NC_002645_HCoV-229E_inf-1_N_2568 ------------------------MATVKW------ADASEPQR------GRQGR----- NC_005831_HCoV-NL63_AmsterdamI_N ------------------------MASVNW----------ADDR------AARKKF---- NC_002306_TGEV_PUR46-MAD_N_26917 --------------------MANQGQRVSWGDESTKTRGRSNSR------GRKNNN---- NC_003436_PEDV_CV777_N_26374..27 ------------------------MASVSF-----------QDR------GRK--R---- DQ811787_PRCV_ISU-1_N_25881..270 --------------------MASQGQRVSWVDESTKTHGRSNSR------GRKSNN---- AY994055_FIPV_79-1146_N_27014..2 --------------------MATQGQRVNWGDEPSKRRGRSNSR------GRKNND---- NC_009657_BtCoV-G1_BtCoV/512/200 ------------------------MASVKF-----------QPR------GRSKGR---- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------MATVNW----GDAVEQAESR------GRK--R---- NC_005147_HCoV-OC43_OC43_N_29104 MSFTPGKQSS-SRASSGNRSGNGI---LKW-ADQSDQFRNVQTR------GRRAQPKQTA NC_006577_CoV-HKU1A_N1_N_28320.. MSYTPGHY---AGSRSSSGNRSGILKKTSW-ADQSERNYQTFNR------GRKTQPKFTV AY884001_CoV-HKU1B_N2_N_28209..2 MSYTPGHH---AGSRSSSGNRSGILKKTSW-VDQSERSHQTYNR------GRKPQPKFTV DQ339101_CoV-HKU1C_N5_N_28149..2 MSYTPGHH---AGSRSSSGNRSGILKKTSW-VDQSERSHQTYNR------GRKPQPKFTV NC_003045_BCoV_BCoV-ENT_N_29393. MSFTPGKQSS-SRASSGNRSGNGI---LKW-ADQSDQSRNVQTR------GRRAQPKQTA NC_001846_MHV_MHV-A59_N_29669..3 MSFVPGQENAGGRSSSVNRAGNGILKKTTW-ADQTERGPNNQNR------GRRNQPKQTA NC_007732_PHEV_VW572_N_28843..30 MSFTPGKQPS-SRASSGNRSGNGILK---W-ADQSDQSRNVQTR------GRRVQSKQTA EF424621_AntelopeCoV_US/OH1/2003 MSFTPGKQSS-SRASSGNRSGNGILK---W-ADQSDQSRNVQTR------GRRAQPKQTA EF424622_GiCoV_US/OH3-TC/2006_N_ MSFTPGKQSS-SRASSGNRSGNGI---LKW-ADQSDQSRNVQTR------GRRAQPKQTA NC_004718_SARS-human_Tor2_N_2812 ------------MSDNGPQSNQRSAPRITF-GGPTDSTDNNQNG------GRNGARPKQR AY304488_SARS-civet_SZ16_N_28134 ------------MSDNGPQSNQRSAPRITF-GGPTDSTDNNQNG------GRNGARPKQR NC_009694_SARS-bat_HKU3-1_N_2810 -------------MSDNGPQSQRSAPRITF-GGPADSNDNNQDG------GRSGARPKQR AY545919_SARS-badger_CFB/SZ/94/0 ------------MSDNGPQSNQRSAPRITF-GGPTDSTDNNQNG------GRNGARPKQR NC_009019_Bat-CoV-HKU4_B04f ------------------MATPAAPRTISF-ADNNDNQPNQQQR------GRGRNP---- NC_009020_Bat-CoV-HKU5_LMH3f ------------------MATPAPPRAVVF-ANDNETPTNSQRS------GRPRTKP--- NC_009021_Bat-CoV-HKU9_BF_005I ------------MSGRNRSRSGTPSPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRG NC_001451_IBV_Beaudette_N_25873. ------------------------MASGKA-AGKTDAPAPVIKL------GGP------- AY646283_IBV-partridge_Partridge ------------------------MASVKA-SGKSDSPAPIIKL------GGP------- AY641576_IBV-peafowl_Peafowl/GD/ ------------------------MASGKT-TGKTDAPAPVIKL------GGP------- NC_007447_BoTV-1_Breda ------------------------MNSML------------------------------- NC_002645_HCoV-229E_inf-1_N_2568 ---IP----------YSLYSPLLV-DSEQPWKVIPRNLVPINKK-DKNKLIGYWNVQKR- NC_005831_HCoV-NL63_AmsterdamI_N ---PP----------PSFYMPLLVSSDKAPYRVIPRNLVPIGKG-NKDEQIGYWNVQER- NC_002306_TGEV_PUR46-MAD_N_26917 ---IP----------LSFFNPITLQQGSKFWNLCPRDFVPKGIG-NRDQQIGYWNRQTR- NC_003436_PEDV_CV777_N_26374..27 ---VP----------LSLYAPLRVTNDKPLSKVLANNAVPTNKG-NKDQQIGYWNEQIR- DQ811787_PRCV_ISU-1_N_25881..270 ---IP----------LSFFNPITLQQGSKFWNLCPRDFVPKGIG-NRDQQIGYWNRQTR- AY994055_FIPV_79-1146_N_27014..2 ---IP----------LSFYNPITLEQGSKFWNLCPRDLVPKGIG-NKDQQIGYWNRQIR- NC_009657_BtCoV-G1_BtCoV/512/200 ---VP----------LSLFAPLRVTDEKPLYKVLPNNAVPQGMG-GKDQQIGYWVEQQR- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---IP----------LSLFAPLRVTDGKNFWNVMPRNGVPTGRG-NPDQQIGYWVEQKR- NC_005147_HCoV-OC43_OC43_N_29104 TSQQP--SGGNVVPYYSWFSGITQFQKGKEFEFVEGQGVPIAPGVPATEAKGYWYRHNRR NC_006577_CoV-HKU1A_N1_N_28320.. ST-QP--Q-GNTIPHYSWFSGITQFQKGRDFKFSDGQGVPIAFGVPPSEAKGYWYRHSRR AY884001_CoV-HKU1B_N2_N_28209..2 ST-QP--Q-GNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRR DQ339101_CoV-HKU1C_N5_N_28149..2 ST-QP--Q-GNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRR NC_003045_BCoV_BCoV-ENT_N_29393. TSQQP--SGGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRR NC_001846_MHV_MHV-A59_N_29669..3 TT-QP--NSGSVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRR NC_007732_PHEV_VW572_N_28843..30 TSQQP--SGGTVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRR EF424621_AntelopeCoV_US/OH1/2003 TSQQP--SGGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRR EF424622_GiCoV_US/OH3-TC/2006_N_ TSQQP--SGGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRR NC_004718_SARS-human_Tor2_N_2812 ---RP--Q-GLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRR AY304488_SARS-civet_SZ16_N_28134 ---RP--Q-GLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRR NC_009694_SARS-bat_HKU3-1_N_2810 ---RP--Q-GLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGKDDQIGYYRRATRR AY545919_SARS-badger_CFB/SZ/94/0 ---RP--Q-GLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRR NC_009019_Bat-CoV-HKU4_B04f ---KP--R-PAPNNTVSWYTGLTQ-HGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRK NC_009020_Bat-CoV-HKU5_LMH3f ---RP--A---PNTTVSWFTGLTQ-HGKQPLAFPPGQGVPLNANSTPAQNAGYWRRQDRK NC_009021_Bat-CoV-HKU9_BF_005I SAPKPEKPKAAPPQNVSWFAPLVQ-TGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRS NC_001451_IBV_Beaudette_N_25873. ---KP--PKVGSSGNASWFQAIKAKKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR- AY646283_IBV-partridge_Partridge ---KP--PKVGSSGNASWFQALKAKKLNAPAPKFEGSGVPDNENLKNSQQHGYWRRQAR- AY641576_IBV-peafowl_Peafowl/GD/ ---KP--PKVGSSGNASWFQALKAKRLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR- NC_007447_BoTV-1_Breda ---NP-------------------------------NAVPFQPS---------------- * . ** NC_002645_HCoV-229E_inf-1_N_2568 -FRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERVEGVVWVAVDGAKTEP-TGYGVRRKN NC_005831_HCoV-NL63_AmsterdamI_N -WRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGAKTVN-TSLGNRKRN NC_002306_TGEV_PUR46-MAD_N_26917 -YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMNKP-TTLGSRGAN NC_003436_PEDV_CV777_N_26374..27 -WRMRRGERIEQPSNWHFYYLGTGPHGDLRYRTRTEGVFWVAKEGAKTEP-TNLGVRKAS DQ811787_PRCV_ISU-1_N_25881..270 -YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGVMNKP-TTLGSRGAN AY994055_FIPV_79-1146_N_27014..2 -YRIVKGQRKELAERWFFYFLGTGPHADAKFKDKIDGVFWVARDGAMNKP-TTLGTRGTN NC_009657_BtCoV-G1_BtCoV/512/200 -WRMRRGDRVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAKTQP-TGLGVRKSS EF203064_Bat-CoV-HKU2_HKU2/GD/43 -WRMQKGQRKDQPSNWHFYYLGTGPHADAPFRKRIQGVHWVAVDGAKTSP-TGLGVRNRN NC_005147_HCoV-OC43_OC43_N_29104 SFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPADIVDRDPS NC_006577_CoV-HKU1A_N1_N_28320.. SFKTADGQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWVANHQADTSTPSDVSSRDPT AY884001_CoV-HKU1B_N2_N_28209..2 SFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPT DQ339101_CoV-HKU1C_N5_N_28149..2 SFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPT NC_003045_BCoV_BCoV-ENT_N_29393. SFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPADILDRDPS NC_001846_MHV_MHV-A59_N_29669..3 SFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPS NC_007732_PHEV_VW572_N_28843..30 SFKTADGNQRQLLPRWYFYYLGTGPYAKDHYGTDIDGVFWVASNQADVNTPADIVDRDPS EF424621_AntelopeCoV_US/OH1/2003 SFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPS EF424622_GiCoV_US/OH3-TC/2006_N_ SFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPS NC_004718_SARS-human_Tor2_N_2812 -VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPN AY304488_SARS-civet_SZ16_N_28134 -VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPN NC_009694_SARS-bat_HKU3-1_N_2810 -VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPN AY545919_SARS-badger_CFB/SZ/94/0 -VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPN NC_009019_Bat-CoV-HKU4_B04f -INTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPA NC_009020_Bat-CoV-HKU5_LMH3f -INTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDGIIWVHENGATDAP-SVFGTRNPA NC_009021_Bat-CoV-HKU9_BF_005I -FQKG-GKQVLANPRWYFYYTGTGRFGDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPS NC_001451_IBV_Beaudette_N_25873. -FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPD AY646283_IBV-partridge_Partridge -YKPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPD AY641576_IBV-peafowl_Peafowl/GD/ -YKPGKGGRKSVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPD NC_007447_BoTV-1_Breda -----------------------------------------------------------P NC_002645_HCoV-229E_inf-1_N_2568 SEPEIP-HFNQK--LPNG-VTVVEEPDSRAPSRSQSRSQSR--------------GRGES NC_005831_HCoV-NL63_AmsterdamI_N QKPLEP-KFSIA--LPPE-LSVV---EFEDRSNNSSRAS----------------SRSST NC_002306_TGEV_PUR46-MAD_N_26917 NESKAL-KFDGK--VPGE-FQLE-VNQSRDNSRSRSQSR----------------SRSRN NC_003436_PEDV_CV777_N_26374..27 EKPIIP-KFSQQ--LPSV-VEIV-EPNTPPASRANSRSRSRGNGNNRSRSPSNNRGNNQS DQ811787_PRCV_ISU-1_N_25881..270 NESKAL-RFDGK--VPGE-FQLE-VNQSRDNSRSRSQSR----------------SRSRN AY994055_FIPV_79-1146_N_27014..2 NESK-PLRFDGK--IPPQ-FQLE-VNRSRNNSRSGSQSR----------------SVSRN NC_009657_BtCoV-G1_BtCoV/512/200 EKPLVP-KFKNK--LPNN-VEIV-EPTTPNNSRANSRSRSRG-------------GQSNS EF203064_Bat-CoV-HKU2_HKU2/GD/43 KEPATP-QFGFQ--LPAD-VTVV-EATSRSASRSQSRSR----------------NQSQS NC_005147_HCoV-OC43_OC43_N_29104 SDEAIPTRFPPGTVLPQG-YYIE---GSG-------RSAPN--------------SRSTS NC_006577_CoV-HKU1A_N1_N_28320.. TQEAIPTRFPPGTILPQG-YYVE---GSG-------RSASN--------------SRPGS AY884001_CoV-HKU1B_N2_N_28209..2 IQEAIPTRFSPGTILPQG-YYVE---GSG-------RSASN--------------SRPGS DQ339101_CoV-HKU1C_N5_N_28149..2 IQEAIPTRFSPGTILPQG-YYVE---GSG-------RSASN--------------SRPGS NC_003045_BCoV_BCoV-ENT_N_29393. SDEAIPTRFPPGTVLPQG-YYIE---GSG-------RSAPN--------------SRSTS NC_001846_MHV_MHV-A59_N_29669..3 SHEAIPTRFAPGTVLPQG-FYVE---GSG-------RSAPA--------------SRSGS NC_007732_PHEV_VW572_N_28843..30 SDEAIPTRFPPGTVLPQG-YYIE---GSG-------RSVPN--------------SRSTS EF424621_AntelopeCoV_US/OH1/2003 SDEAIPTRFPPGTVLPQG-YYIE---GSG-------RSAPN--------------SRSTS EF424622_GiCoV_US/OH3-TC/2006_N_ SDEAIPTRFPPGTVLPQG-YYIE---GSG-------RSAPN--------------SRSTS NC_004718_SARS-human_Tor2_N_2812 NNAATVLQLPQGTTLPKG-FYAE---GSRGGSQASSRSSSR--------------SRGNS AY304488_SARS-civet_SZ16_N_28134 NNAATVLQLPQGTTLPKG-FYAE---GSRGGSQASSRSSSR--------------SRGNS NC_009694_SARS-bat_HKU3-1_N_2810 NNAAIVLQLPQGTTLPKG-FYAE---GSRGGSQSSSRSSSR--------------SRGNS AY545919_SARS-badger_CFB/SZ/94/0 NNAATVLQLPQGTTLPKG-FYAE---GSRGGSQASSRSSSR--------------SRGNS NC_009019_Bat-CoV-HKU4_B04f NDAAIVCQFAPGTLIPKN-FHIE---GTGGNSQSSSRASSN--------------SRNSS NC_009020_Bat-CoV-HKU5_LMH3f NDPAIVTQFAPGTTLPKN-FHIE---GTGGNSQSSSRAS----------------SRSSS NC_009021_Bat-CoV-HKU9_BF_005I NDGAIPVQLAGG--IPKG-FYAE-GRGSRGNSRSSSRNS----------------SRASS NC_001451_IBV_Beaudette_N_25873. KFDQYPLRFSDG--GPDGNFRWDFIPLNRGRSGRSTAASSAAA------------SRAPS AY646283_IBV-partridge_Partridge KFDQYPLRFSDG--GPDGNFRWDFIPLNRGRSGRSTAASSAAS------------SRAPS AY641576_IBV-peafowl_Peafowl/GD/ KFDQYPLRFSDG--GPDGNFRWDFIPLNRGRSGRSTAASSAAS------------SRAPS NC_007447_BoTV-1_Breda QVVAIPMQYPSG--FPPG-FRRQRNPGFRPMFNR---------------------RRNNN . * . NC_002645_HCoV-229E_inf-1_N_2568 KPQSRNP-------------------------------SSDRNH-NSQDD-----IMKAV NC_005831_HCoV-NL63_AmsterdamI_N RNNSRDS-----------------------SRSTSRQQSRTRSDSNQSSSD----LVAAV NC_002306_TGEV_PUR46-MAD_N_26917 RSQSRG-----------------------------RQQFNNKKDDS---------VEQAV NC_003436_PEDV_CV777_N_26374..27 RGNSQNRGNNQGRGASQNRGGNNNNNNKSRNQSNNRNQSNDRGGVTSRDD-----LVAAV DQ811787_PRCV_ISU-1_N_25881..270 RSQSRG-----------------------------RQQSNNKKDDS---------VEQAV AY994055_FIPV_79-1146_N_27014..2 RSQSRG-----------------------------RHHSNNQNNN----------VEDTI NC_009657_BtCoV-G1_BtCoV/512/200 RGNSQNRG------------------DKSRNQSRNRSQSNDRGS-DSRDD-----LVAAV EF203064_Bat-CoV-HKU2_HKU2/GD/43 RSGAQTP----------------------------RVQQSSQAV-----D-----IVAAV NC_005147_HCoV-OC43_OC43_N_29104 RTSSRASS----------------------AGSRSRANSGNRTPTSGVTP-----DMADQ NC_006577_CoV-HKU1A_N1_N_28320.. RSQSRGPN----------------------NRSLSRSNSNFRHSDSIVKP-----DMADE AY884001_CoV-HKU1B_N2_N_28209..2 RSQSRGPN----------------------NRSLSRSNSNFRHSDSIVKP-----DMADE DQ339101_CoV-HKU1C_N5_N_28149..2 RSQSRGPN----------------------NRSLSRSNSNFRHSDSIVKP-----DMADE NC_003045_BCoV_BCoV-ENT_N_29393. RASSRASS----------------------AGSRSRANSGNRTPTSGVTP-----DMADQ NC_001846_MHV_MHV-A59_N_29669..3 RSQSRGPN------------------------NRARSSSNQRQPASTVKP-----DMAEE NC_007732_PHEV_VW572_N_28843..30 RASNRAPS----------------------SGSRSRANSGNRTSTSGVTP-----DMADQ EF424621_AntelopeCoV_US/OH1/2003 RASSRASS----------------------AGSRSRANSGNRTPTSGVTP-----DMADQ EF424622_GiCoV_US/OH3-TC/2006_N_ RASSRASS----------------------AGSRSRANSGNRTPTSGVTP-----DMADQ NC_004718_SARS-human_Tor2_N_2812 RNSTPGS---------------------------SRGNSPARMASGGGETALAL-LLLDR AY304488_SARS-civet_SZ16_N_28134 RNSTPGS---------------------------SRGNSPARMASGGGETALAL-LLLDR NC_009694_SARS-bat_HKU3-1_N_2810 RNSTPGS---------------------------SRGSSPARLASGGGETALAL-LLLDR AY545919_SARS-badger_CFB/SZ/94/0 RNSTPGS---------------------------SRGNSPARMASGGGETALAL-LLLDR NC_009019_Bat-CoV-HKU4_B04f RSSSRGGR----------------------STSNSRGTSPVSHGVGSAESLAALPLLLDL NC_009020_Bat-CoV-HKU5_LMH3f RSSSRNGR----------------------SNNSSRNASPAPHGVGDVVGAGTLSVLLDL NC_009021_Bat-CoV-HKU9_BF_005I RGNSRAS---------------------------SRGASPGRPAANPSTEPWMA-YLVQK NC_001451_IBV_Beaudette_N_25873. REGSRGR----------------------------RSDSGD--------------DLIAR AY646283_IBV-partridge_Partridge REGSRGR----------------------------RSGAEE--------------DLIAR AY641576_IBV-peafowl_Peafowl/GD/ REVSRGR----------------------------RSGSED--------------DLIAR NC_007447_BoTV-1_Breda GNQNRGR------------------------QNRQRVQNNNRGN---------------- NC_002645_HCoV-229E_inf-1_N_2568 AAALKSLGFDKPQEKDKKSAK--------TGTPKPSRNQSPASSQTSAKSLARSQSSETK NC_005831_HCoV-NL63_AmsterdamI_N TLALKNLGFDNQSKSPSSSGT--------STPKKPNKPLSQPRAD--------------- NC_002306_TGEV_PUR46-MAD_N_26917 LAALKKLGVDTEKQQQR--------------SRSKSKERSNSKTR--------------D NC_003436_PEDV_CV777_N_26374..27 KDALKSLGIGENPDRHKQQQKPKQEKSDNSGKNTPKKNKSRATSK--------------- DQ811787_PRCV_ISU-1_N_25881..270 LAALKKLGVDTEKQQQR--------------SRSKSKERSNSKTR--------------D AY994055_FIPV_79-1146_N_27014..2 VAVLEKLGVTDKQRSRS-----------------KPRERSDSKPR--------------D NC_009657_BtCoV-G1_BtCoV/512/200 KKALEDLGVGAAKPKGKTQ----------SGKNTP-KNKSRSGSV--------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 KQALADLGIASSQSKSQ------------SGKNTP-KPRSRAVSP----------APAPK NC_005147_HCoV-OC43_OC43_N_29104 IASLVLAKLGK--DATK-----------------P-QQVTKHTAK--------------E NC_006577_CoV-HKU1A_N1_N_28320.. IANLVLAKLGK--DS-K-----------------P-QQVTKQNAK--------------E AY884001_CoV-HKU1B_N2_N_28209..2 IASLVLAKLGK--DS-K-----------------P-QQVTKQNAK--------------E DQ339101_CoV-HKU1C_N5_N_28149..2 IASLVLAKLGK--DS-K-----------------P-QQVTKQNAK--------------E NC_003045_BCoV_BCoV-ENT_N_29393. IASLVLAKLGK--DAAK-----------------P-QQVTKQTAK--------------E NC_001846_MHV_MHV-A59_N_29669..3 IAALVLAKLGK--DAGQ-----------------P-KQVTKQSAK--------------E NC_007732_PHEV_VW572_N_28843..30 IASLVLAKLGK--DATK-----------------P-QQVTKQTAK--------------E EF424621_AntelopeCoV_US/OH1/2003 IASLVLAKLGK--DATK-----------------P-QQVTKQTAK--------------E EF424622_GiCoV_US/OH3-TC/2006_N_ IASLVLAKLGK--DATK-----------------P-QQVTKQTAK--------------E NC_004718_SARS-human_Tor2_N_2812 LNQLESKVSGKGQQQQG-------------------QTVTKKSAA--------------- AY304488_SARS-civet_SZ16_N_28134 LNQLESKVSGKGQQQQG-------------------QTVTKKSAA--------------- NC_009694_SARS-bat_HKU3-1_N_2810 LNQLESKVSGK--GQQQ-----------------PGQTVTKKSAA--------------- AY545919_SARS-badger_CFB/SZ/94/0 LNQLESKVSGKGQQQQG-------------------QTVTKKSAA--------------- NC_009019_Bat-CoV-HKU4_B04f QKRLADLESGK---SKQ-----------------P-KVVTKKDAA--------------- NC_009020_Bat-CoV-HKU5_LMH3f QKRLADLEAGK--GNKQ-----------------P-KVITKKDAQ--------------- NC_009021_Bat-CoV-HKU9_BF_005I LERLESQVSGTKPATKN-----------------P-VQVTKNEAA--------------- NC_001451_IBV_Beaudette_N_25873. AAKIIQ-------DQQK-----------------KGSRITKAKAD--------------- AY646283_IBV-partridge_Partridge AAKIIQ-------DQQR-----------------KGTRITKQKAD--------------- AY641576_IBV-peafowl_Peafowl/GD/ AARIIQ-------DQQK-----------------KGSRITKAKAD--------------- NC_007447_BoTV-1_Breda ------------------------------------------------------------ NC_002645_HCoV-229E_inf-1_N_2568 EQKHEMQKPRWKRQPNDDVTSNVTQCFGPRDLDH---NFGSAGVVANGVKAKGYPQFAEL NC_005831_HCoV-NL63_AmsterdamI_N -KPSQLKKPRWKRVPTRE--ENVIQCFGPRDFNH---NMGDSDLVQNGVDAKGFPQLAEL NC_002306_TGEV_PUR46-MAD_N_26917 TTPKNENKHTWKRTAGKG---DVTRFYGARSSSA---NFGDTDLVANGSSAKHYPQLAEC NC_003436_PEDV_CV777_N_26374..27 ER-DLKDIPEWRRIPKGE--NSVAACFGPRGGFK---NFGDAEFVEKGVDASGYAQIASL DQ811787_PRCV_ISU-1_N_25881..270 TTPKNENKHTWKRTAGKG---DVTRFYGARSSSA---NFGDSDLVANGSSAKHYPQLAEC AY994055_FIPV_79-1146_N_27014..2 TTPKNANKHTWKKTAGKG---DVTTFYGARSSSA---NFGDSDLVANGNAAKCYPQIAEC NC_009657_BtCoV-G1_BtCoV/512/200 QRAEAKDKPEWRRTPSGD--ESVEVCFGPRGGTR---NFGSSEFVAKGVNAPGYAQAASL EF203064_Bat-CoV-HKU2_HKU2/GD/43 PARKQMDKPEWKRVPNSE--EDVRKCFGPRSASR---NFGDSDLVQHGVEAKHFPTIAEL NC_005147_HCoV-OC43_OC43_N_29104 VRQKILNKPRQKRSPNKQ--CTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAEL NC_006577_CoV-HKU1A_N1_N_28320.. IRHKILTKPRQKRTPNKH--CNVQQCFGKRGPSQ---NFGNAEMLKLGTNDPQFPILAEL AY884001_CoV-HKU1B_N2_N_28209..2 IRHKILMKPRQKRTPNKF--CNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQFPILAEL DQ339101_CoV-HKU1C_N5_N_28149..2 IRHKILMKPRQKRTPNKF--CNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQFPILAEL NC_003045_BCoV_BCoV-ENT_N_29393. IRQKILNKPRQKRSPNKQ--CTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAEL NC_001846_MHV_MHV-A59_N_29669..3 VRQKILNKPRQKRTPNKQ--CPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAEL NC_007732_PHEV_VW572_N_28843..30 VRQKILNKPRQKRSPNKQ--CTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAEL EF424621_AntelopeCoV_US/OH1/2003 IRQKILNKPRQKRSPNKQ--CTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAEL EF424622_GiCoV_US/OH3-TC/2006_N_ IRQKILNKPRQKRSPNKQ--CTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAEL NC_004718_SARS-human_Tor2_N_2812 ---EASKKPRQKRTATKQ--YNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF AY304488_SARS-civet_SZ16_N_28134 ---EASKKPRQKRTATKQ--YNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF NC_009694_SARS-bat_HKU3-1_N_2810 ---EASKKPRQKRTATKQ--YNVTQAFGRRGPEQTQGNFGDQELIRQGIDYKHWPQIAQF AY545919_SARS-badger_CFB/SZ/94/0 ---EASKKPRQKRTATKQ--YNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKQWPQIAQF NC_009019_Bat-CoV-HKU4_B04f ---AAKNKMRHKRVATKG--FNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAEL NC_009020_Bat-CoV-HKU5_LMH3f ---AAKQKMRHKRVATKG--YNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAEL NC_009021_Bat-CoV-HKU9_BF_005I ---ANAKKLRHKRTAHKG--SGVTVNYGRRGPGDLEGNFGDREMIKLGTDDPRFAAAAQM NC_001451_IBV_Beaudette_N_25873. ---EMAHRRYCKRTIPPN--YRVDQVFGPRTKGK-EGNFGDDKMNEEGIKDGRVTAMLNL AY646283_IBV-partridge_Partridge ---EMTHRRFCKRTMPPG--YRVDQVFGPRTKGK-EGNFGDDKMNEEGIKDGRVTAMLNL AY641576_IBV-peafowl_Peafowl/GD/ ---EMAHRRYCKRTIPPN--YKVDQVFGPRTKGK-EGNFGDDKMNEEGIKDGRVTAMLNL NC_007447_BoTV-1_Breda --------------------IGNRQNNGQRGSRR------------------QYNQASPN * * NC_002645_HCoV-229E_inf-1_N_2568 VPSTAAMLFDSHIVS---KESGNTV--------VLTFTTRVTVPKDHPHLGKFL----EE NC_005831_HCoV-NL63_AmsterdamI_N IPNQAALFFDSEVST---DEVGDNV--------QITYTYKMLVAKDNKNLPKFI----EQ NC_002306_TGEV_PUR46-MAD_N_26917 VPSVSSILFGSYWTS---KEDGDQI--------EVTFTHKYHLPKDDPKTGQFL----QQ NC_003436_PEDV_CV777_N_26374..27 APNVAALLFGGNVAV---RELADSY--------EITYNYKMTVPKSDPNVELLV----SQ DQ811787_PRCV_ISU-1_N_25881..270 VPSVSSILFGSYWTS---KEDGDQI--------EVTFTHKYHLPKDDPKTEQFL----QQ AY994055_FIPV_79-1146_N_27014..2 VPSVSSIIFGSQWSA---EEAGDQV--------KVTLTHTYYLPKDDAKTSQFL----EQ NC_009657_BtCoV-G1_BtCoV/512/200 VPGAAALLFGGNVAT---KEMADGV--------EITYTYKMLVPKDDKNLEIFL----AQ EF203064_Bat-CoV-HKU2_HKU2/GD/43 LPTQAALAFGSEITT---KEAGDFV--------EVTYHYVMKVSKTDKNLPRFL----EQ NC_005147_HCoV-OC43_OC43_N_29104 APTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNEN NC_006577_CoV-HKU1A_N1_N_28320.. APTPGAFFFGSKLDL-VKRDSEADS--PVKDVFELHYSGSIRFDSTLPGFETIMKVLEEN AY884001_CoV-HKU1B_N2_N_28209..2 APTPGAFFFGSKLEL---FKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVLKEN DQ339101_CoV-HKU1C_N5_N_28149..2 APTPGAFFFGSKLEL---FKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVLKEN NC_003045_BCoV_BCoV-ENT_N_29393. APTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNEN NC_001846_MHV_MHV-A59_N_29669..3 APTVGAFFFGSKLEL--VKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNEN NC_007732_PHEV_VW572_N_28843..30 APTAGAFFFGSRLELAKVQNSSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNQN EF424621_AntelopeCoV_US/OH1/2003 APTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNEN EF424622_GiCoV_US/OH3-TC/2006_N_ APTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNEN NC_004718_SARS-human_Tor2_N_2812 APSASAFFGMSRIGM---EVTPSGT--------WLTYHGAIKLDDKDPQFKDNVILLNKH AY304488_SARS-civet_SZ16_N_28134 APSASAFFGMSRIGM---EVTPSGT--------WLTYHGAIKLDDKDPQFKDNVILLNKH NC_009694_SARS-bat_HKU3-1_N_2810 APSASAFFGMSRIGM---EVTPSGT--------WLTYHGAIKLDDKDPQFKDNVILLNKH AY545919_SARS-badger_CFB/SZ/94/0 APSASAFFGMSRIGM---EVTPSGT--------WLTYHGAIKLDDKDPQFKDNVILLNKH NC_009019_Bat-CoV-HKU4_B04f APSASAFMSMSQFKLTHQSNDDKGD-----PIYFLSYSGAIKLDPKNPNYKKWLELLESN NC_009020_Bat-CoV-HKU5_LMH3f APSASAFMSTSQFKVTHQSNDENGE-----PVYFLSYSGAIKLDPKNPNYNKWMEILDAN NC_009021_Bat-CoV-HKU9_BF_005I APNVSSFLFMSHLST---RDEDDAL--------WLHYKGAIKLPKDDPNYEQWTKILAEN NC_001451_IBV_Beaudette_N_25873. VPSSHACLFGSRVTP---KLQLDGL--------HLRFEFTTVVPCDDPQFDNYVKICDQC AY646283_IBV-partridge_Partridge TPSPHACLFGSRVTP---KLQPDGL--------HLRFEFTTVVPRDDPQFDNYVKICDDC AY641576_IBV-peafowl_Peafowl/GD/ VPSSHACLFGSRVTP---RLQPDGL--------HLKFEFTTVVPRDDPQFDNYVKICDQC NC_007447_BoTV-1_Breda VPFEQQLLMMANETA-----------------------YAATYPPEMQN----------- * . NC_002645_HCoV-229E_inf-1_N_2568 LNAF----------------TREMQQHPLLNPSALEFNPSQTSPATA------------- NC_005831_HCoV-NL63_AmsterdamI_N ISAF--------TKPSSIKEMQSQSSHVAQNTVL--NASIPESKPLA------------- NC_002306_TGEV_PUR46-MAD_N_26917 INAY--------ARPSEVAKEQRKRKSRSKSAERSEQDVVPDALIEN------------- NC_003436_PEDV_CV777_N_26374..27 VDAF-------KTGNAKLQRKKEKKNKRETTLQQHEEAIYDDVGAPS------------- DQ811787_PRCV_ISU-1_N_25881..270 INAY--------ARPSEVAKEQRKRKSRSKSAERSEQEVVPDSLIEN------------- AY994055_FIPV_79-1146_N_27014..2 IDAY--------KRPSEVAKDQRQRRSRSKSADK-KPEELSVTLVEA------------- NC_009657_BtCoV-G1_BtCoV/512/200 VDAY-------KLGDPKPQRKVKRSRTPTPKPATEPVYDDVAADPTY------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 VAAY--------SKPSQIRRSQSQQDLNVDAPAF--TPAPPATPVSR------------- NC_005147_HCoV-OC43_OC43_N_29104 LNAYQ-QQDGMMNMSPKPQRQRGHKNGQGENDNI--SVAVPKSRVQQ------------- NC_006577_CoV-HKU1A_N1_N_28320.. LNAYV-NSNQNTDSDSLSSKPQRK--RGVKQLPE--QFDSLNLSAGT------------- AY884001_CoV-HKU1B_N2_N_28209..2 LDAY--VNSNQNTVSGSLSPKPQRKRGVKQSPES---FDSLNLSADT------------- DQ339101_CoV-HKU1C_N5_N_28149..2 LDAY--VNSNQNTVSGSLSPKPQRKRGVKQSPES---FDSLNLSADT------------- NC_003045_BCoV_BCoV-ENT_N_29393. LNAYQ-QQDGTMNMSPKPQRQRGQKNGQGENDNI--SVAAPKSRVQQ------------- NC_001846_MHV_MHV-A59_N_29669..3 LNAY------QKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPK------------- NC_007732_PHEV_VW572_N_28843..30 LNAYQHQEDGMINISPKPQRQRGQKNGQVENDNV--SVAVPKSRVQQ------------- EF424621_AntelopeCoV_US/OH1/2003 LNAYQ-QQDGTMNMSPKPQRQRGQKNGQGENDNI--SVAAPKSRVQQ------------- EF424622_GiCoV_US/OH3-TC/2006_N_ LNAYQ-QQDGTMNMSPKPQRQRGQKNGQGENDNI--SVAAPKSRVQQ------------- NC_004718_SARS-human_Tor2_N_2812 IDAY-------KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLP------------- AY304488_SARS-civet_SZ16_N_28134 IDAY-------KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLP------------- NC_009694_SARS-bat_HKU3-1_N_2810 IDAY-------KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLP------------- AY545919_SARS-badger_CFB/SZ/94/0 IDAY-------KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLP------------- NC_009019_Bat-CoV-HKU4_B04f IDAY-------KTFPKKERKPKTTEDGAVASSSASQMEDVDAKPQRK------------- NC_009020_Bat-CoV-HKU5_LMH3f IDAY-------KSFPKKERKQKPSGDDAATAPATSQMEDVPELPPKQ------------- NC_009021_Bat-CoV-HKU9_BF_005I LNAY-------KDFPPTEPKKDKKKKEETAQDTV--IFEDASTGTDQTVVKVWVKDQDAQ NC_001451_IBV_Beaudette_N_25873. VDGV--GTRPKDDEPKPKSRSSSRPATRGNSPAPRQQRPKKEKKLKK------------- AY646283_IBV-partridge_Partridge VDGV--GTRPKDEVVRPKSRSSSRPATRASSPAPKQQRPKKEKKPKK------------- AY641576_IBV-peafowl_Peafowl/GD/ VDGV--GTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPKKEKKPKK------------- NC_007447_BoTV-1_Breda ------------VAPTKLVKIAKRAAMQIVSGHA--TVEISNGTEDS------------- NC_002645_HCoV-229E_inf-1_N_2568 ---------------EPVRDEVSI---------ETDIIDEVN-------------- NC_005831_HCoV-NL63_AmsterdamI_N ---------------DDDSA-------------IIEIVNEVLH------------- NC_002306_TGEV_PUR46-MAD_N_26917 ---------------YTDVFDDT----------QVEIIDEVTN------------- NC_003436_PEDV_CV777_N_26374..27 ---------------DVTHANLEWDTAVDGGDTAVEIINEIFD-------TGN--- DQ811787_PRCV_ISU-1_N_25881..270 ---------------YTDVFDDT----------QVEMIDEVTN------------- AY994055_FIPV_79-1146_N_27014..2 ---------------YTDVFDDT----------QVEMIDEVTN------------- NC_009657_BtCoV-G1_BtCoV/512/200 ---------------ANLEWDTTVED-------GVEMINEVFD-------TQN--- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---------------NPDFPEE-----------EVEMVDEIIN------------- NC_005147_HCoV-OC43_OC43_N_29104 ---------------NKSRELTAEDIS------LLKKMDEPYT----EDTSEI--- NC_006577_CoV-HKU1A_N1_N_28320.. ---------------QHISNDFTPEDHS-----LLATLDDPYV-----EDSVA--- AY884001_CoV-HKU1B_N2_N_28209..2 ---------------QHISNDFTPEDHSLLATLDDPYVEDSVA------------- DQ339101_CoV-HKU1C_N5_N_28149..2 ---------------QHISNDFTPEDHSLLATLDDPYVEDSVA------------- NC_003045_BCoV_BCoV-ENT_N_29393. ---------------NKIRELTAEDIS------LLKKMDEPFT----EDTSEI--- NC_001846_MHV_MHV-A59_N_29669..3 ---------------SSVQRNVSRELTPEDRSLLAQILDDGVVPDGLEDDSNV--- NC_007732_PHEV_VW572_N_28843..30 ---------------NKSRELTAEDIS------LLKKMDEPYT----EDTSEI--- EF424621_AntelopeCoV_US/OH1/2003 ---------------NKIRELTAEDIS------LLKKMDEPFT----EDTSEI--- EF424622_GiCoV_US/OH3-TC/2006_N_ ---------------NKIRELTAEDIS------LLKKMDEPFT----EDTSEI--- NC_004718_SARS-human_Tor2_N_2812 ---------------AADMDDFSRQLQNSMSGASADSTQA---------------- AY304488_SARS-civet_SZ16_N_28134 ---------------AADMDDFSRQLQNSMSGASADSTQA---------------- NC_009694_SARS-bat_HKU3-1_N_2810 ---------------AADMDDFSRQLQHSMSGASADSTQA---------------- AY545919_SARS-badger_CFB/SZ/94/0 ---------------AADMDDFSRQLQNSMSGASADSTQA---------------- NC_009019_Bat-CoV-HKU4_B04f ---------------PKSRVAGSITMRSGSLPALQDVTFDSEA------------- NC_009020_Bat-CoV-HKU5_LMH3f -------------QRKKRVVQGSIPQRSAGVPSFEDVVDAIFP------DSEA--- NC_009021_Bat-CoV-HKU9_BF_005I TDDEWLGGDETVYEDEDDRPKTQRRHKKRGSTASRVTIADPTN----AGAERS--- NC_001451_IBV_Beaudette_N_25873. ---------------QDDEADKALTSDEERNNAQLEFYDEPKVINWGDAALGENEL AY646283_IBV-partridge_Partridge ---------------QDDEVDKALTSDEERNNAQLEFDDEPKVINWGDSALGENEL AY641576_IBV-peafowl_Peafowl/GD/ ---------------QDDEVDKALTSDEERNNAQLEFDDEPKVINWGDSALGENEL NC_007447_BoTV-1_Breda ---------------NKRVATFT--------------IKVVMN-------------