKST-FNKDIYCGN-S NC_002306_TGEV_PUR46-MAD_nsp3_29 LFVSIPVVHKL------------------------TCNGAVQAYKNSS-FIKSAVCGN-S NC_003436_PEDV_CV777_nsp3_2982.. MTIRFTPIGSP------------------------VCDDVVAGYANSS-FDKNEYC-N-S DQ811787_PRCV_ISU-1_nsp3_2941..7 LFVSIPVVHKL------------------------TCNGAVQAYKNSS-FIKSAVCGN-S AY994055_FIPV_79-1146_nsp3_2948. LFVSIPVVHKL------------------------ACSGSVQAYSNSS-FVKSEVCGN-S NC_009657_BtCoV-G1_BtCoV/512/200 MFIRFTPVGTP------------------------ICKRYTDGYANST-FDKNDYC-G-N EF203064_Bat-CoV-HKU2_HKU2/GD/43 ILVRFSFFNDY------------------------ICGSAVRGYASSD-FDKSKFCNG-S NC_005147_HCoV-OC43_OC43_nsp3_27 ANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSMQDVGFK----NQYCNG-S NC_006577_CoV-HKU1A_N1_nsp3_2633 INVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFT----SHFCNG-S AY884001_CoV-HKU1B_N2_nsp3_2627. INVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFT----SHFCNG-S DQ339101_CoV-HKU1C_N5_nsp3_2627. INVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTICDFYSKLGVGFT----SHFCNG-S NC_003045_BCoV_BCoV-ENT_nsp3_276 ANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFK----NQYCNG-S NC_001846_MHV_MHV-A59_nsp3_2706. ANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYR----SSFCNG-S NC_007732_PHEV_VW572_nsp3_2764.. ANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDFYSVQDVGFK----NQYCNG-S EF424621_AntelopeCoV_US/OH1/2003 ANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFK----NQYCNG-S EF424622_GiCoV_US/OH3-TC/2006_ns ANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGFK----NQYCNG-S NC_004718_SARS-human_Tor2_nsp3_2 ICLG-SLICVTA----AFGVLL------SNFGAPSYCNGVRELYLNSSNVTTMDFCEG-S AY304488_SARS-civet_SZ16_nsp3_27 ICLG-SLIYVTA----AFGVLL------SNFGAPSYCNGVRELYLNSSNVTTMDFCEG-S NC_009694_SARS-bat_HKU3-1_nsp3_2 ICLG-SLTYVTA----VLGVCL------SSLGVPSYCDGVRELYINSSNVTTMDFCQG-Y AY545919_SARS-badger_CFB/SZ/94/0 ICLG-SLICVTA----AFGVLL------SNFGAPSYCNGVRELYLNSSNVTTMDFCEG-S NC_009019_Bat-CoV-HKU4_B04f NQVLSSDVMLED----ATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEFCSNRS NC_009020_Bat-CoV-HKU5_LMH3f HQVLTSDVMLDG----AEGMLATYRELRSYLGIHSLCDGMVEAYRNVS-YDVNDFCSNRS NC_009021_Bat-CoV-HKU9_BF_005I TCLTICGVWLSE----PYAPSLVTR-FKYFLGIVMPCDYVLVNETGTG------------ NC_001451_IBV_Beaudette_nsp3_254 NPVMFTGIRVLD-----------------FLFEGSLCGPYKD-YGKDS-FDVLRYCAD-D AY646283_IBV-partridge_Partridge NPVIFTGIRVLD-----------------FLLEGSFCSPYAD-YGKES-FDILRYCGS-D AY641576_IBV-peafowl_Peafowl/GD/ NPVVFTGIRVLD-----------------FLFEGSLCGPYND-YGKDS-FDVLRYCAG-D : * NC_002645_HCoV-229E_inf-1_nsp3_2 LGCKMCLFGYQELSQFSHLDVVWKHITDP------LFSNMQPFIVMVLLLIFGDNYLRCF NC_005831_HCoV-NL63_AmsterdamI_n MVCKMCLFSYQEFNDLDHTSLVWKHIRDP------ILISLQPFVILVILLIFGNMYLRFG NC_002306_TGEV_PUR46-MAD_nsp3_29 ILCKACLASYDELADFQHLQVTWDFKSDP------LWNRLVQLSYFAFLAVFGNNYVRCF NC_003436_PEDV_CV777_nsp3_2982.. VICKVCLYGYQELSDFSHTQVVWQHLRDP------LIGNVMPFFYLAFLAIFGGVYVKAI DQ811787_PRCV_ISU-1_nsp3_2941..7 ILCKACLASYDELADFQHLQVAWDFKSDP------LWNRLVQLSYFAFLAVFGNNYVRCF AY994055_FIPV_79-1146_nsp3_2948. ILCKACLASYDELADFDHLQVSWDYKSDP------LWNRVIQLSYFIFLAVFGNNYVRCL NC_009657_BtCoV-G1_BtCoV/512/200 VLCKICLYGYEELSDFTHTRVIWQHLKDP------LIGNILPLFYLVFLIIFGGFFVRIG EF203064_Bat-CoV-HKU2_HKU2/GD/43 LVCKTCLFGYQELSEFQHVGVVWSYVREP------LFASVLPLCYFAVIAIFGGVVERFA NC_005147_HCoV-OC43_OC43_nsp3_27 IACQFCLAGFDMLDNYKAIDVV-QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLF NC_006577_CoV-HKU1A_N1_nsp3_2633 FICELCHSGFDMLDTYAAIDFV-QYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLF AY884001_CoV-HKU1B_N2_nsp3_2627. FICELCYSGFDMLDTYAAIDFV-QYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLF DQ339101_CoV-HKU1C_N5_nsp3_2627. FICELCHSGFDMLDTYAAIDFV-QYEVDRRVLFDYVSLVKLIVELVIGYSLYTVWFYPLF NC_003045_BCoV_BCoV-ENT_nsp3_276 IACQFCLAGFDMLDNYKAIDVV-QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLF NC_001846_MHV_MHV-A59_nsp3_2706. MVCELCFSGFDMLDNYDAINVV-QHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLF NC_007732_PHEV_VW572_nsp3_2764.. IACQFCLSGFDMLDNYKAIDVV-QYEADRRVVVDYTGVLKIVIELIVSYALYTAWFYPLF EF424621_AntelopeCoV_US/OH1/2003 IACQFCLAGFDMLDNYKAIDVV-QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLF EF424622_GiCoV_US/OH3-TC/2006_ns IACQFCLAGFDMLDNYKAIDVV-QYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPLF NC_004718_SARS-human_Tor2_nsp3_2 FPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILG---LAAEWVLAYMLFTKFFYLLG AY304488_SARS-civet_SZ16_nsp3_27 FPCSICSSGLDSLDSYPALETIQVTISSYKLDLTILG---LAAEWVLAYMLFTKFFYLLG NC_009694_SARS-bat_HKU3-1_nsp3_2 FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLG---LAAEWLLAYMLFTKFFYLLG AY545919_SARS-badger_CFB/SZ/94/0 FPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILG---LAAEWVLAYMLFTKFFYLLG NC_009019_Bat-CoV-HKU4_B04f VLCQWCLIGQDSLTRYSALQMLQTHITSY--VLNIDWIW-FALEFFLAYVLYTSSFNVLL NC_009020_Bat-CoV-HKU5_LMH3f ALCNWCLIGQDSLTRYSAFQMIQTHVTSY--VINIDWVW-FVMEFALAYVLYTSTFNVLL NC_009021_Bat-CoV-HKU9_BF_005I WLHHLCMAGMDSLD-YPALRMQQHRYGSP---YNYTYIL-MLLEAFFAYLLYTPALPIVG NC_001451_IBV_Beaudette_nsp3_254 FICRVCLHDKDSLHLYKHAYSVEQVYKDAASGFIFNWNWLYLVFLILFVKPVAGFVIICY AY646283_IBV-partridge_Partridge FTCRVCLHGKDSLHLYKHAYSVKQFYKDAVNGISFTWNWLYMLFLILFVKPVAGFVIICY AY641576_IBV-peafowl_Peafowl/GD/ FTCRVCLHDRDSLHLFKHAYSVEQIYKDAASGINFNWNWLYLVFLILFVKPVAGFVIICY * . : : . NC_002645_HCoV-229E_inf-1_nsp3_2 LLYFVAQMISTVGVFLGYKETNWFLHF-------IPFDVICDELLVTVIVIKVISFVRHV NC_005831_HCoV-NL63_AmsterdamI_n LLYFVAQFISTFGSFLGFHQKQWFLHF-------VPFDVLCNEFLATFIVCKIVLFVRHI NC_002306_TGEV_PUR46-MAD_nsp3_29 LMYFVSQYLNLWLSYFGYVEYSWFLHV-------VNFESISAEFVIVVIVVKAVLALKHI NC_003436_PEDV_CV777_nsp3_2982.. TLYFIFQYLNSLGVFLGLQQSIWFLQL-------VPFDVFGDEIVVFFIVTRVLMFIKHV DQ811787_PRCV_ISU-1_nsp3_2941..7 LMYFVSQYLNLWLSYFGYVEYSWFLHV-------VNFESISAEFVIIVIVVKAVLALKHI AY994055_FIPV_79-1146_nsp3_2948. LMYFVSQYLNLWLSYFGYVKYSWFLHV-------VNFESISVEFVIIVVVFKAVLALKHI NC_009657_BtCoV-G1_BtCoV/512/200 ITYFIMQYINAAGVALGYQDNVWLLHL-------LPFNSMGNIIVVAFIVTRILLFLKHV EF203064_Bat-CoV-HKU2_HKU2/GD/43 LCYFAAQFINNVLSFLKLQDSFWLVQL-------VPFDIFGDEILVMFLSYKAICFFKHV NC_005147_HCoV-OC43_OC43_nsp3_27 ALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFRHV NC_006577_CoV-HKU1A_N1_nsp3_2633 CLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHI AY884001_CoV-HKU1B_N2_nsp3_2627. CLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHI DQ339101_CoV-HKU1C_N5_nsp3_2627. CLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAFVLLRFYIVVTAMYKVVGFIRHI NC_003045_BCoV_BCoV-ENT_nsp3_276 ALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRHV NC_001846_MHV_MHV-A59_nsp3_2706. VLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHV NC_007732_PHEV_VW572_nsp3_2764.. ALISLQILTTWLPELFMLSTLHWSFRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHV EF424621_AntelopeCoV_US/OH1/2003 ALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHV EF424622_GiCoV_US/OH3-TC/2006_ns ALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRHV NC_004718_SARS-human_Tor2_nsp3_2 LSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI AY304488_SARS-civet_SZ16_nsp3_27 LSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI NC_009694_SARS-bat_HKU3-1_nsp3_2 LSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHI AY545919_SARS-badger_CFB/SZ/94/0 LSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI NC_009019_Bat-CoV-HKU4_B04f LVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHV NC_009020_Bat-CoV-HKU5_LMH3f LVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHV NC_009021_Bat-CoV-HKU9_BF_005I ILAVLHLIVLYLPIPLGNS---WLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHV NC_001451_IBV_Beaudette_nsp3_254 CVKYLVLNSTVLQTGVCFLD--WFVQTVF-----SHFNFMGAGF-YFWLFYKIYIQVHHI AY646283_IBV-partridge_Partridge CIRYLVLSTTVLQTGVGFLD--WFVQTVF-----ANFNFMGAGF-YFWLFYKIYIQVHHI AY641576_IBV-peafowl_Peafowl/GD/ CVKYLVLSSTVLQTGVGFLD--WFVKTVF-----THFNFMGAGF-YFWLFYKIYVQVHHI . : : *: NC_002645_HCoV-229E_inf-1_nsp3_2 LFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGY NC_005831_HCoV-NL63_AmsterdamI_n IVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGP NC_002306_TGEV_PUR46-MAD_nsp3_29 VFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSYGF NC_003436_PEDV_CV777_nsp3_2982.. CLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGP DQ811787_PRCV_ISU-1_nsp3_2941..7 VFSCSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCESYGF AY994055_FIPV_79-1146_nsp3_2948. FLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHNFYCKNCDSYGF NC_009657_BtCoV-G1_BtCoV/512/200 LFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGY EF203064_Bat-CoV-HKU2_HKU2/GD/43 VFGCDKPSCVACCKSAKLKRIAMDTIVNGSRRSFYVNANGGAKLCKKHNFFCVACDSYGS NC_005147_HCoV-OC43_OC43_nsp3_27 AYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKP NC_006577_CoV-HKU1A_N1_nsp3_2633 VYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKP AY884001_CoV-HKU1B_N2_nsp3_2627. VYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKP DQ339101_CoV-HKU1C_N5_nsp3_2627. VYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTGFCVKHQWNCFNCHSFKP NC_003045_BCoV_BCoV-ENT_nsp3_276 AYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKP NC_001846_MHV_MHV-A59_nsp3_2706. MYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKP NC_007732_PHEV_VW572_nsp3_2764.. AYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKP EF424621_AntelopeCoV_US/OH1/2003 AYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKP EF424622_GiCoV_US/OH3-TC/2006_ns AYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYKP NC_004718_SARS-human_Tor2_nsp3_2 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT AY304488_SARS-civet_SZ16_nsp3_27 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT NC_009694_SARS-bat_HKU3-1_nsp3_2 MDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCA AY545919_SARS-badger_CFB/SZ/94/0 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT NC_009019_Bat-CoV-HKU4_B04f INGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGV NC_009020_Bat-CoV-HKU5_LMH3f INGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGI NC_009021_Bat-CoV-HKU9_BF_005I RYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTV NC_001451_IBV_Beaudette_nsp3_254 LY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGH AY646283_IBV-partridge_Partridge MY-CKDITCEVCKKVARSNRHEVSVVVNGRKQLVHVYTNSGYTFCKKHNWYCKNCDKYGH AY641576_IBV-peafowl_Peafowl/GD/ LY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGH * . * * . * .:. * . : :*. * *.: * * NC_002645_HCoV-229E_inf-1_nsp3_2 GSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLY------SCETFWRYNF NC_005831_HCoV-NL63_AmsterdamI_n GNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLY------SGDTFWRYDF NC_002306_TGEV_PUR46-MAD_nsp3_29 ENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY------VGDEFTSYDY NC_003436_PEDV_CV777_nsp3_2982.. GCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLY------SGDTFWKYNF DQ811787_PRCV_ISU-1_nsp3_2941..7 ENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY------VGDEFTSYDY AY994055_FIPV_79-1146_nsp3_2948. DHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFY------VGEEFTAYDY NC_009657_BtCoV-G1_BtCoV/512/200 GCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLY------SGSTFWKYNF EF203064_Bat-CoV-HKU2_HKU2/GD/43 GHTYINDHIANELHNVTKLHVKPTGPAFINVDRVEFSDGFYRIF------SGDKFWKYNF NC_005147_HCoV-OC43_OC43_nsp3_27 GNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFY-----DRDGQRTYD- NC_006577_CoV-HKU1A_N1_nsp3_2633 GNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFY-----DRDGQRVYD- AY884001_CoV-HKU1B_N2_nsp3_2627. GNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFY-----DRDGQRVYD- DQ339101_CoV-HKU1C_N5_nsp3_2627. GNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLFY-----DRDGQRVYD- NC_003045_BCoV_BCoV-ENT_nsp3_276 GNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY-----ERDGQRTYD- NC_001846_MHV_MHV-A59_nsp3_2706. GNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFY-----ERDGQRVYD- NC_007732_PHEV_VW572_nsp3_2764.. GNTFITVEAAFDLSRELKRPIQPTDVAYHTVTDVKQVGCSMRLFY-----DRDGQRTYD- EF424621_AntelopeCoV_US/OH1/2003 GNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY-----ERDGQRTYD- EF424622_GiCoV_US/OH3-TC/2006_ns GNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFY-----ERDGQRTYD- NC_004718_SARS-human_Tor2_nsp3_2 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYF-----DKAGQKTYE- AY304488_SARS-civet_SZ16_nsp3_27 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYF-----DKAGQKTYE- NC_009694_SARS-bat_HKU3-1_nsp3_2 GSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYF-----DKAGQKTYE- AY545919_SARS-badger_CFB/SZ/94/0 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYF-----DKAGQKTYE- NC_009019_Bat-CoV-HKU4_B04f GNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHY-----NRDGSSCYE- NC_009020_Bat-CoV-HKU5_LMH3f GNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHY-----SREGASCYE- NC_009021_Bat-CoV-HKU9_BF_005I DSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYF-----ESDGQRSYE- NC_001451_IBV_Beaudette_nsp3_254 QNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVK AY646283_IBV-partridge_Partridge QNTFMSPEVAGELSEKLKRHVKPTAHAYHVVDDACLVDDFVNLKYNAATPGKEGVHSAVK AY641576_IBV-peafowl_Peafowl/GD/ QNTFMSPEVAGGLSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVK *:: : . : * : : . NC_002645_HCoV-229E_inf-1_nsp3_2 DITESKYSCKEVFK--------NCNVLDDFIVFN-NNGTNVTQVKNASVYFSQLLCRPIK NC_005831_HCoV-NL63_AmsterdamI_n DITESKYSCKEVLK--------NCNVLENFIVYN-NSGSNITQIKNACVYFSQLLCEPIK NC_002306_TGEV_PUR46-MAD_nsp3_29 DVKHKKYSSQEVLK--------SMLLLDDFIVYS-PSGSALANVRNACVYFSQLIGKPIK NC_003436_PEDV_CV777_nsp3_2982.. DITDSKYTCKEALK--------NCSIITDFIVFN-NNGSNVNQVKNACVYFSQMLCKPVK DQ811787_PRCV_ISU-1_nsp3_2941..7 DVKHKKYSSQEVLK--------NMLLLDDFIVYS-PSGSALANVRNACVYFSQLIGKPIK AY994055_FIPV_79-1146_nsp3_2948. DVKHKKYSSQEVLK--------TMFLLDDFIVYN-PSGSSLASVRNVCVYFSQLIGRPIK NC_009657_BtCoV-G1_BtCoV/512/200 DITEAKYACKDVLK--------NCNILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIK EF203064_Bat-CoV-HKU2_HKU2/GD/43 DITDKKFSCKEVLK--------NCNILDDFIVFD-NNGSNLSQVQNACVYLSQLLCKPIK NC_005147_HCoV-OC43_OC43_nsp3_27 DVNASLFVDYSNLL----HSKVKSVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPIL NC_006577_CoV-HKU1A_N1_nsp3_2633 DVDASLFVDINNLL----HSKVKVVPNLYVVVVE--SDADRANFLNAVVFYAQSLYRPIL AY884001_CoV-HKU1B_N2_nsp3_2627. DVDASLFVDINNLL----HSKVKVVPNLYVVVVE--SDADRANFLNAVVFYAQSLYRPIL DQ339101_CoV-HKU1C_N5_nsp3_2627. DVDASLFVDINNLL----HSKVKVVPNLYVVVVE--SDADRANFLNAVVFYAQSLYRPIL NC_003045_BCoV_BCoV-ENT_nsp3_276 DVNASLFVDYSNLL----HSKVKGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPIL NC_001846_MHV_MHV-A59_nsp3_2706. DVNASLFVDMNGLL----HSKVKGVPETHVVVVE--NEADKAGFLGAAVFYAQSLYRPML NC_007732_PHEV_VW572_nsp3_2764.. DVNASLFVDYSNLL----HSKVKSVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPIL EF424621_AntelopeCoV_US/OH1/2003 DVNASLFVDYSNLL----HSKVKGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPIL EF424622_GiCoV_US/OH3-TC/2006_ns DVNASLFVDYSNLL----HSKVKGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPIL NC_004718_SARS-human_Tor2_nsp3_2 RHPLSHFVNLDNLR----ANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPIL AY304488_SARS-civet_SZ16_nsp3_27 RHPLSHFVNLDNLR----ANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPIL NC_009694_SARS-bat_HKU3-1_nsp3_2 RHPLSHFVNLDNLR----ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPIL AY545919_SARS-badger_CFB/SZ/94/0 RHPLSHFVNLDNLR----ANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPIL NC_009019_Bat-CoV-HKU4_B04f RYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPML NC_009020_Bat-CoV-HKU5_LMH3f RYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPML NC_009021_Bat-CoV-HKU9_BF_005I RFPMDAFTNVSKLHY---SELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPIL NC_001451_IBV_Beaudette_nsp3_254 CFSVTDFLKKAVFLKE--ALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPIL AY646283_IBV-partridge_Partridge CFSVSDFLKKAVFLKD--AQKCEQIANDSFIVCNTHSAHALEEAKNAAIYYAQCLCKPIL AY641576_IBV-peafowl_Peafowl/GD/ CFSVTDFLKKAVFLKE--ALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPIL : : .:: . . . :: :* *: NC_002645_HCoV-229E_inf-1_nsp3_2 LVDSELLSTL--SVDFNGVLHKAYIDVLRNSFGKDLNANMSL------------------ NC_005831_HCoV-NL63_AmsterdamI_n LVNSELLSTL--SVDFNGVLHKAYVDVLCNSFFKELTANMSM------------------ NC_002306_TGEV_PUR46-MAD_nsp3_29 IVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL------------------ NC_003436_PEDV_CV777_nsp3_2982.. LVDSALLASL--SVDFGASLHSAFVSVLSNSFGKDLSSCNDM------------------ DQ811787_PRCV_ISU-1_nsp3_2941..7 IVNSDLFEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL------------------ AY994055_FIPV_79-1146_nsp3_2948. IVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL------------------ NC_009657_BtCoV-G1_BtCoV/512/200 LVDSALLASL--NVDFSANLHKAFVEVLSNSFGKDLSNCSNM------------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 IIDSTLLSSL--NVDFNGALHKAFLDVLHNSFGKDFSSCKTM------------------ NC_005147_HCoV-OC43_OC43_nsp3_27 MVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVL NC_006577_CoV-HKU1A_N1_nsp3_2633 LVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVL AY884001_CoV-HKU1B_N2_nsp3_2627. LVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVL DQ339101_CoV-HKU1C_N5_nsp3_2627. LVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVNIAHASLREGVQLEKVL NC_003045_BCoV_BCoV-ENT_nsp3_276 MVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVL NC_001846_MHV_MHV-A59_nsp3_2706. MVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVM NC_007732_PHEV_VW572_nsp3_2764.. MVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIVTAHSSIKQGTQIDKVL EF424621_AntelopeCoV_US/OH1/2003 MVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVL EF424622_GiCoV_US/OH3-TC/2006_ns MVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVL NC_004718_SARS-human_Tor2_nsp3_2 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL AY304488_SARS-civet_SZ16_nsp3_27 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL NC_009694_SARS-bat_HKU3-1_nsp3_2 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL AY545919_SARS-badger_CFB/SZ/94/0 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL NC_009019_Bat-CoV-HKU4_B04f LVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVL NC_009020_Bat-CoV-HKU5_LMH3f LVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVI NC_009021_Bat-CoV-HKU9_BF_005I LVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVL NC_001451_IBV_Beaudette_nsp3_254 ILDQALYEQL-VVEPVSKSVIDKVCSILSSIISVDTAALNYK------------------ AY646283_IBV-partridge_Partridge ILDQALYDQL-IVEPVSKSVVDKVCNILSNIISVDSAALNYK------------------ AY641576_IBV-peafowl_Peafowl/GD/ ILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVDTAALNYK------------------ ::: : . : . . NC_002645_HCoV-229E_inf-1_nsp3_2 ---AECKR----ALGL-SISDHEFTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEK-LSA NC_005831_HCoV-NL63_AmsterdamI_n ---AECKA----TLGL-TVSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDK-LSV NC_002306_TGEV_PUR46-MAD_nsp3_29 ---DECYR----ACNL-NVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSA NC_003436_PEDV_CV777_nsp3_2982.. ---QDCKS----TLGFDDVPLDTFNAAVAEAHRYDVLLTDMSFNNFTTSYAKPEEK-FPV DQ811787_PRCV_ISU-1_nsp3_2941..7 ---EECYK----ACNL-NVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSA AY994055_FIPV_79-1146_nsp3_2948. ---EECYK----LCNL-DVTFSTFEMAINNAHRFGILITDRSFNNFWPSKIKPGSSGVSA NC_009657_BtCoV-G1_BtCoV/512/200 ---NECRE----SLGLSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEK-LAV EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---HDCKE----LLEL-DVSDDDFIKVVSDAHRFDVLITDTSFNNFCTSYAKPAEK-LSS NC_005147_HCoV-OC43_OC43_nsp3_27 DTFLSCARKSC-SIDS-DVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDN--IVA NC_006577_CoV-HKU1A_N1_nsp3_2633 DTFVGCVRKCC-SIDS-DVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDN--IVA AY884001_CoV-HKU1B_N2_nsp3_2627. DTFVGCVRKCC-SIDS-DVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDN--IVA DQ339101_CoV-HKU1C_N5_nsp3_2627. DTFVGCVRKCC-SIDS-DVETRFITKSMISAVAAGLEFTDENYNNLVPTYLKSDN--IVA NC_003045_BCoV_BCoV-ENT_nsp3_276 DTFLSCARKSC-SIDS-DVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDN--IVA NC_001846_MHV_MHV-A59_nsp3_2706. DTFIGCARRKC-AIDS-DVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDT--IVA NC_007732_PHEV_VW572_nsp3_2764.. DTFLSCARKSC-SIDS-DVGTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDN--IVA EF424621_AntelopeCoV_US/OH1/2003 DTFLSCARKSC-SIDS-DVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDN--IVA EF424622_GiCoV_US/OH3-TC/2006_ns DTFLSCARKSC-SIDS-DVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDN--IVA NC_004718_SARS-human_Tor2_nsp3_2 STFVSAARQG--VVDT-DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVEN--MTP AY304488_SARS-civet_SZ16_nsp3_27 STFVSAARQG--VVDT-DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVEN--MTP NC_009694_SARS-bat_HKU3-1_nsp3_2 STFVSAARQG--VVDT-DVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVEN--MTP AY545919_SARS-badger_CFB/SZ/94/0 STFVSAARQG--VVDT-DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVEN--MTP NC_009019_Bat-CoV-HKU4_B04f KTFTDAARGHA-GVES-DVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDS--INT NC_009020_Bat-CoV-HKU5_LMH3f KTFTDAARGPA-GVES-DVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDS--VAT NC_009021_Bat-CoV-HKU9_BF_005I KVFVGSTRAEAKDLES-DVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDT--LST NC_001451_IBV_Beaudette_nsp3_254 ---AGTLR----DALLSITKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGK-LTP AY646283_IBV-partridge_Partridge ---AGTLR----DALLSVTKDEEAVDMAIFCHNNDVEYTTDGFTNVVPSYGIDTDK-LTP AY641576_IBV-peafowl_Peafowl/GD/ ---AGTLR----DALLSITKDEEAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTGK-LTP . : .* . NC_002645_HCoV-229E_inf-1_nsp3_2 YDLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTIN NC_005831_HCoV-NL63_AmsterdamI_n YDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFN NC_002306_TGEV_PUR46-MAD_nsp3_29 MDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFN NC_003436_PEDV_CV777_nsp3_2982.. HDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFN DQ811787_PRCV_ISU-1_nsp3_2941..7 MDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFN AY994055_FIPV_79-1146_nsp3_2948. MDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFN NC_009657_BtCoV-G1_BtCoV/512/200 HDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFN EF203064_Bat-CoV-HKU2_HKU2/GD/43 FDLAHCMRSGAKVVNHNVLIKEKMPIVWNCVDFAKLSVDARKYIVKTAKVKGVTFLLTVN NC_005147_HCoV-OC43_OC43_nsp3_27 ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYN NC_006577_CoV-HKU1A_N1_nsp3_2633 ADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKACVKTGLKLKLTFN AY884001_CoV-HKU1B_N2_nsp3_2627. ADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFN DQ339101_CoV-HKU1C_N5_nsp3_2627. ADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKACVKTGLKLKLTFN NC_003045_BCoV_BCoV-ENT_nsp3_276 ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN NC_001846_MHV_MHV-A59_nsp3_2706. ADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYN NC_007732_PHEV_VW572_nsp3_2764.. ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN EF424621_AntelopeCoV_US/OH1/2003 ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN EF424622_GiCoV_US/OH3-TC/2006_ns ADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYN NC_004718_SARS-human_Tor2_nsp3_2 RDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCA AY304488_SARS-civet_SZ16_nsp3_27 RDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCA NC_009694_SARS-bat_HKU3-1_nsp3_2 RDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCA AY545919_SARS-badger_CFB/SZ/94/0 RDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCA NC_009019_Bat-CoV-HKU4_B04f LDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTS NC_009020_Bat-CoV-HKU5_LMH3f ADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTS NC_009021_Bat-CoV-HKU9_BF_005I LEVGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTS NC_001451_IBV_Beaudette_nsp3_254 RDRGFLINADASIANLRV--KNAPPVVWKFSELIKLSDSCLKYLISATVKSGVRFFITKS AY646283_IBV-partridge_Partridge RDRGFLINADAAIANLKV--KNSPPVVWKYSDLVKLSDSCLKYLISATVKSGGRFFITRS AY641576_IBV-peafowl_Peafowl/GD/ RDRGFLINADASIANLRV--KNAPPVVWKFSDLIKLSDSCLKYLISATVKSGGRFFITKS : . : : : :* :: . : : . : :* NC_002645_HCoV-229E_inf-1_nsp3_2 ENQAVTQIPATSI--VAKQ-GA NC_005831_HCoV-NL63_AmsterdamI_n DNQAITQVPATSI--VAKQ-GA NC_002306_TGEV_PUR46-MAD_nsp3_29 AVGSDDDLPYERFTESVSPKSG NC_003436_PEDV_CV777_nsp3_2982.. DCRMHTTIPTVCI--ANKK-GA DQ811787_PRCV_ISU-1_nsp3_2941..7 AVGSDDDLPYERFTESVSPKSG AY994055_FIPV_79-1146_nsp3_2948. AVGSDEDLPYERFTESVSAKSG NC_009657_BtCoV-G1_BtCoV/512/200 DRRMHLTIPTISV--ANKK-GA EF203064_Bat-CoV-HKU2_HKU2/GD/43 NNVMETTLPCVSV--LQKQ-GA NC_005147_HCoV-OC43_OC43_nsp3_27 KQMANVSVLTTPF--SLK--GG NC_006577_CoV-HKU1A_N1_nsp3_2633 KQEASVPILTTPF--SLK--GG AY884001_CoV-HKU1B_N2_nsp3_2627. KQEASVPILTTPF--SLK--GG DQ339101_CoV-HKU1C_N5_nsp3_2627. KQEASVPILTTPF--SLK--GG NC_003045_BCoV_BCoV-ENT_nsp3_276 KQMANVSVLTTPF--SLK--GG NC_001846_MHV_MHV-A59_nsp3_2706. KQEANVPILTTPF--SLK--GG NC_007732_PHEV_VW572_nsp3_2764.. KQMANVSVLTTPF--SLK--GG EF424621_AntelopeCoV_US/OH1/2003 KQMANVSVLTTPF--SLK--GG EF424622_GiCoV_US/OH3-TC/2006_ns KQMANVSVLTTPF--SLK--GG NC_004718_SARS-human_Tor2_nsp3_2 TTRQVVNVITTKI--SLK--GG AY304488_SARS-civet_SZ16_nsp3_27 TTRQVVNVITTKI--SLK--GG NC_009694_SARS-bat_HKU3-1_nsp3_2 TTRQVVNVITTKI--SLK--GG AY545919_SARS-badger_CFB/SZ/94/0 TTRQVVNVITTKI--SLK--GG NC_009019_Bat-CoV-HKU4_B04f KLRAADNILSVKF--SATKIVG NC_009020_Bat-CoV-HKU5_LMH3f RLRSADNILSVKF--SATKLSG NC_009021_Bat-CoV-HKU9_BF_005I SLKADVPCMVTPF--KI---IG NC_001451_IBV_Beaudette_nsp3_254 GAKQVIACHTQKL--LVEKKAG AY646283_IBV-partridge_Partridge GAKQVIACYTQKL--LVEKKAG AY641576_IBV-peafowl_Peafowl/GD/ GAKQVISCHTQKL--LVEKKAG . .