NC_002645_HCoV-229E_inf-1_S_2057 ------MFVLLVAYALLHIAGCQTTN---------------------------------- NC_005831_HCoV-NL63_AmsterdamI_S ---MKLFLILLVLPLASCFFTCNSNANLSMLQ--------------LGVPDNSSTIVTGL NC_002306_TGEV_PUR46-MAD_S_20365 --MKKLFVVLVVMPLIYGDNFPCSKLTNRTIGNQWNLIETFLLNYSSRLPPNSDVVLGDY NC_003436_PEDV_CV777_S_20638..24 MRSLIYFWLLLPVLPTLSLPQDVTRCQSTTNFRRFFSK--------FNVQAPAVVVLGGY DQ811787_PRCV_ISU-1_S_20345..240 --MKTLFVVLVIM----------------------------------------------- AY994055_FIPV_79-1146_S_20436..2 MIVLVTCLLLLCSYHTVLSTTNNECIQVNVTQLAGNENLIRDFLF-SNFKEEGSVVVGGY NC_009657_BtCoV-G1_BtCoV/512/200 --MKYTLLFCVVFATVSFGFADNERCNKTVNLTRLFSK--------FDIQPPSQVVLAGL EF203064_Bat-CoV-HKU2_HKU2/GD/43 --MKLFIVFVLLFRVCYCCDYVDFRLFNGIFST-------------SRGLSNTTTVITGA NC_005147_HCoV-OC43_OC43_S_23644 ----MFLILLISLPTAFAVIGDLKCTSD------------------TSYINDKDTGPPPI NC_006577_CoV-HKU1A_N1_S_22942.. -----MLLIIFILPTTLAVIGDFNCT--------------------NFAINDLNTTVPRI AY884001_CoV-HKU1B_N2_S_22862..2 -----MFLIIFILPTTLAVIGDFNCT--------------------NSFINDYNKTIPRI DQ339101_CoV-HKU1C_N5_S_22802..2 -----MFLIIFILPTTLAVIGDFNCT--------------------NSFINDYNKTIPRI NC_003045_BCoV_BCoV-ENT_S_23641. ----MFLILLISLPTAFAVIGDLKCT--------------------TVSINDVDTGVPSI NC_001846_MHV_MHV-A59_S_23929..2 ----MLFVFILFLPSCLGYIGDFRCIQ-------------------LVNSNGANVSAPSI NC_007732_PHEV_VW572_S_23427..27 ----MFFILLISLPSAFAVLGDLKCN--------------------TSSINDVDTGVPSI EF424621_AntelopeCoV_US/OH1/2003 ----MFLILLISLPTAFAVIGDLKCT--------------------TVSINDVDTGVPSI EF424622_GiCoV_US/OH3-TC/2006_S_ ----MFLILLISLPTAFAVIGDLKCT--------------------TVSINDVDTGVPSI NC_004718_SARS-human_Tor2_S_2149 -----MFIFLLFLTLTSGSDLDRCTTFD------------------DVQAPNYTQHTSS- AY304488_SARS-civet_SZ16_S_21477 -----MFIFLLFLTLTSGSDLDRCTTFD------------------DVQAPNYTQHTSS- NC_009694_SARS-bat_HKU3-1_S_2147 -----MKILIFAFLANLAKAQEGCGIIS------------------RKPQPKMAQVSSS- AY545919_SARS-badger_CFB/SZ/94/0 -----MFIFLLFLTLTSGSDLDRCTTFD------------------DVQAPNYTQHTSS- NC_009019_Bat-CoV-HKU4_B04f ----MTLLMCLLMSLLIFVRGCDSQFVD------------------MSPASNTSECLESQ NC_009020_Bat-CoV-HKU5_LMH3f ---MIRSVLVLMCSLTFIGNLTRGQSVDMGHN--------------GTGSCLDSQVQPDY NC_009021_Bat-CoV-HKU9_BF_005I ------MLLILVLGVSLAAASRPECFNPR-----------------FTLTPLNHTLNYTS NC_001451_IBV_Beaudette_S_20368. MLVTPLLLVTLLCALCSAVLYDSSSYVYYYQ---------------SAFRP--------- AY646283_IBV-partridge_Partridge MLGKSLFLVTILCALCSANLFDSANNYVYYYQ--------------SAFRP--------- AY641576_IBV-peafowl_Peafowl/GD/ MLVTPLLLVTLLCVLCSAALYDSSSYVYYYQ---------------SAFRP--------- NC_007447_BoTV-1_Breda ------MFLCFCTAAILCLWINSGGAVVVSNETLVVCEPVSYPYSLQVLRSFSQRVNLRT . . NC_002645_HCoV-229E_inf-1_S_2057 ----------------------------------GLNTSYSVC----------------- NC_005831_HCoV-NL63_AmsterdamI_S LPT------HWFCANQSTSVYSANGFFYIDVG--NHRSAFALH--------TGYYD---- NC_002306_TGEV_PUR46-MAD_S_20365 FPTVQ----PWFNCIRNDSNDLYVTLENLK----ALYWDYATENITWNHRQRLNVVVNGY NC_003436_PEDV_CV777_S_20638..24 LPSMN--SSSWYCGTGIETASGVHGIFLSYI---DSGQGFEIG--------ISQEPFDPS DQ811787_PRCV_ISU-1_S_20345..240 ------------------------------------------------------------ AY994055_FIPV_79-1146_S_20436..2 YPTEVWYNCSRTARTTAFQYFNNIHAFYFVMEAMENSTGNARG------KPLLFHVHGEP NC_009657_BtCoV-G1_BtCoV/512/200 LPNQ---TAQWKCTTETNKRDEGVGVKGVFLSYVSSGRGFTIG--------VSQYNFDPS EF203064_Bat-CoV-HKU2_HKU2/GD/43 YPSTN--KAKWFC---------------------PTNVGRPVG----------------- NC_005147_HCoV-OC43_OC43_S_23644 STDTV--DVTN-----------------------GLGTYYVLD--------RVY------ NC_006577_CoV-HKU1A_N1_S_22942.. SEYVV--DVSY-----------------------GLGTYYILD--------RVY------ AY884001_CoV-HKU1B_N2_S_22862..2 SEDVV--DVSL-----------------------GLGTYYVLN--------RVY------ DQ339101_CoV-HKU1C_N5_S_22802..2 SEDVV--DVSL-----------------------GLGTYYVLN--------RVY------ NC_003045_BCoV_BCoV-ENT_S_23641. STDTV--DVTN-----------------------GLGTYYVLD--------RVY------ NC_001846_MHV_MHV-A59_S_23929..2 STETV--EVSQ-----------------------GLGTYYVLD--------RVY------ NC_007732_PHEV_VW572_S_23427..27 SSEVV--DVTN-----------------------GLGTFYVLD--------RVY------ EF424621_AntelopeCoV_US/OH1/2003 STDTV--DVTN-----------------------GLGTYYVLD--------RVY------ EF424622_GiCoV_US/OH3-TC/2006_S_ STDTV--DVTN-----------------------GLGTYYVLD--------RVY------ NC_004718_SARS-human_Tor2_S_2149 ----------------------------------MRGVYYPDE----------------- AY304488_SARS-civet_SZ16_S_21477 ----------------------------------MRGVYYPDE----------------- NC_009694_SARS-bat_HKU3-1_S_2147 ----------------------------------RRGVYYNDD----------------- AY545919_SARS-badger_CFB/SZ/94/0 ----------------------------------MRGVYYPDE----------------- NC_009019_Bat-CoV-HKU4_B04f VDAAAFSKLMWPYPIDPSK---------------VDGIIYPLG--------RTY------ NC_009020_Bat-CoV-HKU5_LMH3f FESV---HTTWPMPIDTSK---------------AEGVIYPNG--------KSY------ NC_009021_Bat-CoV-HKU9_BF_005I IKAK------------------------------VSNVLLPDP----------------- NC_001451_IBV_Beaudette_S_20368. ----------------------------------PSGWHLQGG----------------- AY646283_IBV-partridge_Partridge ----------------------------------PNGWHLQGG----------------- AY641576_IBV-peafowl_Peafowl/GD/ ----------------------------------PNGWHLHGG----------------- NC_007447_BoTV-1_Breda KRAVI--DDAWSFAYQISTNSLNVNGWYVNFTS-PLGWSYPNG--------KLFGIVLGS NC_002645_HCoV-229E_inf-1_S_2057 ------------------------------------------------------------ NC_005831_HCoV-NL63_AmsterdamI_S ANQYYIYVTNEIGLNASVTLKICKF-SRNTTFDFLSNASSSFDCIVNLLFTEQL------ NC_002306_TGEV_PUR46-MAD_S_20365 PYSITVTTTRNFNSAEGAIICICKGSPPTTTTESSLTCNWGSECRLNHKFPICPSNSEAN NC_003436_PEDV_CV777_S_20638..24 GYQLYLHKATNGNTNAIARLRICQFPDNKTLGPTVNDVTTGRNCLFNKAIPAYM----RD DQ811787_PRCV_ISU-1_S_20345..240 ------------------------------------------------------------ AY994055_FIPV_79-1146_S_20436..2 VSVIISAYRDDVQQRPLLKHGLVCITKNRHINYEQFTSNQWNSTCTGADRKIPFSVIPTD NC_009657_BtCoV-G1_BtCoV/512/200 TYQLYLHRDTNGNSNAFAYLRICKWPSKKWLQSTSNMDTSGRFCLVNKKIPAAF----TD EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------------------------------------------ NC_005147_HCoV-OC43_OC43_S_23644 ------------------------------------------------------------ NC_006577_CoV-HKU1A_N1_S_22942.. ------------------------------------------------------------ AY884001_CoV-HKU1B_N2_S_22862..2 ------------------------------------------------------------ DQ339101_CoV-HKU1C_N5_S_22802..2 ------------------------------------------------------------ NC_003045_BCoV_BCoV-ENT_S_23641. ------------------------------------------------------------ NC_001846_MHV_MHV-A59_S_23929..2 ------------------------------------------------------------ NC_007732_PHEV_VW572_S_23427..27 ------------------------------------------------------------ EF424621_AntelopeCoV_US/OH1/2003 ------------------------------------------------------------ EF424622_GiCoV_US/OH3-TC/2006_S_ ------------------------------------------------------------ NC_004718_SARS-human_Tor2_S_2149 ------------------------------------------------------------ AY304488_SARS-civet_SZ16_S_21477 ------------------------------------------------------------ NC_009694_SARS-bat_HKU3-1_S_2147 ------------------------------------------------------------ AY545919_SARS-badger_CFB/SZ/94/0 ------------------------------------------------------------ NC_009019_Bat-CoV-HKU4_B04f ------------------------------------------------------------ NC_009020_Bat-CoV-HKU5_LMH3f ------------------------------------------------------------ NC_009021_Bat-CoV-HKU9_BF_005I ------------------------------------------------------------ NC_001451_IBV_Beaudette_S_20368. ------------------------------------------------------------ AY646283_IBV-partridge_Partridge ------------------------------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------------------------------------ NC_007447_BoTV-1_Breda DAMMRASQSFF------------------------------------------------- NC_002645_HCoV-229E_inf-1_S_2057 ------------------------------------------------------------ NC_005831_HCoV-NL63_AmsterdamI_S GAPLGITISGETVRLHLYNVTRTFYVPAAYKLTKLSVKCYFNYSC-----------VFSV NC_002306_TGEV_PUR46-MAD_S_20365 CGNMLYGLQWFADEVVAYLHGASYRISFENQWSGTVTFGDMRATTLEVAGTLVDLWWFNP NC_003436_PEDV_CV777_S_20638..24 GKDIVVGITWDNDRVTVFADKIYHFYLKNDWSRVATRCYNRRSCA----------MQYVY DQ811787_PRCV_ISU-1_S_20345..240 ------------------------------------------------------------ AY994055_FIPV_79-1146_S_20436..2 NGTKIYGLEWNDDFVTAYISGRSYHLNINTNWFNNVTLLYSRSSTATWEYSAAYAYQGVS NC_009657_BtCoV-G1_BtCoV/512/200 HANMVVGITWDQDRVTFYTDKVYHFYVPNNRWSRVVSWCSAADSC---------AMQYIN EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------------------------------------------ NC_005147_HCoV-OC43_OC43_S_23644 ------------------------------------------------------------ NC_006577_CoV-HKU1A_N1_S_22942.. ------------------------------------------------------------ AY884001_CoV-HKU1B_N2_S_22862..2 ------------------------------------------------------------ DQ339101_CoV-HKU1C_N5_S_22802..2 ------------------------------------------------------------ NC_003045_BCoV_BCoV-ENT_S_23641. ------------------------------------------------------------ NC_001846_MHV_MHV-A59_S_23929..2 ------------------------------------------------------------ NC_007732_PHEV_VW572_S_23427..27 ------------------------------------------------------------ EF424621_AntelopeCoV_US/OH1/2003 ------------------------------------------------------------ EF424622_GiCoV_US/OH3-TC/2006_S_ ------------------------------------------------------------ NC_004718_SARS-human_Tor2_S_2149 ------------------------------------------------------------ AY304488_SARS-civet_SZ16_S_21477 ------------------------------------------------------------ NC_009694_SARS-bat_HKU3-1_S_2147 ------------------------------------------------------------ AY545919_SARS-badger_CFB/SZ/94/0 ------------------------------------------------------------ NC_009019_Bat-CoV-HKU4_B04f ------------------------------------------------------------ NC_009020_Bat-CoV-HKU5_LMH3f ------------------------------------------------------------ NC_009021_Bat-CoV-HKU9_BF_005I ------------------------------------------------------------ NC_001451_IBV_Beaudette_S_20368. ------------------------------------------------------------ AY646283_IBV-partridge_Partridge ------------------------------------------------------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------------------------------------ NC_007447_BoTV-1_Breda ------------------------------------------------------------ NC_002645_HCoV-229E_inf-1_S_2057 -------------NGCVGYSE------------NVFAVE--SGGYIPSDFAFNNWFLLTN NC_005831_HCoV-NL63_AmsterdamI_S VNATVTVNVTTHNGRVVNYTVCDD---CNGYTDNIFSVQ--QDGRIPNGFPFNNWFLLTN NC_002306_TGEV_PUR46-MAD_S_20365 VYDVS-YYRVNNKNGTTVVSNCTD--QCASYVANVFTTQ--PGGFIPSDFSFNNWFLLTN NC_003436_PEDV_CV777_S_20638..24 TPTYYMLNVTSAGEDGIYYEPCTA--NCTGYAANVFATD--SNGHIPEGFSFNNWFLLSN DQ811787_PRCV_ISU-1_S_20345..240 ---------PLIYGDNFPCSNCTD--QCASYVANVFVTQ--PGGFIPSDFSFNNWFLLTN AY994055_FIPV_79-1146_S_20436..2 NFT---YYKLNNTNGLKTYELCEDYEHCTGYATNVFAPT--SGGYIPDGFSFNNWFLLTN NC_009657_BtCoV-G1_BtCoV/512/200 STIYYNLNVTTPGPGGITYSVCTK--HCTGLADNVFSTD--QGGHIPPIFPYNNWFLLTN EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---------TGVGIGVYAQTA--------------------QASYETGG---------SG NC_005147_HCoV-OC43_OC43_S_23644 ------LNTTLFLNGYYPTSG------------STYRNMALKGSVLLSRLWFKPPFLSDF NC_006577_CoV-HKU1A_N1_S_22942.. ------LNTTILFTGYFPKSG------------ANFRDLSLKGTTYLSTLWYQKPFLSDF AY884001_CoV-HKU1B_N2_S_22862..2 ------LNTTLLFTGYFPKSG------------ANFRDLALKGSKYLSTLWYKPPFLSDF DQ339101_CoV-HKU1C_N5_S_22802..2 ------LNTTLLFTGYFPKSG------------ANFRDLALKGSIYLSTLWYKPPFLSDF NC_003045_BCoV_BCoV-ENT_S_23641. ------LNTTLLLNGYYPTSG------------STYRNMALKGTLLLSTLWFKPPFLSDF NC_001846_MHV_MHV-A59_S_23929..2 ------LNATLLLTGYYPVDG------------SKFRNLALTGTNSVSLSWFQPPYLSQF NC_007732_PHEV_VW572_S_23427..27 ------LNTTLLLNGYYPISG------------ATFRNMALKGTRLLSTLWFKPPFLSPF EF424621_AntelopeCoV_US/OH1/2003 ------LNTTLLLNGYYPTSG------------STYRNMALKGTLLLSTLWFKPPFLSDF EF424622_GiCoV_US/OH3-TC/2006_S_ ------LNTTLLLNGYYPTSG------------STYRNMALKGTLLLSTLWFKPPFLSDF NC_004718_SARS-human_Tor2_S_2149 ---------IFRSDTLYLTQDLFL---------PFYSNV---TGFHTINHTFGNP-VIPF AY304488_SARS-civet_SZ16_S_21477 ---------IFRSDTLYLTQDLFL---------PFYSNV---TGFHTINHTFDNP-VIPF NC_009694_SARS-bat_HKU3-1_S_2147 ---------IFRSDVLHLTQDYFL-------PFDSNLTQYFSLNVDSDRYTYFDNPILDF AY545919_SARS-badger_CFB/SZ/94/0 ---------IFRSDTLYLTQDLFL---------PFYSNV---TGFHTINHTFDNP-VIPF NC_009019_Bat-CoV-HKU4_B04f ------SNITLAYTGLFPLQG----DLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDF NC_009020_Bat-CoV-HKU5_LMH3f ------SNITLTYTGLYPKAN----DLGKQYLFSDGHSA--PGRLNNLFVSNYSSQVESF NC_009021_Bat-CoV-HKU9_BF_005I ---------YIAYSGQTLRQNLFMADMSN----TILYPVTPPANGANGGFIYNTS-IIPV NC_001451_IBV_Beaudette_S_20368. ------AYAVVNISSEFNNAG--------------------------------------S AY646283_IBV-partridge_Partridge ------AYAVVNSTNYTNNAG--------------------------------------S AY641576_IBV-peafowl_Peafowl/GD/ ------AYAVVNISSESNNAG--------------------------------------S NC_007447_BoTV-1_Breda ------TYDVISYVGQRPNLDCQINDLVNGGLDSWYSTV--RVDNCGNYPCYG-----GG NC_002645_HCoV-229E_inf-1_S_2057 TSSVVD---------GVVRSFQPLLLNCLWSVS-GLRFTTGFVYFNGT-----GRGDCKG NC_005831_HCoV-NL63_AmsterdamI_S GSTLVD---------GVSRLYQPLRLTCLWPVP-GLKSSTGFVYFNAT--G--SDVNCNG NC_002306_TGEV_PUR46-MAD_S_20365 SSTLVS---------GKLVTKQPLLVNCLWPVP-SFEEAASTFCFEGA-----GFDQCNG NC_003436_PEDV_CV777_S_20638..24 DSTLLH---------GKVVSNQPLLVNCLLAIPKIYGLGQFFSFNHTM------DGVCNG DQ811787_PRCV_ISU-1_S_20345..240 SSTLVS---------GKLVTKQPLLVNCLWPVP-SFEEAASTFCFEGA-----DFDQCNG AY994055_FIPV_79-1146_S_20436..2 SSTFVS---------GRFVTNQPLLINCLWPVP-SFGVAAQEFCFEGA-----QFSQCNG NC_009657_BtCoV-G1_BtCoV/512/200 TSTLVQ---------GVTRVFQPFLVNCLVALPKLQGLTTTLSFDS-------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 AGGYTF---------SVSPKHVTNLTWSLWVHR---PWGANAN----------------- NC_005147_HCoV-OC43_OC43_S_23644 INGIFA---------KVKNTKVIKDRVMYSEFP-AITIGSTFVNTS-------------- NC_006577_CoV-HKU1A_N1_S_22942.. NNGIFS---------RVKNTKLYVNKTLYSEFS-TIVIGSVFINNS-------------- AY884001_CoV-HKU1B_N2_S_22862..2 NNGIFS---------KVKNTKLYVNNTLYSEFS-TIVIGSVFVNTS-------------- DQ339101_CoV-HKU1C_N5_S_22802..2 NNGIFS---------KVKNTKLYVNNTLYSEFS-TIVIGSVFVNTS-------------- NC_003045_BCoV_BCoV-ENT_S_23641. TNGIFA---------KVKNTKVIKDGVMYSEFP-AITIGSTFVNTS-------------- NC_001846_MHV_MHV-A59_S_23929..2 NDGIFA---------KVQNLKTSTPSGATAYFP-TIVIGSLFGYTS-------------- NC_007732_PHEV_VW572_S_23427..27 NDGIFA---------KVKNSRFFKDGVIYSEFP-AITIGSTFVNTS-------------- EF424621_AntelopeCoV_US/OH1/2003 TNGIFA---------KVKNTKVIKDGVMYSEFP-AITIGSTFVNTS-------------- EF424622_GiCoV_US/OH3-TC/2006_S_ TNGIFA---------KVKNTKVIKDGVMYSEFP-AITIGSTFVNTS-------------- NC_004718_SARS-human_Tor2_S_2149 KDGIYF---------AATEKSNVVRGWV---------FGSTMNNKS-------------- AY304488_SARS-civet_SZ16_S_21477 KDGIYF---------AATEKSNVVRGWV---------FGSTMNNKS-------------- NC_009694_SARS-bat_HKU3-1_S_2147 GDGVYF---------AATEKSNVIRGWI---------FGSSFDNTT-------------- AY545919_SARS-badger_CFB/SZ/94/0 KDGIYF---------ATTEKSNVVRGWV---------FGSTMDNKS-------------- NC_009019_Bat-CoV-HKU4_B04f DNGFVVRIGAAANSTGTIVISPSVNTKIKKAYP-AFILGSSLTNTSAG------QPLYAN NC_009020_Bat-CoV-HKU5_LMH3f DDGFVVRIGAAANKTGTTVISQSTFKPIKKIYP-AFLLGHSVGNYTPS----NRTGRYLN NC_009021_Bat-CoV-HKU9_BF_005I SAGLFV---------NTWMYRQPASSRAYCQEPFGVAFGDTFENDRIA------------ NC_001451_IBV_Beaudette_S_20368. SSGCTV---------GIIHGGRVVNASSIAMTA--------------------------- AY646283_IBV-partridge_Partridge ANECTI---------GVIKDVYNQSAAAIAMTA--------------------------- AY641576_IBV-peafowl_Peafowl/GD/ SPGCIV---------GTIHGGRVVNASSIAMTA--------------------------- NC_007447_BoTV-1_Breda KPGCSI---------GRPYMANGVCTRVLSTTQ-S--PGIQYEIYSGQDYAVYQITPYTQ NC_002645_HCoV-229E_inf-1_S_2057 FSSDVLSDVIR-------------YNL---------NFEENLRRGTIL-FKT---SYGVV NC_005831_HCoV-NL63_AmsterdamI_S YQHNSVVDVMR-------------YNLNFS------ANSLDNLKSGVI-VFK-TLQYDVL NC_002306_TGEV_PUR46-MAD_S_20365 AVLNNTVDVIR-------------FNLNFT------TNVQSGKGATVF-SLN-TTGGVTL NC_003436_PEDV_CV777_S_20638..24 AAVDRAPEALR-------------FNINDT------SVILAEGSIVLH-TAL----GTNL DQ811787_PRCV_ISU-1_S_20345..240 AVLNNTVDVIR-------------FNLNFT------TNVQSGKGATVF-SLN-TTGGVTL AY994055_FIPV_79-1146_S_20436..2 VSLNNTVDVIR-------------FNLNFT------ADVQSGMGATVF-SLN-TTGGVIL NC_009657_BtCoV-G1_BtCoV/512/200 -----PLNVPG---------------FSCNGANGSSSAEAFRFNVNDT-KLF---VGAGA EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------VTVRLC-----RWWQKFSFNETAH-FQP---AGPSS NC_005147_HCoV-OC43_OC43_S_23644 YSVVVQPRTIN-STQDGYNKLQGLLEVSVC------QYNMCEYPQTIC-HPN--LGNHRK NC_006577_CoV-HKU1A_N1_S_22942.. YTIVVQPHNGV-------------LEITAC------QYTMCEYPHTIC-KSK---GSSRN AY884001_CoV-HKU1B_N2_S_22862..2 YTIVVQPHNGI-------------LEITAC------QYTMCEYPHTVC-KSK---GSIRN DQ339101_CoV-HKU1C_N5_S_22802..2 YTIVVQPHNGI-------------LEITAC------QYTMCEYPHTVC-KSK---GSIRN NC_003045_BCoV_BCoV-ENT_S_23641. YSVVVQPHTTI-----LGNKLQGFLEISVC------QYTMCEYPNTIC-NPN--LGNQRV NC_001846_MHV_MHV-A59_S_23929..2 YTVVIEPYNGV-------------IMASVC------QYTICLLPYTDC-KPN-TNGNKLI NC_007732_PHEV_VW572_S_23427..27 YSIVVEPHTLL-----INGNLQGLLQISVC------QYTMCEYPHTIC-HPN--LGNQRI EF424621_AntelopeCoV_US/OH1/2003 YSVVVQPHTTI-----LGNKLQGFLEISVC------QYTMCEYPNTIC-NPN--LGNQRV EF424622_GiCoV_US/OH3-TC/2006_S_ YSVVVQPHTTI-----LGNKLQGFLEISVC------QYTMCEYPNTIC-NPN--LGNQRV NC_004718_SARS-human_Tor2_S_2149 QSVIIINNSTN-------------VVIRAC------NFELCDNPFFAV-SKP---MGTQT AY304488_SARS-civet_SZ16_S_21477 QSVIIINNSTN-------------VVIRAC------NFELCDNPFFAV-SKP---MGTQT NC_009694_SARS-bat_HKU3-1_S_2147 QSAVIVNNSTH-------------IIIRVC------NFNLCKEPMYTV-SRG-----TQQ AY545919_SARS-badger_CFB/SZ/94/0 QSVIIINNSTN-------------VVIRAC------NFELCDNPFFVV-SKP---MGTRT NC_009019_Bat-CoV-HKU4_B04f YSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVSYFIYETVHNDC-QSTINRNASLN NC_009020_Bat-CoV-HKU5_LMH3f HTLVILPDGCGTILHAFYCVLHPRTQQNCAGETNFKSLSLWDTPASDCVSGSYNQEATLG NC_009021_Bat-CoV-HKU9_BF_005I -ILIMAPDNLGSWSAVAPRNQTNIYLLVCS------NATLCINPGFNR-WGP---AGSFI NC_001451_IBV_Beaudette_S_20368. ------PSSGM-------------------------AWSSSQFCTAHC-NFS---DTTVF AY646283_IBV-partridge_Partridge ------PLQGM-------------------------AWSKSQFCSAHC-NFS---EITVF AY641576_IBV-peafowl_Peafowl/GD/ ------PSSGM-------------------------AWSSSQFCTAHC-NFS---DTTVF NC_007447_BoTV-1_Breda YTLTMPSGTPG------YCQQTP-LYVECG------SWTPYRVHAYGC-DKA-TQGCKYT NC_002645_HCoV-229E_inf-1_S_2057 VFYCTNNTLV------SGDAHIPFGTVLG---NFYCFV----NTTIGNETTSAFVGA--- NC_005831_HCoV-NL63_AmsterdamI_S -FYCSNSSSG--VLDTT----IPFGPSSQ---PYYCFI----NSTINTTHVSTFVGI--- NC_002306_TGEV_PUR46-MAD_S_20365 EISCYTVSDS----SFFSYGEIPFGVTDG---PRYCYV-------HYNGTALKYLGT--- NC_003436_PEDV_CV777_S_20638..24 SFVCSNSSDP--HLAIFAI---PLGATEV---PYYCFL----KVDTYNSTVYKFLAV--- DQ811787_PRCV_ISU-1_S_20345..240 EISCYNDTGS--DSSFSSYGEIPFGVTDG---PRYCYV-------LYNGTALKYLGT--- AY994055_FIPV_79-1146_S_20436..2 EISCYSDTVS--ESSSYSYGEIPFGITDG---PRYCYV-------LYNGTALKYLGT--- NC_009657_BtCoV-G1_BtCoV/512/200 VTLNTVDGVNVSIVCSNNATQPTRSNNLQEDLPYYCFT----NTSSGTNHTVKFLSV--- EF203064_Bat-CoV-HKU2_HKU2/GD/43 AFECLVNG--------------SFPSSQH---KGYMF-----GVTWYNDFVRII------ NC_005147_HCoV-OC43_OC43_S_23644 ELWHLDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT---- NC_006577_CoV-HKU1A_N1_S_22942.. ESWHFDKSEP---LCLFKK---NFTYNVS---TDWLYF----HFYQERGTFYAYYA---- AY884001_CoV-HKU1B_N2_S_22862..2 ESWHIDSSEP---LCLFKK---NFTYNVS---ADWLYF----HFYQERGVFYAYYA---- DQ339101_CoV-HKU1C_N5_S_22802..2 ESWHIDSSEP---LCLFKK---NFTYNVS---ADWLYF----HFYQERGVFYAYYA---- NC_003045_BCoV_BCoV-ENT_S_23641. ELWHWDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT---- NC_001846_MHV_MHV-A59_S_23929..2 GFWHTDVKPP---ICVLKR---NFTLNVN---ADAFYF----HFYQHGGTFYAYYA---- NC_007732_PHEV_VW572_S_23427..27 ELWHYDTDVV---SCLYRR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT---- EF424621_AntelopeCoV_US/OH1/2003 ELWHWDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT---- EF424622_GiCoV_US/OH3-TC/2006_S_ ELWHWDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT---- NC_004718_SARS-human_Tor2_S_2149 HTMIFDNAFN----CTFEYISDAFSLDVS---EKSGNFKHLREFVFKNKDGFLYVYKGYQ AY304488_SARS-civet_SZ16_S_21477 HTMIFDNAFN----CTFEYISDAFSLDVS---EKSGNFKHLREFVFKNKDGFLYVYKGYQ NC_009694_SARS-bat_HKU3-1_S_2147 NAWVYQSAFN----CTYDRVEKSFQLDTT---PKTGNFKDLREYVFKNRDGFLSVYQTYT AY545919_SARS-badger_CFB/SZ/94/0 HTMIFDNAFN----CTFEYISDAFSLDVS---EKSGNFKHLREFVFKNKDGFLYVYKGYQ NC_009019_Bat-CoV-HKU4_B04f SFKSFFDLVN----CTFFN---SWDITAD---ETKEWF----GITQDTQGVHLYSSR--- NC_009020_Bat-CoV-HKU5_LMH3f AFKVYFDLIN----CTFRY---NYTITED---ENAEWF----GITQDTQGVHLYSSR--- NC_009021_Bat-CoV-HKU9_BF_005I APDALVDHSN---SCFVNN---TFSVNIS---TSRISL----AFLFKDGDLLIYHSGWLP NC_001451_IBV_Beaudette_S_20368. VTHCYKH--G---GC-------PLTGMLQ---QNLIRV-----SAMKNGQLFYNLTVSVA AY646283_IBV-partridge_Partridge VTHCYSSGSG---SC-------PITGMIP---QGHIRI-----SAMKNGSLFYNLTVSVS AY641576_IBV-peafowl_Peafowl/GD/ VTHCYRY--D---GC-------PITGMLQ---KNFIRV-----SAMKNGQLFYNLTVSVA NC_007447_BoTV-1_Breda ISSDWVVAFKSKITAVTLPPDLKVPVVQK---VTKRLGVTSPDYFWLIKQAYQYLS---- NC_002645_HCoV-229E_inf-1_S_2057 ----LPKTVREF-VISRTGHFYING-YRYFTLGNVEAVN--FNVTT----AETTDFCTVA NC_005831_HCoV-NL63_AmsterdamI_S ----LPPTVREI-VVARTGQFYING-FKYFDLGFIEAVN--FNVTT----ASATDFWTVA NC_002306_TGEV_PUR46-MAD_S_20365 ----LPPSVKEI-AISKWGHFYING-YNFFSTFPIDCIS--FNLTT----GDSDVFWTIA NC_003436_PEDV_CV777_S_20638..24 ----LPPTVREI-VITKYGDVYVNG-FGYLHLGLLDAVT--INFTGHGTDDDVSGFWTIA DQ811787_PRCV_ISU-1_S_20345..240 ----LPPSVKEI-AISKWGHFYING-YNFFSTFPIDCIS--FNLTT----GDSDVFWTIA AY994055_FIPV_79-1146_S_20436..2 ----LPPSVKEI-AISKWGHFYING-YNFFSTFPIGCIS--FNLTT----GVSGAFWTIA NC_009657_BtCoV-G1_BtCoV/512/200 ----FPPIIREF-VITKYGNVYVNG-YIYLRTRPLTAVH----LNASSHSQDVAGFWTIA EF203064_Bat-CoV-HKU2_HKU2/GD/43 ----FPPT---------VFELQLDG-LQWEYVQFTGPVN----------AGRMTKFNVVT NC_005147_HCoV-OC43_OC43_S_23644 ----DTGVVTKF-----LFNVYL---GMALSHYYVMPLT--CNSKVKN--GFTLEYWVTP NC_006577_CoV-HKU1A_N1_S_22942.. ----DSGMPTTF-----LFSLYL---GTLLSHYYVLPLT--CNAISSNTDNETLQYWVTP AY884001_CoV-HKU1B_N2_S_22862..2 ----DVGMPTTF-----LFSLYL---GTILSHYYVMPLT--CKAISSNTDNETLEYWVTP DQ339101_CoV-HKU1C_N5_S_22802..2 ----DVGMPTTF-----LFSLYL---GTILSHYYVMPLT--CNAISSNTDNETLEYWVTP NC_003045_BCoV_BCoV-ENT_S_23641. ----DTGVVTKF-----LFNVYL---GTVLSHYYVMPLT--CNS------ALTLEYWVTP NC_001846_MHV_MHV-A59_S_23929..2 ----DKPSATTF-----LFSVYI---GDILTQYYVLPFI--CNPTAGS--TFAPRYWVTP NC_007732_PHEV_VW572_S_23427..27 ----DTGFVTKF-----LFKLYL---GTVLSHYYVMPLT--CDS------ALSLEYWVTP EF424621_AntelopeCoV_US/OH1/2003 ----DTGVVTKF-----LFNVYL---GTVLSHYYVMPLT--CNS------ALTLEYWVTP EF424622_GiCoV_US/OH3-TC/2006_S_ ----DTGVVTKF-----LFNVYL---GTVLSHYYVMPLT--CNS------ALTLEYWVTP NC_004718_SARS-human_Tor2_S_2149 PIDVVRDLPSGFNTLKPIFKLPL---GINITNFRAILTA--FSPAQDIWGTSAAAYFVGY AY304488_SARS-civet_SZ16_S_21477 PIDVVRDLPSGFNTLKPIFKLPL---GIKITNFRAILTA--FLPAQDTWGTSAAAYFVGY NC_009694_SARS-bat_HKU3-1_S_2147 AVNLPRGLPTGFSVLKPILKLPF---GINITSYRVVMAM--FSQTTSNFLPESAAYYVGN AY545919_SARS-badger_CFB/SZ/94/0 PIDVVRDLPSGFNTLKPIFKLPL---GINITNFRAILTA--FSPAQDTWGTSAAAYFVGY NC_009019_Bat-CoV-HKU4_B04f ----KGDLYGGN--MFRFATLPV---YEGIKYYTVIPRS--FRSKA-NKREAWAAFYVYK NC_009020_Bat-CoV-HKU5_LMH3f ----KENVFRNN--MFHFATLPV---YQKILYYTVIPRS---IRSPFNDRKAWAAFYIYK NC_009021_Bat-CoV-HKU9_BF_005I TSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNAIDKGDGMCTNFDVNLHVAH NC_001451_IBV_Beaudette_S_20368. ----KYPTFRSFQCVNNLTSVYLNGDLVYTSNETIDVTS----AGVYFKAGGPITYKVMR AY646283_IBV-partridge_Partridge ----KYPNFKSFQCVNNFTSVYLNGDLVFTSNTTTDVKS----AGVYFKAGGPVNYNIMK AY641576_IBV-peafowl_Peafowl/GD/ ----KYPTFRSFQCVNNLTSVHLNGDLVYTSNETTDVTS----AGVYFKAGGPITYKVMR NC_007447_BoTV-1_Breda ----QAAISPNYALFSALSNSLYQQSLVLTDLCYGSPFF--VAQECYNNALYLPDAVFTT NC_002645_HCoV-229E_inf-1_S_2057 LASYADVLVNVSQTSIANIIYC-NSVINRLRCDQLSFDVPDG--------------FYST NC_005831_HCoV-NL63_AmsterdamI_S FATFVDVLVNVSATNIQNLLYC-DSPFEKLQCEHLQFGLQDG--------------FYSA NC_002306_TGEV_PUR46-MAD_S_20365 YTSYTEALVQVENTAITKVTYC-NSHVNNIKCSQITANLNNG--------------FYPV NC_003436_PEDV_CV777_S_20638..24 STNFVDALIEVQGTSIQRILYC-DDPVSQLKCSQVAFDLDDG--------------FYPI DQ811787_PRCV_ISU-1_S_20345..240 YTSYTEALVQVENTAITKVTYC-NSYVNNIKCSQLTANLNNG--------------FYPV AY994055_FIPV_79-1146_S_20436..2 YTSYTEALVQVENTAIKNVTYC-NSHINNIKCSQLTANLNNG--------------FYPV NC_009657_BtCoV-G1_BtCoV/512/200 ATNFTDVLVEVNNTGIQRLLYC-DTPENSVKCSQLSFELEDG--------------FYSM EF203064_Bat-CoV-HKU2_HKU2/GD/43 EISSVLVLT-DQSGAVTRYSYCADGFVNGLQCKLRLFDIPPG--------------VYSN NC_005147_HCoV-OC43_OC43_S_23644 LTSRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIAPPTG--------------VYEL NC_006577_CoV-HKU1A_N1_S_22942.. LSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTG--------------VYDL AY884001_CoV-HKU1B_N2_S_22862..2 LSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTG--------------VYDL DQ339101_CoV-HKU1C_N5_S_22802..2 LSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTG--------------VYDL NC_003045_BCoV_BCoV-ENT_S_23641. LTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTG--------------VYEL NC_001846_MHV_MHV-A59_S_23929..2 LVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTG--------------VYEL NC_007732_PHEV_VW572_S_23427..27 LTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTG--------------VYEL EF424621_AntelopeCoV_US/OH1/2003 LTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTG--------------VYEL EF424622_GiCoV_US/OH3-TC/2006_S_ LTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTG--------------VYEL NC_004718_SARS-human_Tor2_S_2149 LKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKG--------------IYQT AY304488_SARS-civet_SZ16_S_21477 LKPTKFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKG--------------IYQT NC_009694_SARS-bat_HKU3-1_S_2147 LKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKG--------------IYQT AY545919_SARS-badger_CFB/SZ/94/0 LKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKG--------------IYQT NC_009019_Bat-CoV-HKU4_B04f LHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTG--------------VYSV NC_009020_Bat-CoV-HKU5_LMH3f LHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETG--------------VYSV NC_009021_Bat-CoV-HKU9_BF_005I LINRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDPPTG--------------VYPL NC_001451_IBV_Beaudette_S_20368. EVK---ALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDG--------------FYPF AY646283_IBV-partridge_Partridge EFK---VLAYFVNGTVQDVILCDDTPRGLLACQYNNGNFSDG--------------FYPF AY641576_IBV-peafowl_Peafowl/GD/ EVK---ALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDG--------------FYPF NC_007447_BoTV-1_Breda LFSILFNWDYQVNYPVKNVLQTNETFLQLPTTGYLGQTVSQGRMLNLFKDAIVFLDFYDT * .* NC_002645_HCoV-229E_inf-1_S_2057 SPIQS-----------VELPVSIVSLPVYHKHTFIVLYVDFKPQSGGGKCFNCYPAGVNI NC_005831_HCoV-NL63_AmsterdamI_S NFLDD-----------NVLPETYVALPIYYQHTDINFTATASF---GGSCYVCKPHQVNI NC_002306_TGEV_PUR46-MAD_S_20365 SSSEV-----------GLVNKSVVLLPSFYTHTIVNITIGLGMKR-SGYGQPIASTLSNI NC_003436_PEDV_CV777_S_20638..24 SSRNL----LS-----HEQPISFVTLPSFNDHSFVNITVSAAF----GGLSSANLVASDT DQ811787_PRCV_ISU-1_S_20345..240 SSSEV-----------GLVNKSVVLLPSFYTHTIVNITIGLGMKR-SGYGQPIASTLSNI AY994055_FIPV_79-1146_S_20436..2 ASSEV-----------GFVNKSVVLLPSFFTYTAVNITIDLGMKL-SGYGQPIASTLSNI NC_009657_BtCoV-G1_BtCoV/512/200 TADNV----YA-----VTKPHTFVTLPTFNDHGFVNVTVGGNF----DSSYPPKFTANGT EF203064_Bat-CoV-HKU2_HKU2/GD/43 SEVEY---PVA-----LYTVVHNMSVCPQRPESYCGSNYCPFK---RVVFSNCVVNYTSW NC_005147_HCoV-OC43_OC43_S_23644 NGYTV--QPIAD----VYRRKLNLPNCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL NC_006577_CoV-HKU1A_N1_S_22942.. SGFTV--KPVAT----VHRRIPDLPDCDIDKWLNNFNVPSPLNWE-RKIFSNCNFNLSTL AY884001_CoV-HKU1B_N2_S_22862..2 SGFTV--KPVAT----VYRRIPNLPDCDIDNWLNNVSVPSPLNWE-RRIFSNCNFNLSTL DQ339101_CoV-HKU1C_N5_S_22802..2 SGFTV--KPVAT----VYRRIPNLPDCDIDNWLNNVSVPSPLNWE-RRIFSNCNFNLSTL NC_003045_BCoV_BCoV-ENT_S_23641. NGYTV--QPIAD----VYRRIPNLPDCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL NC_001846_MHV_MHV-A59_S_23929..2 SGYTV--QPVGV----VYRRVANLPACNIEEWLTARSVPSPLNWE-RKTFQNCNFNLSSL NC_007732_PHEV_VW572_S_23427..27 NGYTV--QPVAT----VYRRIPDLPNCDIEAWLNSKTVSSPLNWE-RKIFSNCNFNMGRL EF424621_AntelopeCoV_US/OH1/2003 NGYTV--QPIAD----VYRRIPNLPDCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL EF424622_GiCoV_US/OH3-TC/2006_S_ NGYTV--QPIAD----VYRRIPNLPDCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL NC_004718_SARS-human_Tor2_S_2149 SNFRV--VPSGD----VVRFPNITNLCPFGEVFNATKFPSVYAWE-RKKISNCVADYSVL AY304488_SARS-civet_SZ16_S_21477 SNFRV--VPSGD----VVRFPNITNLCPFGEVFNATKFPSVYAWE-RKRISNCVADYSVL NC_009694_SARS-bat_HKU3-1_S_2147 SNFRV--SPTQE----VIRFPNITNRCPFDKVFNATRFPNVYAWE-RTKISDCVADYTVL AY545919_SARS-badger_CFB/SZ/94/0 SNFRV--VPSGD----VVRFPNITNLCPFGEVFNATKFPSVYAWE-RKRISNCVADYSVL NC_009019_Bat-CoV-HKU4_B04f SSYEA--SATG-----TFIEQPNATECDFSP-MLTGVAPQVYNFK-RLVFSNCNYNLTKL NC_009020_Bat-CoV-HKU5_LMH3f SSFEA--SPRG-----EFIEQATTQECDFTP-MLTGTPPPIYNFK-RLVFTNCNYNLTKL NC_009021_Bat-CoV-HKU9_BF_005I SRYRA--QVAG-----FVRVTQRGSYCT-PPYSVLQDPPQPVVWR-RYMLYDCVFDFTVV NC_001451_IBV_Beaudette_S_20368. TNSSLVKQKFI-----VYRENSVNTTCTLHNFIFHNET-----------GANPNPSG--- AY646283_IBV-partridge_Partridge TNSSLVKEKFI-----VYRENSVNTTLTLTNYTFYNVTNAS-----------PNRGG--- AY641576_IBV-peafowl_Peafowl/GD/ INSSLVKQKFI-----VYRENSVNTTFTLHNFTFHNET-----------GANPNPSG--- NC_007447_BoTV-1_Breda KFYRTNDGPGGDIFAVVVKQVPVIAYSAFRIEQQTGDYLAVKCKD-VTQATLAPHPSRVV NC_002645_HCoV-229E_inf-1_S_2057 TLANFNETKGPLCVDTSH-----FTTKYVAVYANVGRWSASINTG--------------- NC_005831_HCoV-NL63_AmsterdamI_S SL----NGNTSVCVRTSHFSIRYIYNRVKSGSPGDSSWHIYLKSG--------------- NC_002306_TGEV_PUR46-MAD_S_20365 TLPMQDHNTDVYCIRSDQF------SVYVHSTCKSALWDNIFKRNCTDVLDATAV---IK NC_003436_PEDV_CV777_S_20638..24 TI----NGFSSFCVDTRQFTITLFYNVT----------------------NSYGYVSKSQ DQ811787_PRCV_ISU-1_S_20345..240 TLPTQDNNTDVYCILSDQF------SVYVHSTCKSALWDNVFKRNCTDVLDATAV---IK AY994055_FIPV_79-1146_S_20436..2 TLPMQDNNTDVYCIRSNQF------SVYVHSTCKSSLWDNIFNQDCTDVLEATAV---IK NC_009657_BtCoV-G1_BtCoV/512/200 LV----NNGTVVCVTSNQF-----------------TLRHDFMVGYSADMRKGIF---EY EF203064_Bat-CoV-HKU2_HKU2/GD/43 TSGLLRD---------------------YQHLVLPNGKFNPF------------------ NC_005147_HCoV-OC43_OC43_S_23644 MSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT NC_006577_CoV-HKU1A_N1_S_22942.. LRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTT AY884001_CoV-HKU1B_N2_S_22862..2 LRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDIS DQ339101_CoV-HKU1C_N5_S_22802..2 LRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDIS NC_003045_BCoV_BCoV-ENT_S_23641. MSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT NC_001846_MHV_MHV-A59_S_23929..2 LRYVQAESLFCNNIDASKVYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTA NC_007732_PHEV_VW572_S_23427..27 MSFIQADSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTA EF424621_AntelopeCoV_US/OH1/2003 MSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT EF424622_GiCoV_US/OH3-TC/2006_S_ MSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT NC_004718_SARS-human_Tor2_S_2149 YNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD AY304488_SARS-civet_SZ16_S_21477 YNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD NC_009694_SARS-bat_HKU3-1_S_2147 YNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDD AY545919_SARS-badger_CFB/SZ/94/0 YNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD NC_009019_Bat-CoV-HKU4_B04f LSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFA NC_009020_Bat-CoV-HKU5_LMH3f LSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFS NC_009021_Bat-CoV-HKU9_BF_005I VDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALPDN NC_001451_IBV_Beaudette_S_20368. -----VQNIQTYQTKTAQSGYYNFNFSFLSSFVYKES----------------NFMYGSY AY646283_IBV-partridge_Partridge -----VQSIPTYQTQTAQSGYYNFNLSFLSSFVYKES----------------NYMYGSY AY641576_IBV-peafowl_Peafowl/GD/ -----VQNIQTYQTQTAQSGYYNFNFSFLSSFVYKES----------------NFMYGSY NC_007447_BoTV-1_Breda LLARHMSMWSIAAANSTTIYCPIYTLTQFGSLDISTSWYFHTLAQPSGPIHQVSMPLLST NC_002645_HCoV-229E_inf-1_S_2057 --NCPFSFGKV------NNF--------VKFGSVCFSLK-------DIPGGCAMPIVANW NC_005831_HCoV-NL63_AmsterdamI_S --TCPFSFSKL------NNF--------QKFKTICFSTV-------EVPGSCNFPLEATW NC_002306_TGEV_PUR46-MAD_S_20365 TGTCPFSFDKL------NNY--------LTFNKFCLSLS-------PVGANCKFDVAART NC_003436_PEDV_CV777_S_20638..24 DSNCPFTLQSV------NDY--------LSFSKFCVSTS-------LLAGACTIDLFGYP DQ811787_PRCV_ISU-1_S_20345..240 TGTCPFSFDKL------NNY--------LTFNKFCLSLS-------PVGANCKFDVVART AY994055_FIPV_79-1146_S_20436..2 TGTCPFSFDKL------NNY--------LTFNKFCLSLS-------PVGANCKFDVAART NC_009657_BtCoV-G1_BtCoV/512/200 SSTCPFNRETI------NNY--------LTFGRICFSTS-------PADGACELKYYVWN EF203064_Bat-CoV-HKU2_HKU2/GD/43 -TECNGLNRIV------DDC-------VTGFVLRVGRGT-------AVNRTVITPYLKPN NC_005147_HCoV-OC43_OC43_S_23644 ATSCQLYYNLPAANVSVSRFNPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAP NC_006577_CoV-HKU1A_N1_S_22942.. SSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNFNLS---------SHSVVYSRYCFSVN AY884001_CoV-HKU1B_N2_S_22862..2 SSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNVS---------SYDVVYSDHCFSVN DQ339101_CoV-HKU1C_N5_S_22802..2 SSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNLS---------SYDVVYSDHCFSVN NC_003045_BCoV_BCoV-ENT_S_23641. ATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAS NC_001846_MHV_MHV-A59_S_23929..2 ATSCQLHYTLPKNNVTINNHNPSSWNRRYGFNDAGVFGK------NQHDVVYAQQCFTVR NC_007732_PHEV_VW572_S_23427..27 VSSCQLYYSLPAANVSVTHYNPSSWNRRYGFNNQSF------GSRGLHDAVYSQQCFNTP EF424621_AntelopeCoV_US/OH1/2003 ATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAP EF424622_GiCoV_US/OH3-TC/2006_S_ ATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAP NC_004718_SARS-human_Tor2_S_2149 FMGCVLAWNTRNIDATSTGN--------YNYKYRYLRHG----KLRPFERDISNVPFSPD AY304488_SARS-civet_SZ16_S_21477 FMGCVLAWNTRNIDATSTGN--------YNYKYRYLRHG----KLRPFERDISNVPFSPD NC_009694_SARS-bat_HKU3-1_S_2147 FTGCVIAWNTA----------------KHDTGNYYYRSH----------RKTKLKPFERD AY545919_SARS-badger_CFB/SZ/94/0 FMGCVLAWNTRNIDATSTGN--------YNYKYRYLRHG----KLRPFERDISNVPYSPD NC_009019_Bat-CoV-HKU4_B04f NPTCRVMASVLANVTITKPH-------AYGYISKCSRLT-------GANQDVETPLYINP NC_009020_Bat-CoV-HKU5_LMH3f NPTCRVLATVP------QNLTTITKPSNYAYLTECYKTS-------AYGKNY---LYNAP NC_009021_Bat-CoV-HKU9_BF_005I FYGCLHAFYLN-------------------------STA-------PYAVANRFPIKPGG NC_001451_IBV_Beaudette_S_20368. HPSCKFRLETI------NNG--------LWFNSLSVSIA-----YGPLQGGCKQSVFKGR AY646283_IBV-partridge_Partridge HPACNFRLETI------NNG--------LWFNSLSVSLA-----YGPLQGGCKQSVFSSR AY641576_IBV-peafowl_Peafowl/GD/ HPSCNFRLETI------NNG--------LWFNSLSVSIA-----YGPLQGGCKQSVFSGR NC_007447_BoTV-1_Breda AAAGVYMHPMV----------------EHWVTLLTQTQD-------VYQPSMFNMGVNKS NC_002645_HCoV-229E_inf-1_S_2057 AYSKYYTI---------------------------------------------------- NC_005831_HCoV-NL63_AmsterdamI_S HYTSYTIV---------------------------------------------------- NC_002306_TGEV_PUR46-MAD_S_20365 RTNEQVVR---------------------------------------------------- NC_003436_PEDV_CV777_S_20638..24 AFGSGVKL---------------------------------------------------- DQ811787_PRCV_ISU-1_S_20345..240 RTNDQVVR---------------------------------------------------- AY994055_FIPV_79-1146_S_20436..2 RTNEQVVR---------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/200 TIGAVSHL---------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 ECFGWSWN---------------------------------------------------- NC_005147_HCoV-OC43_OC43_S_23644 KNFCPCKLNG--S-CVGSGPG-----KNNGIGTCPAGTNYLTC------DN------LCT NC_006577_CoV-HKU1A_N1_S_22942.. NTFCPCAKPSFASSCKSHKPP---------SASCPIGTNYRSCESTTVLDHTDWCRCSCL AY884001_CoV-HKU1B_N2_S_22862..2 SDFCPCADPSVVNSCVKSKPL---------SAICPAGTKYRHCDLDTTLYVNNWCRCSCL DQ339101_CoV-HKU1C_N5_S_22802..2 SDFCPCADPSVVNSCAKSKPP---------SAICPAGTKYRHCDLDTTLYVKNWCRCSCL NC_003045_BCoV_BCoV-ENT_S_23641. TNFCPCKLDG--SLCVGNGPGIDAGYKTSGIGTCPAGTNYLTC------HNAAQCDCLCT NC_001846_MHV_MHV-A59_S_23929..2 SSYCPCAQPDIVSPCTTQTKP--------------------------------------- NC_007732_PHEV_VW572_S_23427..27 NTYCPCRT----SQCIGG----------AGTGTCPVGTTVRKC--FAAVTNATKCTCWCQ EF424621_AntelopeCoV_US/OH1/2003 TNFCPCKLDG--SLCVGSGSGIDAGSKHTGIGTCPAGTNYLTC------HNAAQCDCLCT EF424622_GiCoV_US/OH3-TC/2006_S_ TNFCPCKLDG--SLCVGSGSGIDAGYKHTGIGTCPAGTNYLTC------HNAAQCDCLCT NC_004718_SARS-human_Tor2_S_2149 GKPCTPPA---------------------------------------------------- AY304488_SARS-civet_SZ16_S_21477 GKPCTPPA---------------------------------------------------- NC_009694_SARS-bat_HKU3-1_S_2147 LSSDDGNG---------------------------------------------------- AY545919_SARS-badger_CFB/SZ/94/0 GKPCTPPA---------------------------------------------------- NC_009019_Bat-CoV-HKU4_B04f GEYSICRD---------------------------------------------------- NC_009020_Bat-CoV-HKU5_LMH3f GAYTPCLS---------------------------------------------------- NC_009021_Bat-CoV-HKU9_BF_005I RQSNSAFI---------------------------------------------------- NC_001451_IBV_Beaudette_S_20368. ATCCYAYS---------------------------------------------------- AY646283_IBV-partridge_Partridge ATCCYAYS---------------------------------------------------- AY641576_IBV-peafowl_Peafowl/GD/ ATCCYAYS---------------------------------------------------- NC_007447_BoTV-1_Breda VTLTTQLQ---------------------------------------------------- NC_002645_HCoV-229E_inf-1_S_2057 ---------------------------------------------------GSLYVSWSD NC_005831_HCoV-NL63_AmsterdamI_S ---------------------------------------------------GALYVTWSE NC_002306_TGEV_PUR46-MAD_S_20365 ----------------------------------------------------SLYVIYEE NC_003436_PEDV_CV777_S_20638..24 ---------------------------------------------------TSLYFQFTK DQ811787_PRCV_ISU-1_S_20345..240 ----------------------------------------------------SLYVIYEE AY994055_FIPV_79-1146_S_20436..2 ----------------------------------------------------SLYVIYEE NC_009657_BtCoV-G1_BtCoV/512/200 --------------------------------------------------AGTLYVQHTK EF203064_Bat-CoV-HKU2_HKU2/GD/43 -------------------------------------------------DYQDSIYDWWI NC_005147_HCoV-OC43_OC43_S_23644 PDPITFKATGTYKCPQTKSLVGIGEHCSGLAVKSDYCG--GN----SCTCRPQAFLGWSA NC_006577_CoV-HKU1A_N1_S_22942.. PDPIT--AYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSY AY884001_CoV-HKU1B_N2_S_22862..2 PDPIS--TYSPNTCPQKKVVVGIGEHCPGLGINEEKCG--TQLNHSSCSCSPDAFLGWSF DQ339101_CoV-HKU1C_N5_S_22802..2 PDPIS--TYSPNTCPQKKVVVGIGEHCPGLGINEEKCG--TQLNHSSCFCSPDAFLGWSF NC_003045_BCoV_BCoV-ENT_S_23641. PDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCG--GN----PCTCQPQAFLGWSV NC_001846_MHV_MHV-A59_S_23929..2 ----------------KSAFVNVGDHCEGLGVLEDNCG--NADPHKGCICANNSFIGWSH NC_007732_PHEV_VW572_S_23427..27 PDPSTYKGVNAWTCPQSKVSIQPGQHCPGLGLVEDDCS--GN----PCTCKPQAFIGWSS EF424621_AntelopeCoV_US/OH1/2003 PDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCG--GN----PCSCQPQAFLGWSV EF424622_GiCoV_US/OH3-TC/2006_S_ PDPITSN-----KCPQTKYLVGIGEHCSGLAIKSDHCG--GN----PCSCQPQAFLGWSV NC_004718_SARS-human_Tor2_S_2149 ----------------------------------------------LNCYWPLNDYGFYT AY304488_SARS-civet_SZ16_S_21477 ----------------------------------------------LNCYWPLKDYGFYT NC_009694_SARS-bat_HKU3-1_S_2147 -------------------------------------------------VYTLSTYDFNP AY545919_SARS-badger_CFB/SZ/94/0 ----------------------------------------------PNCYWPLRGYGFYT NC_009019_Bat-CoV-HKU4_B04f -------------------FSPGGFSEDGQVFKRTL----------TQFEGGGLLIGVGT NC_009020_Bat-CoV-HKU5_LMH3f -------------------LASRGFSTK------------------YQSHSDGELTTTGY NC_009021_Bat-CoV-HKU9_BF_005I ----------------------------------------------DTVINAAHYSPFSY NC_001451_IBV_Beaudette_S_20368. -----------------------------YGGPSLCKGVYSGELDHNFECGLLVYVTKSG AY646283_IBV-partridge_Partridge -----------------------------YNGPRACKGVYAGELLQNFECGLLVYVTKSD AY641576_IBV-peafowl_Peafowl/GD/ -----------------------------YGGPSLCKGVYSGELGLNFECGLLVYVTKSG NC_007447_BoTV-1_Breda -------------------------------------------------AYAQVYTAWFL NC_002645_HCoV-229E_inf-1_S_2057 GDGI-----------------TGVPQPVEGVSSFMNVTLDK--CTKYNIYDVSGVGVIRV NC_005831_HCoV-NL63_AmsterdamI_S GNSI-----------------TGVPYPVSGIREFSNLVLNN--CTKYNIYDYVGTGIIRS NC_002306_TGEV_PUR46-MAD_S_20365 GDNI-----------------VGVPSDNSGVHDLSVLHLDS--CTDYNIYGRTGVGIIRQ NC_003436_PEDV_CV777_S_20638..24 GELI-----------------TGTPKPLEGITDVSFMTLDV--CTKYTIYGFKGEGIITL DQ811787_PRCV_ISU-1_S_20345..240 GDNI-----------------VGVPSDNSGLHDLSVLHLDS--CTDYNIYGRTGVGIIRQ AY994055_FIPV_79-1146_S_20436..2 GDNI-----------------VGVPSDNSGLHDLSVLHLDS--CTDYNIYGRTGVGIIRR NC_009657_BtCoV-G1_BtCoV/512/200 GDII-----------------TGTPKPLQGLNDISELHLDT--CTTYTIYGFRGDGVIRL EF203064_Bat-CoV-HKU2_HKU2/GD/43 ADFVST---------------GAFVCEKNPDAPRTGV------CITYTIEKVTFQGVLYE NC_005147_HCoV-OC43_OC43_S_23644 DSCLQGDKCNIFANFILHDVNSGLTCSTDLQKANTDIILGV--CVNYDLYGILGQGIFVE NC_006577_CoV-HKU1A_N1_S_22942.. DTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDV--CVDYDLYGITGQGIFKE AY884001_CoV-HKU1B_N2_S_22862..2 DSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEVSTGV--CVNYDLYGITGQGIFKE DQ339101_CoV-HKU1C_N5_S_22802..2 DSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGV--CVNYDLYGITGQGIFKE NC_003045_BCoV_BCoV-ENT_S_23641. DSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGV--CVNYDLYGITGQGIFVE NC_001846_MHV_MHV-A59_S_23929..2 DTCLVNDRCQIFANILLNGINSGTTCSTDLQLPNTEVVTGI--CVKYDLYGITGQGVFKE NC_007732_PHEV_VW572_S_23427..27 ETCLQNGRCNIFANFILNDVNSGTTCSTDLQQGNTNITTDV--CVNYDLYGITGQGILIE EF424621_AntelopeCoV_US/OH1/2003 DSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGV--CVNYDLYGITGQGIFVE EF424622_GiCoV_US/OH3-TC/2006_S_ DSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGV--CVNYDLYGITGQGIFVE NC_004718_SARS-human_Tor2_S_2149 TTGIGY---QPYRVVVLSFELLNAPATVCGPKLSTDLIKNQ--CVNFNFNGLTGTGVLTP AY304488_SARS-civet_SZ16_S_21477 TSGIGY---QPYRVVVLSFELLNAPATVCGPKLSTDLIKNQ--CVNFNFNGLTGTGVLTP NC_009694_SARS-bat_HKU3-1_S_2147 NVPVAY---QATRVVVLSFELLNAPATVCGPKLSTELVKNQ--CVNFNFNGLKGTGVLTS AY545919_SARS-badger_CFB/SZ/94/0 TSGIGY---QPYRVVVLSFELLNAPATVCGPKLSTDLIKNQ--CVNFNFNGLTGTGVLTP NC_009019_Bat-CoV-HKU4_B04f RVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQN NC_009020_Bat-CoV-HKU5_LMH3f IYPVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSIEDKLDVCVEYSLHGITGRGVFHN NC_009021_Bat-CoV-HKU9_BF_005I VYGLA-------VITLKPAAGSKLVCPV---ANDTVVITDR--CVQYNLYGYTGTGVLSK NC_001451_IBV_Beaudette_S_20368. GSRIQ----------------TATEPPVITQNNYNNITLNT--CVDYNIYGRTGQGFITN AY646283_IBV-partridge_Partridge GSRIQ----------------TATVPPVVTQHNYNNITLNT--CVDYNIYGRVGRGFITN AY641576_IBV-peafowl_Peafowl/GD/ GSRIQ----------------TATEPPVITRHNYNNITLNT--CVDYNIYGRTGQGFITN NC_007447_BoTV-1_Breda S--ILYTRLPESRRLTLGAQLTPFVQALLSFKQADIDATDVDTVARYNVLSLMWGRKYAA : : . NC_002645_HCoV-229E_inf-1_S_2057 S-----NDTFLN--GI-TYTSTSGNLLGFKD----------------VTKGTI----YSI NC_005831_HCoV-NL63_AmsterdamI_S S-----NQSLAG--GI-TYVSNSGNLLGFKN----------------VSTGNI----FIV NC_002306_TGEV_PUR46-MAD_S_20365 T-----NRTLLS--GL-YYTSLSGDLLGFKN----------------VSDGVI----YSV NC_003436_PEDV_CV777_S_20638..24 T-----NSSILA--GV-YYTSDSGQLLAFKN----------------VTSGAV----YSV DQ811787_PRCV_ISU-1_S_20345..240 T-----NRTLLS--GL-YYTSLSGDLLGFKN----------------VSDGVI----YSV AY994055_FIPV_79-1146_S_20436..2 T-----NSTLLS--GL-YYTSLSGDLLGFKN----------------VSDGVI----YSV NC_009657_BtCoV-G1_BtCoV/512/200 T-----NQTFLS--GV-YYTSESGQLLAFKN----------------VTTGQI----YSV EF203064_Bat-CoV-HKU2_HKU2/GD/43 S-----NFTFAQYYNV-LYFGS--QLKYVR------------------ILGKV----YEV NC_005147_HCoV-OC43_OC43_S_23644 V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YITNRT----FMI NC_006577_CoV-HKU1A_N1_S_22942.. V-----SAVYYNSWQN-LLYDSNGNIIGFKD----------------FVTNKT----YNI AY884001_CoV-HKU1B_N2_S_22862..2 V-----SAAYYNNWQN-LLYDSNGNIIGFKD----------------FLTNKT----YTI DQ339101_CoV-HKU1C_N5_S_22802..2 V-----SAAYYNNWQN-LLYDSNGNIIGFKD----------------FLTNKT----YTI NC_003045_BCoV_BCoV-ENT_S_23641. V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YLTNRT----FMI NC_001846_MHV_MHV-A59_S_23929..2 V-----KADYYNSWQT-LLYDVNGNLNGFRD----------------LTTNKT----YTI NC_007732_PHEV_VW572_S_23427..27 V-----NATYYNSWQN-LLYDSSGNLYGFRD----------------YLSNRT----FLI EF424621_AntelopeCoV_US/OH1/2003 V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YLTNRT----FMI EF424622_GiCoV_US/OH3-TC/2006_S_ V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YLTNRT----FMI NC_004718_SARS-human_Tor2_S_2149 S-----SKRFQPF-QQ-FGRDVSDFTDSVRD----------------PKTSEI----LDI AY304488_SARS-civet_SZ16_S_21477 S-----SKRFQP-FQQ-FGRDVSDITDSVRD----------------PKTSEI----LDI NC_009694_SARS-bat_HKU3-1_S_2147 S-----SKRFQSF-QQ-FGRDTSDFTDSVRD----------------PQTLEI----LDI AY545919_SARS-badger_CFB/SZ/94/0 S-----SKRFQPF-QQ-FGRDVSDFTDSVRD----------------PKTSEI----LDI NC_009019_Bat-CoV-HKU4_B04f C-----TAVGVKQ-QR-FVYDSFDNLVGYY-----------------SDDGNY----YCV NC_009020_Bat-CoV-HKU5_LMH3f C-----TSVGLR-NQR-FVYDTFDNLVGYH-----------------SDNGNY----YCV NC_009021_Bat-CoV-HKU9_BF_005I N-----TSLVIPDGKV-FTASSTGTIIGVS------------------INSTT----YSI NC_001451_IBV_Beaudette_S_20368. VTDSAVSYNYLADAGL-AILDTSGSIDIF------------------VVQGEYGLNYYKV AY646283_IBV-partridge_Partridge VTDSSSSYNYLADAGL-AVLDTSGAIDIF------------------VVQGEHGLNYYKV AY641576_IBV-peafowl_Peafowl/GD/ VTDSAVSYNYLADAGL-AILDTSGSIDIF------------------VVQGEYGLTYYKV NC_007447_BoTV-1_Breda V-----SYNQLPEWSYPLFKGGVGDSMWFRKEISCSSQNPSTPSHFPFIAGYLDFLDYKY . . NC_002645_HCoV-229E_inf-1_S_2057 TP------CNPPDQLVVY--------QQAVVGAMLSENFTSYGFSNVVELPKFFYAS--- NC_005831_HCoV-NL63_AmsterdamI_S TP------CNQPDQVAVY--------QQSIIGAMTAVNESRYGLQNLLQLPNFYYVS--- NC_002306_TGEV_PUR46-MAD_S_20365 TP------CDVSAQAAVI--------DGTIVGAITSINSELLGLTHWTTTPNFYYYSIY- NC_003436_PEDV_CV777_S_20638..24 TP------CSFSEQAAYV--------NDDIVGVISSLSNS--TFNNTRELPGFFYHS--- DQ811787_PRCV_ISU-1_S_20345..240 TP------CDVSAQAAVI--------DGTIVGAITSINSELLGLTHWTTTPNFYYYSIY- AY994055_FIPV_79-1146_S_20436..2 TP------CDVSAQAAVI--------DGAIVGAMTSINSELLGLTHWTTTPNFYYYSIY- NC_009657_BtCoV-G1_BtCoV/512/200 TP------CQLVQQVAFV--------EDRIVGVISSANNT-GFFNSTRTFPGFYYHS--- EF203064_Bat-CoV-HKU2_HKU2/GD/43 AP------CFEASYDVLF---RSSSSFGLLYRSFDCNQLR--------ISASRFAERLLP NC_005147_HCoV-OC43_OC43_S_23644 RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNSLTRQLQPINY------- NC_006577_CoV-HKU1A_N1_S_22942.. FP------CYAGRVSAAF--HQNASSLALLYRNLKCSYVL-----NNISLTTQPY----- AY884001_CoV-HKU1B_N2_S_22862..2 LP------CYSGRVSAAF--YQNSSSPALLYRNLKCSYVL----NNISFISQPFY----- DQ339101_CoV-HKU1C_N5_S_22802..2 LP------CYSGRVSAAF--YQNSSSPALLYRNLKCSYVL----NNISFISQPFY----- NC_003045_BCoV_BCoV-ENT_S_23641. RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNTLSRQLQPINY------- NC_001846_MHV_MHV-A59_S_23929..2 RS------CYSGRVSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPLNY------- NC_007732_PHEV_VW572_S_23427..27 RS------CYSGRVSAVF--HANSSEPALMFRNLKCSHVFNNTILRQIQLVNY------- EF424621_AntelopeCoV_US/OH1/2003 RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNTLSRQLQPINY------- EF424622_GiCoV_US/OH3-TC/2006_S_ RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNTLSRQLQPINY------- NC_004718_SARS-human_Tor2_S_2149 SP------CAFGGVSVITPGTNASSEVAVLYQDVNCTDVS-TAIHADQLTPA--WRIYST AY304488_SARS-civet_SZ16_S_21477 SP------CSFGGVSVITPGTNASSEVAVLYQDVNCTDVP-TAIHADQLTPA--WRIYST NC_009694_SARS-bat_HKU3-1_S_2147 SP------CSFGGVSVITPGTNASSEVAVLYQDVNCTDVP-TAIRADQLTPA--WRVYST AY545919_SARS-badger_CFB/SZ/94/0 SP------CSFGGVSVITPGTNASSEVAVLYQDVNCTDVS-TLIHAEQLTPA--WRIYST NC_009019_Bat-CoV-HKU4_B04f RP------CVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSN NC_009020_Bat-CoV-HKU5_LMH3f RP------CVSVPVSVIY--DKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTP NC_009021_Bat-CoV-HKU9_BF_005I MP------CVTVPVSVGY---HPNFERALLFNGLSCSQRS----RAVTEPVSVLWSASAT NC_001451_IBV_Beaudette_S_20368. NP------CEDVNQQFVV-------SGGKLVGILTSRNET-----GSQLLENQFYIKITN AY646283_IBV-partridge_Partridge NP------CEDVNQQFVV-------SGGKLVGILTSRNAT-----GSQPLENQFYIKLTK AY641576_IBV-peafowl_Peafowl/GD/ NP------CEDVNQQFVV-------SGGKLVGILTSRNET-----GSQLLENQFYIKITN NC_007447_BoTV-1_Breda IPKYKGVACPTTMVAPTL--LQVYETPQLFVIIVQCVSTT-YSWYPGLQTPHTIYRSYKL . * . . . NC_002645_HCoV-229E_inf-1_S_2057 --------------------------------NGTYNCTDAVLTYSSFGV---CADGS-- NC_005831_HCoV-NL63_AmsterdamI_S --------------------------------NGGNNCTTAVMTYSNFGI---CADGS-- NC_002306_TGEV_PUR46-MAD_S_20365 -------------------NYTNDRTRGTAIDSNDVDC-EPVITYSNIGV---CKNGA-- NC_003436_PEDV_CV777_S_20638..24 --------------------------------NDGSNCTEPVLVYSNIGV---CKSGS-- DQ811787_PRCV_ISU-1_S_20345..240 -------------------NYTNDRIRGTAIDSNDVDC-EPVITYSNIGV---CKNGA-- AY994055_FIPV_79-1146_S_20436..2 -------------------NYTSERTRGTAIDSNDVDC-EPVITYSNIGV---CKNGA-- NC_009657_BtCoV-G1_BtCoV/512/200 --------------------------------NDTTNCTSPRLVYSNIGV---CTSGA-- EF203064_Bat-CoV-HKU2_HKU2/GD/43 SHN----------------GTATALGCLFNATYAPNDTMVNCTNPLGDGF---CADLL-- NC_005147_HCoV-OC43_OC43_S_23644 --------------------FDSYLGCVVNAYNSTAISVQTCDLTVGSGY---CVDYS-- NC_006577_CoV-HKU1A_N1_S_22942.. --------------------FDSYLGCVFNADNLTDYSVSSCALRMGSGF---CVDYNSP AY884001_CoV-HKU1B_N2_S_22862..2 --------------------FDSYLGCVLNAVNLTSYSVSSCDLRMGSGF---CIDYA-- DQ339101_CoV-HKU1C_N5_S_22802..2 --------------------FDSYLGCVLNAVNLTSYSVSSCDLRMGSGF---CIDYA-- NC_003045_BCoV_BCoV-ENT_S_23641. --------------------FDSYLGCVVNADNSTSSVVQTCDLTVGSGY---CVDYS-- NC_001846_MHV_MHV-A59_S_23929..2 --------------------FDSYLGCVVNADNRTDEALPNCDLRMGAGL---CVDYS-- NC_007732_PHEV_VW572_S_23427..27 --------------------FDSYLGCVVNAYNNTASAVSTCDLTVGSGY---CVDYV-- EF424621_AntelopeCoV_US/OH1/2003 --------------------FDSYLGCVVNADNSTSSVVQTCDLTVGSGY---CVDYS-- EF424622_GiCoV_US/OH3-TC/2006_S_ --------------------FDSYLGCVVNADNSTSSVVQTCDLTVGSGY---CVDYS-- NC_004718_SARS-human_Tor2_S_2149 GNN----------------VFQTQAGCLIGAEHVDTSY--ECDIPIGAGI---CASYH-- AY304488_SARS-civet_SZ16_S_21477 GNN----------------VFQTQAGCLIGAEHVDTSY--ECDIPIGAGI---CASYH-- NC_009694_SARS-bat_HKU3-1_S_2147 GVN----------------VFQTQAGCLIGAEHVNASY--ECDIPIGAGI---CASYH-- AY545919_SARS-badger_CFB/SZ/94/0 GNN----------------VFQTQAGCLIGAEHVDTSY--ECDIPIGAGI---CASYH-- NC_009019_Bat-CoV-HKU4_B04f I------------------PLQTAVGCVIGLSNN-SLVVSDCKLPLGQSL---CAVPP-- NC_009020_Bat-CoV-HKU5_LMH3f G------------------PLQTTVGCAMGFINS-SMVVDECQLPLGQSL---CAIPP-- NC_009021_Bat-CoV-HKU9_BF_005I AQD----------------AFDTPSGCVVNVELRNTTIVNTCAMPIGNSL---CFING-- NC_001451_IBV_Beaudette_S_20368. GTR----------------RFRRSI----------TENVANCPYVSYGKF---CIKPD-- AY646283_IBV-partridge_Partridge ETR----------------RFRRST----------SDNVTSCPYVSYGRF---CIQPD-- AY641576_IBV-peafowl_Peafowl/GD/ GTR----------------RFRRSI----------TENVANCPYVSYGKF---CIKPD-- NC_007447_BoTV-1_Breda GTICVLVPYSSPTSVYSSFGFFSQSALTIPTVQTTDDILPGCVGFVQDGVFTPCHPSGCP * NC_002645_HCoV-229E_inf-1_S_2057 -----------------IIAVQPRNVSY---DSVSAIVTA--NLSIPS------------ NC_005831_HCoV-NL63_AmsterdamI_S -------------------LIPVRPRNS-SDNGISAIITA--NLSIPS------------ NC_002306_TGEV_PUR46-MAD_S_20365 --------------------FVFINVTH-SDGDVQPISTG--NVTIPT------------ NC_003436_PEDV_CV777_S_20638..24 --------------------IGYVPSQY-GQVKIAPTVTG--NISIPT------------ DQ811787_PRCV_ISU-1_S_20345..240 --------------------LVFINVTH-SDGDVQPISTG--NVTIPT------------ AY994055_FIPV_79-1146_S_20436..2 --------------------LVFINVTH-SDGDVQPISTG--NVTIPT------------ NC_009657_BtCoV-G1_BtCoV/512/200 --------------------IGLLSPKA-AQPQVQPMFQG--NISIPT------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 -----------SNVVVRRMTFEKHDTTY-----VAPVTNERFT-ELPL------------ NC_005147_HCoV-OC43_OC43_S_23644 ---KNRRSRGAITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------ NC_006577_CoV-HKU1A_N1_S_22942.. SSSSSRRKRRSISASYRFVTFEPFNVSF-VNDSIESVGGL-YEIKIPT------------ AY884001_CoV-HKU1B_N2_S_22862..2 -LPSSRRKRRGISSPYRFVTFEPFNVSF-VNDSVETVGGL-FEIQIPT------------ DQ339101_CoV-HKU1C_N5_S_22802..2 -LPSSRRKRRGISSPYRFVTFEPFNVSF-VNDSVETVGGL-FEIQIPT------------ NC_003045_BCoV_BCoV-ENT_S_23641. ---TKRRSRRSITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------ NC_001846_MHV_MHV-A59_S_23929..2 ---KSRRADRSVSTGYRLTTFEPYTPML-VNDSVQSVDGL-YEMQIPT------------ NC_007732_PHEV_VW572_S_23427..27 ---TALRSRRSFTTGYRFTNFEPFAVNL-VNDSIEPVGGL-YEIQIPS------------ EF424621_AntelopeCoV_US/OH1/2003 ---TKRRSRRSITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------ EF424622_GiCoV_US/OH3-TC/2006_S_ ---TKRRSRRSITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------ NC_004718_SARS-human_Tor2_S_2149 --------TVSLLRSTSQKSIVAYTMSL-GADSSIAYSNN--TIAIPT------------ AY304488_SARS-civet_SZ16_S_21477 --------TVSSLRSTSQKSIVAYTMSL-GADSSIAYSNN--TIAIPT------------ NC_009694_SARS-bat_HKU3-1_S_2147 --------TASVLRSTGQKSIVAYTMSL-GAENSIAYANN--SIAIPT------------ AY545919_SARS-badger_CFB/SZ/94/0 --------TVSSLRSTSQKSIVAYTMSL-GADSSIAYSNN--TIAIPT------------ NC_009019_Bat-CoV-HKU4_B04f ---------VSTFRSYSASQFQLAVLNYTSPIVVTPINSSGFTAAIPT------------ NC_009020_Bat-CoV-HKU5_LMH3f ----TTSSRVRRATSGASDVFQIATLNFTSPLTLAPINSTGFVVAVPT------------ NC_009021_Bat-CoV-HKU9_BF_005I ------SIATANADSLPRLQLVNYDPLY-DNSTATPMTPV-YWVKVPT------------ NC_001451_IBV_Beaudette_S_20368. ------------------GSIATIVPKQ-LEQFVAPLFNVTENVLIPN------------ AY646283_IBV-partridge_Partridge ------------------GSIKQIVPQE-LENFVAPLLNVTENVLIPS------------ AY641576_IBV-peafowl_Peafowl/GD/ ------------------GSIATIVPKQ-LEQFVAPLLNVTENVLIPN------------ NC_007447_BoTV-1_Breda VRNSYDNYIICPGSSASNYTLRNYHRTT-IPVMNVPIDEVPLQLEIPTVSLTSYELKQSE . . :* NC_002645_HCoV-229E_inf-1_S_2057 ------------------------------NWTTSVQVEY------LQITSTPIVVDCST NC_005831_HCoV-NL63_AmsterdamI_S ------------------------------NWTTSVQVEY------LQITSTPIVVDCAT NC_002306_TGEV_PUR46-MAD_S_20365 ------------------------------NFTISVQVEY------IQVYTTPVSIDCSR NC_003436_PEDV_CV777_S_20638..24 ------------------------------NFSMSIRTEY------LQLYNTPVSVDCAT DQ811787_PRCV_ISU-1_S_20345..240 ------------------------------NFTISVQVEY------IQVYTTPVSIDCSR AY994055_FIPV_79-1146_S_20436..2 ------------------------------NFTISVQVEY------MQVYTTPVSIDCAR NC_009657_BtCoV-G1_BtCoV/512/200 ------------------------------NFTMSVRTEY------IQLFNKPVSVDCAM EF203064_Bat-CoV-HKU2_HKU2/GD/43 ------------------------------DHQLVLTEQF------LQTTMPKFSISCET NC_005147_HCoV-OC43_OC43_S_23644 ------------------------------EFTIGNMEEF------IQTSSPKVTIDCAA NC_006577_CoV-HKU1A_N1_S_22942.. ------------------------------NFTIVGQEEF------IQTNSPKVTIDCSL AY884001_CoV-HKU1B_N2_S_22862..2 ------------------------------NFTIAGHEEF------IQTSSPKVTIDCSA DQ339101_CoV-HKU1C_N5_S_22802..2 ------------------------------NFTIAGHEEF------IQTSSPKVTIDCSA NC_003045_BCoV_BCoV-ENT_S_23641. ------------------------------EFTIGNMEEF------IQTSSPKVTIDCSA NC_001846_MHV_MHV-A59_S_23929..2 ------------------------------NFTIGHHEEF------IQTRSPKVTIDCAA NC_007732_PHEV_VW572_S_23427..27 ------------------------------EFTIGNLEEF------IQTSSPKVTIDCAT EF424621_AntelopeCoV_US/OH1/2003 ------------------------------EFTIGNMEEF------IQTSSPKVTIDCSA EF424622_GiCoV_US/OH3-TC/2006_S_ ------------------------------EFTIGNMEEF------IQTSSPKVTIDCSA NC_004718_SARS-human_Tor2_S_2149 ------------------------------NFSISITTEV------MPVSMAKTSVDCNM AY304488_SARS-civet_SZ16_S_21477 ------------------------------NFLISITTEV------MPVSMAKTSVDCNM NC_009694_SARS-bat_HKU3-1_S_2147 ------------------------------NFSISVTTEV------MPVSMAKTAVDCTM AY545919_SARS-badger_CFB/SZ/94/0 ------------------------------NFSISITTEV------MPVSMAKTSVDCNM NC_009019_Bat-CoV-HKU4_B04f ------------------------------NFSFSVTQEY------IETSIQKVTVDCKQ NC_009020_Bat-CoV-HKU5_LMH3f ------------------------------NFTFGVTQEF------IETTIQKITVDCKQ NC_009021_Bat-CoV-HKU9_BF_005I ------------------------------NFTLSATEEY------IQTTAPKITIDCAR NC_001451_IBV_Beaudette_S_20368. ------------------------------SFNLTVTDEY------IQTRMDKVQINCLQ AY646283_IBV-partridge_Partridge ------------------------------SFNLTVTDEY------IQTRMDKVQINCLQ AY641576_IBV-peafowl_Peafowl/GD/ ------------------------------SFNLTVTDEY------IQTRMDKVQINCLQ NC_007447_BoTV-1_Breda SVLLQDIEGGIVVDHNTGSIWYPGGQAYDVSFYVSVIIRYAPPKLELPSTLANFT-SCLD . : .* NC_002645_HCoV-229E_inf-1_S_2057 YVCNGNVRCVELLKQYTSACKTIEDALRNSARLESADVS----EMLTFDK--KAFTLANV NC_005831_HCoV-NL63_AmsterdamI_S YVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVS----SMLTFDS--NAFSLANV NC_002306_TGEV_PUR46-MAD_S_20365 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVD----SMLFVSE--NALKLASV NC_003436_PEDV_CV777_S_20638..24 YVCNGNSRCKQLLTQYTAACKTIESALQLSARLESVEVN----SMLTISE--EALQLATI DQ811787_PRCV_ISU-1_S_20345..240 YVCNGNPRCNKLLTQYVSACQTIEQALAMSARLENMEVD----SMLFVSE--NALKLASV AY994055_FIPV_79-1146_S_20436..2 YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVD----SMLFVSE--NALKLASV NC_009657_BtCoV-G1_BtCoV/512/200 YVCNGNDRCKQLLSQYTSACKNIESALQLSARLESMEVN----SMLTVSD--EALKLATI EF203064_Bat-CoV-HKU2_HKU2/GD/43 YICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVS----GLYSTIAAKTSSITPTT NC_005147_HCoV-OC43_OC43_S_23644 FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG NC_006577_CoV-HKU1A_N1_S_22942.. FVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVT--LSSNLNTN AY884001_CoV-HKU1B_N2_S_22862..2 FVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVT--LSSNLNTN DQ339101_CoV-HKU1C_N5_S_22802..2 FVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVT--LSSNLNTN NC_003045_BCoV_BCoV-ENT_S_23641. FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG NC_001846_MHV_MHV-A59_S_23929..2 FVCGDNTACRQQLVEYGSFCVNVNAILNEVNNLLDNMQLQVASALMQGVT--ISSRLPDG NC_007732_PHEV_VW572_S_23427..27 FVCGDYAACRQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVT--LSTKIKDG EF424621_AntelopeCoV_US/OH1/2003 FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG EF424622_GiCoV_US/OH3-TC/2006_S_ FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG NC_004718_SARS-human_Tor2_S_2149 YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTR----EVFAQVK--QMYKTPTL AY304488_SARS-civet_SZ16_S_21477 YICGDSTECANLLLQYGSFCAQLNRALSGIAVEQDRNTR----EVFAQVK--QMYKTPTL NC_009694_SARS-bat_HKU3-1_S_2147 YICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQ----EVFAQVK--QMYKTPAI AY545919_SARS-badger_CFB/SZ/94/0 YICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTR----EVFVQVK--QMYKTPTL NC_009019_Bat-CoV-HKU4_B04f YVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVY----SLYSNIK--TTSTQTLE NC_009020_Bat-CoV-HKU5_LMH3f YVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIA----NLFSSIK--TQNTQPLQ NC_009021_Bat-CoV-HKU9_BF_005I YLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDSALL----SLVKELSI-NTRDEVTT NC_001451_IBV_Beaudette_S_20368. YVCGSSLDCRKLFQQYGPVCDNILSVVNSVGQKEDMELL----NFYSSTKP-AGFNTPVL AY646283_IBV-partridge_Partridge YVCGNPLDCRKLFQQYGPVCDNILSIVNSVGQKEDMELL----TFYSSTKP-AGYNAPVF AY641576_IBV-peafowl_Peafowl/GD/ YVCGNSLDCRDLFRQYGHVCDNILSVVNSIGQKEDMELL----NFYSSTKP-VGFNTPFL NC_007447_BoTV-1_Breda YICFGNQQCRGEAQTFCTSMDYFEQVFNKSLTSLIIALQ----DLHYVLK--LVLPETTL ::* * : . . . NC_002645_HCoV-229E_inf-1_S_2057 SSF----------GDY-N-----LSSVIPSL---PTSG-------SRVAGRSAIEDILFS NC_005831_HCoV-NL63_AmsterdamI_S TSF----------GDY-N-----LSSVLPQR---NIRS-------SRIAGRSALEDLLFS NC_002306_TGEV_PUR46-MAD_S_20365 EAFNSSETLDPIYKEWPNIGGSWLEGLKYIL---PSHN-------SKRKYRSAIEDLLFD NC_003436_PEDV_CV777_S_20638..24 SSFNG--------DGY-N-----FTNVLGASVYDPASG-------RVVQKRSVIEDLLFN DQ811787_PRCV_ISU-1_S_20345..240 EAFNSSETLDPIYKDWPNIGGSWLEGLKYIL---PSDN-------SKRQYRSAIEDLLFS AY994055_FIPV_79-1146_S_20436..2 EAFNSTENLDPIYKEWPSIGGSWLGGLKDIL---PSHN-------SKRKYGSAIEDLLFD NC_009657_BtCoV-G1_BtCoV/512/200 SQFPG--------GGY-N-----FTNILPAN---PGA-------------RSVIEDILFD EF203064_Bat-CoV-HKU2_HKU2/GD/43 DRFNV--------SQF----------FLPKV---QSNS-------ERFESRSVIEDLLFS NC_005147_HCoV-OC43_OC43_S_23644 VNFNV--------DDI-N-----FSPVLGCL---GSEC-------SKASSRSAIEDLLFD NC_006577_CoV-HKU1A_N1_S_22942.. LHFDV--------DNI-N-----FKSLVGCL---GPHC-------GSSS-RSFFEDLLFD AY884001_CoV-HKU1B_N2_S_22862..2 LHSDV--------DNI-D-----FKSLLGCL---GSQC-------GSSS-RSLLEDLLFN DQ339101_CoV-HKU1C_N5_S_22802..2 LHSDV--------DNI-D-----FKSLLGCL---GSQC-------GSSS-RSLLEDLLFN NC_003045_BCoV_BCoV-ENT_S_23641. VNFNV--------DDI-N-----FSPVLGCL---GSDC-------NKVSSRSAIEDLLFS NC_001846_MHV_MHV-A59_S_23929..2 ISGPI--------DDI-N-----FSPLLGCI---GSTCAEDGNGPSAIRGRSAIEDLLFD NC_007732_PHEV_VW572_S_23427..27 INFNV--------DDI-N-----FSPVLGCL---GSEC-------NRASTRSAIEDLLFD EF424621_AntelopeCoV_US/OH1/2003 VNFNV--------DDI-N-----FSPVLGCL---GSDC-------NKVSSRSAIEDLLFS EF424622_GiCoV_US/OH3-TC/2006_S_ VNFNV--------DDI-N-----FSPVLGCL---GSDC-------NKVSSRSAIEDLLFS NC_004718_SARS-human_Tor2_S_2149 KYF----------GGF-N-----FSQILPDP---LKPT-------K----RSFIEDLLFN AY304488_SARS-civet_SZ16_S_21477 KDF----------GGF-N-----FSQILPDP---LKPT-------K----RSFIEDLLFN NC_009694_SARS-bat_HKU3-1_S_2147 KDF----------GGF-N-----FSQILPDP---SKPT-------K----RSFIEDLLFN AY545919_SARS-badger_CFB/SZ/94/0 KDF----------GGF-N-----FSQILPDP---LKPT-------K----RSFIEDLLFN NC_009019_Bat-CoV-HKU4_B04f YGLN---------GDF-N-----LT-LLQVP---QIGG-------SSSSYRSAIEDLLFD NC_009020_Bat-CoV-HKU5_LMH3f AGLN---------GDF-N-----LT-MLQIP---QVTT-------GERKYRSTIEDLLFN NC_009021_Bat-CoV-HKU9_BF_005I FSFD---------GDY-N-----FTGLMGCL---GPNC-------GATTYRSAFSDLLYD NC_001451_IBV_Beaudette_S_20368. SNVST--------GEF-N-----ISLLLTNP---SSRR-------K----RSLIEDLLFT AY646283_IBV-partridge_Partridge SNIST--------GDF-N-----ISLLLTPP---SSPS-------G----RSFIEDLLFT AY641576_IBV-peafowl_Peafowl/GD/ SNVST--------GEF-N-----ISLLLTTP---SSPR-------R----RSFIEDLLFT NC_007447_BoTV-1_Breda ELTEDTRRRRRAVDEFSD-----TISLLSES---FERF-------MSPASQAYMANMMWW . : : :::: NC_002645_HCoV-229E_inf-1_S_2057 KLVTSGLGTVDADYKKCT---KGL--SIADLACAQYYNGIMVLPGVAD------------ NC_005831_HCoV-NL63_AmsterdamI_S KVVTSGLGTVDVDYKSCT---KGL--SIADLACAQYYNGIMVLPGVAD------------ NC_002306_TGEV_PUR46-MAD_S_20365 KVVTSGLGTVDEDYKRCT---GGY--DIADLVCAQYYNGIMVLPGVAN------------ NC_003436_PEDV_CV777_S_20638..24 KVVTNGLGTVDEDYKRCS---NGR--SVADLVCAQYYSGVMVLPGVVD------------ DQ811787_PRCV_ISU-1_S_20345..240 KVVTSGLGTVDEDYKRCT---GGY--DIADLVCAQYYNGIMVLPGVAN------------ AY994055_FIPV_79-1146_S_20436..2 KVVTSGLGTVDEDYKRCT---GGY--DIADLVCAQYYNGIMVLPGVAN------------ NC_009657_BtCoV-G1_BtCoV/512/200 KVVTSGLGTVDEDYKRCS---NGL--SIADLACAQHYNGIMVLPGVAD------------ EF203064_Bat-CoV-HKU2_HKU2/GD/43 KIETTGPGFYGD-YYNCK---KN---AIQDLTCAQYHNGILVIPPVMD------------ NC_005147_HCoV-OC43_OC43_S_23644 KVKLSDVGFVEA-YNNCT---GGA--EIRDLICVQSYKGIKVLPPLLS------------ NC_006577_CoV-HKU1A_N1_S_22942.. KVKLSDVGFVEA-YNNCT---GGS--EIRDLLCVQSFNGIKVLPPILS------------ AY884001_CoV-HKU1B_N2_S_22862..2 KVKLSDVGFVEA-YNNCT---GGS--EIRDLLCVQSFNGIKVLPPILS------------ DQ339101_CoV-HKU1C_N5_S_22802..2 KVKLSDVGFVEA-YNNCT---GGS--EIRDLLCVQSFNGIKVLPPILS------------ NC_003045_BCoV_BCoV-ENT_S_23641. KVKLSDVGFVEA-YNNCT---GGA--EIRDLICVQSYNGIKVLPPLLS------------ NC_001846_MHV_MHV-A59_S_23929..2 KVKLSDVGFVEA-YNNCT---GGQ--EVRDLLCVQSFNGIKVLPPVLS------------ NC_007732_PHEV_VW572_S_23427..27 KVKLSDVGFVQA-YNNCT---GGA--EIRDLICVQSYNGIKVLPPLLS------------ EF424621_AntelopeCoV_US/OH1/2003 KVKLSDVGFVEA-YNNCT---GGA--EIRDLICVQSYNGIKVLPPLLS------------ EF424622_GiCoV_US/OH3-TC/2006_S_ KVKLSDVGFVEA-YNNCT---GGV--EIRDLICVQSYNGIKVLPPLLS------------ NC_004718_SARS-human_Tor2_S_2149 KVTLADAGFMKQ-YGECL---GDI--NARDLICAQKFNGLTVLPPLLT------------ AY304488_SARS-civet_SZ16_S_21477 KVTLADAGFMKQ-YGECL---GDI--NARDLICAQKFNGLTVLPPLLT------------ NC_009694_SARS-bat_HKU3-1_S_2147 KVTLADAGFMKQ-YGDCL---GDV--SARDLICAQKFNGLTVLPPLLT------------ AY545919_SARS-badger_CFB/SZ/94/0 KVTLADAGFMKQ-YGECL---GDI--NARDLICAQKFNGLTVLPPLLT------------ NC_009019_Bat-CoV-HKU4_B04f KVTIADPGYMQG-YDDCMK-QGPQ--SARDLICAQYVSGYKVLPPLYD------------ NC_009020_Bat-CoV-HKU5_LMH3f KVTIADPGYMQG-YDECMQ-QGPQ--SARDLICAQYVAGYKVLPPLYD------------ NC_009021_Bat-CoV-HKU9_BF_005I KVRITDPGFMQS-YQKCIDSQWGG--SIRDLLCTQTYNGIAVLPPIVS------------ NC_001451_IBV_Beaudette_S_20368. SVESVGLPTNDA-YKNCT---AGPLGFFKDLACAREYNGLLVLPPIIT------------ AY646283_IBV-partridge_Partridge SVETVGLPTDAE-YKKCT---AGPLGTLKDLICAREYNGLLVLPPIIT------------ AY641576_IBV-peafowl_Peafowl/GD/ SVESVGLPTDDA-YKNCT---AGPLGFLKDLACAREYNGLLVLPPIIT------------ NC_007447_BoTV-1_Breda DEAFDGISLPQR-----T---GSILSRTPSLSSTSSWRSYSSRTPLISNVKTPKTTFNVK . . .* .. . . : NC_002645_HCoV-229E_inf-1_S_2057 ---AERMAMYTGSLIGGIALGGLTSAV-S----IPFSLAIQARL------------NYVA NC_005831_HCoV-NL63_AmsterdamI_S ---AERMAMYTGSLIGGMVLGGLTSAA-A----IPFSLALQARL------------NYVA NC_002306_TGEV_PUR46-MAD_S_20365 ---ADKMTMYTASLAGGITLGALGGGAVA----IPFAVAVQARL------------NYVA NC_003436_PEDV_CV777_S_20638..24 ---AEKLHMYSASLIGGMALGGITAAA-A----LPFSYAVQARL------------NYLA DQ811787_PRCV_ISU-1_S_20345..240 ---ADKMTMYTASLAGGITLGALGGGAVA----IPFAVAVQARL------------NYVA AY994055_FIPV_79-1146_S_20436..2 ---ADKMTMYTASLAGGITLGALGGGAVA----IPFAVAVQARL------------NYVA NC_009657_BtCoV-G1_BtCoV/512/200 ---WEKVHMYSASLVGGMTLGGITSAA-A----LPFSYAVQARL------------NYVA EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---AETLGMYGGIAAASLTLGIFGGQA-G---ITTWSLAMAGRL------------NALG NC_005147_HCoV-OC43_OC43_S_23644 ---ENQISGYTLAATSASLFPLWTAAA-G----VPFYLNVQYRI------------NGLG NC_006577_CoV-HKU1A_N1_S_22942.. ---ESQISGYTTAATVAAMFPPWSAAA-G----IPFSLNVQYRI------------NGLG AY884001_CoV-HKU1B_N2_S_22862..2 ---ETQISGYTTAATVAAMFPPWSAAA-G----VPFSLNVQYRI------------NGLG DQ339101_CoV-HKU1C_N5_S_22802..2 ---ETQISGYTTAATVAAMFPPWSAAA-G----VPFSLNVQYRI------------NGLG NC_003045_BCoV_BCoV-ENT_S_23641. ---ENQISGYTLAATSASLFPPWSAAA-G----VPFYLNVQYRI------------NGIG NC_001846_MHV_MHV-A59_S_23929..2 ---ESQISGYTTGATAAAMFPPWSAAA-G----VPFSLSVQYRI------------NGLG NC_007732_PHEV_VW572_S_23427..27 ---ENQISGYTLAATAASLFPPWTAAA-G----VPFYLNVQYRI------------NGLG EF424621_AntelopeCoV_US/OH1/2003 ---ENQISGYTLAATSASLFPPWSAAA-G----VPFYLNVQYRI------------NGIG EF424622_GiCoV_US/OH3-TC/2006_S_ ---ENQISGYTLAATSASLFPPWSAAA-G----VPFYLNVQYRI------------NGIG NC_004718_SARS-human_Tor2_S_2149 ---DDMIAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG AY304488_SARS-civet_SZ16_S_21477 ---DDMIAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG NC_009694_SARS-bat_HKU3-1_S_2147 ---DEMVAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG AY545919_SARS-badger_CFB/SZ/94/0 ---DDMIAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG NC_009019_Bat-CoV-HKU4_B04f ---PNMEAAYTSSLLGSIAGAGWTAGL-SSFAAIPFAQSMFYRL------------NGVG NC_009020_Bat-CoV-HKU5_LMH3f ---PYMEAAYTSSLLGSIAGASWTAGL-SSFAAIPFAQSIFYRL------------NGVG NC_009021_Bat-CoV-HKU9_BF_005I ---PAMQALYTSLLVGAVASSGYTFGI-TSAGVIPFATQLQFRL------------NGIG NC_001451_IBV_Beaudette_S_20368. ---AEMQALYTSSLVASMAFGGITAAG-A----IPFATQLQARI------------NHLG AY646283_IBV-partridge_Partridge ---ADMQTMYTASLVGAMAFGGITAAG-A----IPFATQIQARI------------NHLG AY641576_IBV-peafowl_Peafowl/GD/ ---AEMQTLYTSSLVASMAFGGITAAG-A----IPFATQLQARI------------NHLG NC_007447_BoTV-1_Breda LSMPKLPKASTLSTIGSVLSSGLSIASLG---LSIFSIIEDRRVTELTQQQIMALENQIT . : *. * : NC_002645_HCoV-229E_inf-1_S_2057 LQTDVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNK---IQDVVN NC_005831_HCoV-NL63_AmsterdamI_S LQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTIALNK---IQDVVN NC_002306_TGEV_PUR46-MAD_S_20365 LQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAK---VQDVVN NC_003436_PEDV_CV777_S_20638..24 LQTDVLQRNQQLLAESFNSAIGNITSAFESVKEAISQTSKGLNTVAHALTK---VQEVVN DQ811787_PRCV_ISU-1_S_20345..240 LQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAK---VQDVVN AY994055_FIPV_79-1146_S_20436..2 LQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAK---VQDVVN NC_009657_BtCoV-G1_BtCoV/512/200 LQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQTSAGLNTVAEALSK---VQDVVN EF203064_Bat-CoV-HKU2_HKU2/GD/43 VVQNALVDDVNKLANGFNQLTASV--------------GKLALTTSSALQA---IQAVVN NC_005147_HCoV-OC43_OC43_S_23644 VTMDVLSQNQKLIANAFNNALYAI--------------QEGFDATNSALVK---IQAVVN NC_006577_CoV-HKU1A_N1_S_22942.. VTMDVLNKNQKLIATAFNNALLSI--------------QNGFSATNSALAK---IQSVVN AY884001_CoV-HKU1B_N2_S_22862..2 VTMDVLNKNQKLIANAFNKALLSI--------------QNGFTATNSALAK---IQSVVN DQ339101_CoV-HKU1C_N5_S_22802..2 VTMDVLNKNQKLIANAFNKALLSI--------------QNGFTATNSALAK---IQSVVN NC_003045_BCoV_BCoV-ENT_S_23641. VTMDVLSQNQKLIANAFNNALGAI--------------QEGFDATNSALVK---IQAVVN NC_001846_MHV_MHV-A59_S_23929..2 VTMNVLSENQKMIASAFNNALGAI--------------QDGFDATNSALGK---IQSVVN NC_007732_PHEV_VW572_S_23427..27 VTMDVLSQNQKLIASAFNNALDAI--------------QEGFDATNSALVK---IQSVVN EF424621_AntelopeCoV_US/OH1/2003 VTMDVLSQNQKLIANAFNNALGAI--------------QEGFDATNSALVK---IQAVVN EF424622_GiCoV_US/OH3-TC/2006_S_ VTMDVLSQNQKLIANAFNNALGAI--------------QEGFDATNSALVK---IQAVVN NC_004718_SARS-human_Tor2_S_2149 VTQNVLYENQKQIANQFNKAISQI--------------QESLTTTSTALGK---LQDVVN AY304488_SARS-civet_SZ16_S_21477 VAQNVLYENQKQIANQFNKAISQI--------------QESLTTTSTALGK---LQDVVN NC_009694_SARS-bat_HKU3-1_S_2147 VTQNVLYENQKLIANQFNSAIGKI--------------QESLSSTASALGK---LQDVVN AY545919_SARS-badger_CFB/SZ/94/0 VTQNVLYENQKQIANQFNKAISQI--------------QESLTTTSTALGK---LQDVVN NC_009019_Bat-CoV-HKU4_B04f ITQQVLSENQKLIANKFNQALGAM--------------QTGFTTSNLAFSK---VQDAVN NC_009020_Bat-CoV-HKU5_LMH3f ITQQVLSENQKIIANKFNQALGAM--------------QTGFTTTNLAFNK---VQDAVN NC_009021_Bat-CoV-HKU9_BF_005I VTTQVLVENQKLIASSFNNALVNI--------------QKGFTETSIALSK---MQDVIN NC_001451_IBV_Beaudette_S_20368. ITQSLLLKNQEKIAASFNKAIGHM--------------QEGFRSTSLALQQ---IQDVVS AY646283_IBV-partridge_Partridge ITQSLLLKNQEKIAASFNKAIGHM--------------QEGFRSTSLALQQ---VQDVVN AY641576_IBV-peafowl_Peafowl/GD/ ITQSLLLKNQEKIAASFNKAIGRM--------------QEGFRSTSLALQQ---IQDVVN NC_007447_BoTV-1_Breda ILTDYTEKNFKEIQSSLNTLGQQVQDFSQQVTLSLQQLSNGLEQITQQLDKSIYYVMAVQ : . : : : :* : : .:. NC_002645_HCoV-229E_inf-1_S_2057 QQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDTIQADQ---------------QVDRLIT NC_005831_HCoV-NL63_AmsterdamI_S QQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQ---------------QVDRLIT NC_002306_TGEV_PUR46-MAD_S_20365 IQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADA---------------QVDRLIT NC_003436_PEDV_CV777_S_20638..24 SQGSALNQLTVQLQHNFQAISSSIDDIYSRLDILSADV---------------QVDRLIT DQ811787_PRCV_ISU-1_S_20345..240 TQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADA---------------QVDRLIT AY994055_FIPV_79-1146_S_20436..2 TQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADA---------------QVDRLIT NC_009657_BtCoV-G1_BtCoV/512/200 GQGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADA---------------QVDRLIT EF203064_Bat-CoV-HKU2_HKU2/GD/43 QNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADV---------------QMDRLIN NC_005147_HCoV-OC43_OC43_S_23644 ANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAEA---------------QIDRLIN NC_006577_CoV-HKU1A_N1_S_22942.. SNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQV---------------QIDRLIN AY884001_CoV-HKU1B_N2_S_22862..2 ANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQV---------------QIDRLIN DQ339101_CoV-HKU1C_N5_S_22802..2 ANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQV---------------QIDRLIN NC_003045_BCoV_BCoV-ENT_S_23641. ANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQA---------------QIDRLIN NC_001846_MHV_MHV-A59_S_23929..2 ANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKA---------------QIDRLIN NC_007732_PHEV_VW572_S_23427..27 ANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKA---------------QIDRLIN EF424621_AntelopeCoV_US/OH1/2003 ANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQA---------------QIDRLIN EF424622_GiCoV_US/OH3-TC/2006_S_ ANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQA---------------QIDRLIN NC_004718_SARS-human_Tor2_S_2149 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT AY304488_SARS-civet_SZ16_S_21477 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT NC_009694_SARS-bat_HKU3-1_S_2147 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT AY545919_SARS-badger_CFB/SZ/94/0 QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT NC_009019_Bat-CoV-HKU4_B04f ANAQALSKLASELSNTFGAISSSISDILARLDTVEQDA---------------QIDRLIN NC_009020_Bat-CoV-HKU5_LMH3f ANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEA---------------QIDRLIN NC_009021_Bat-CoV-HKU9_BF_005I QHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANA---------------EVDRLIN NC_001451_IBV_Beaudette_S_20368. KQSAILTETMASLNKNFGAISSVIQEIYQQFDAIQANA---------------QVDRLIT AY646283_IBV-partridge_Partridge KQSAILTETMNSLNKNFGAISSVIQDIYAQLDAIQADA---------------QVDRLIT AY641576_IBV-peafowl_Peafowl/GD/ KQSAILTETMASLNKNFGAISSMIQEIYQQLDAIQANA---------------QVDRLIT NC_007447_BoTV-1_Breda QYATYMSSLVNQLNELSQAVYKTQDMYITCIHSLQSGVLSPNCITPSQMFHLYQVAKNLS . : : *: : : :: . :. NC_002645_HCoV-229E_inf-1_S_2057 GRLAA------LNVFVSHTLTKYTEVRA-------SRQLAQQKVNECVKSQSKRYGFCG- NC_005831_HCoV-NL63_AmsterdamI_S GRLAA------LNAFVSQVLNKYTEVRG-------SRRLAQQKINECVKSQSNRYGFCG- NC_002306_TGEV_PUR46-MAD_S_20365 GRLTA------LNAFVSQTLTRQAEVRA-------SRQLAKDKVNECVRSQSQRFGFCG- NC_003436_PEDV_CV777_S_20638..24 GRLSA------LNAFVAQTLTKYTEVQA-------SRKLAQQKVNECVKSQSQRYGFCGG DQ811787_PRCV_ISU-1_S_20345..240 GRLTA------LNAFVSQTLTRQAEVRA-------SRQLAKDKVNECVRSQSQRFGFCG- AY994055_FIPV_79-1146_S_20436..2 GRLTA------LNAFVSQTLTRQAEVRA-------SRQLAKDKVNECVRSQSQRFGFCG- NC_009657_BtCoV-G1_BtCoV/512/200 GRLAA------LNAFVAQSLTKYAEVQA-------SRTLAKQKVNECVKSQSPRYGFCGD EF203064_Bat-CoV-HKU2_HKU2/GD/43 GRMNV------LQLFVTNYKLKIAELRN-------THRYVQSLINECVYAQSLRNGFCG- NC_005147_HCoV-OC43_OC43_S_23644 GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG- NC_006577_CoV-HKU1A_N1_S_22942.. GRLTA------LNAYVSQQLSDISLVKF-------GAALAMEKVNECVKSQSPRINFCG- AY884001_CoV-HKU1B_N2_S_22862..2 GRLTA------LNAYVSQQLSDITLIKA-------GASRAIEKVNECVKSQSPRINFCG- DQ339101_CoV-HKU1C_N5_S_22802..2 GRLTA------LNAYVSQQLSDITLIKA-------GASRAIEKVNECVKSQSPRINFCG- NC_003045_BCoV_BCoV-ENT_S_23641. GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG- NC_001846_MHV_MHV-A59_S_23929..2 GRLTA------LNAYISKQLSDSTLIKV-------SAAQAIEKVNECVKSQTTRINFCG- NC_007732_PHEV_VW572_S_23427..27 GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG- EF424621_AntelopeCoV_US/OH1/2003 GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG- EF424622_GiCoV_US/OH3-TC/2006_S_ GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG- NC_004718_SARS-human_Tor2_S_2149 GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG- AY304488_SARS-civet_SZ16_S_21477 GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG- NC_009694_SARS-bat_HKU3-1_S_2147 GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG- AY545919_SARS-badger_CFB/SZ/94/0 GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG- NC_009019_Bat-CoV-HKU4_B04f GRLIS------LNAFVSQQLVRSETAAR-------SAQLASDKVNECVKSQSKRNGFCG- NC_009020_Bat-CoV-HKU5_LMH3f GRLTS------LNAFVAQQLVRTEAAAR-------SAQLAQDKVNECVKSQSKRNGFCG- NC_009021_Bat-CoV-HKU9_BF_005I GRMMV------LNTYVTQLLIQASEAKA-------QNALAAQKISECVKAQSLRNDFCG- NC_001451_IBV_Beaudette_S_20368. GRLSS------LSVLASAKQAEYIRVSQ-------QRELATQKINECVKSQSIRYSFCG- AY646283_IBV-partridge_Partridge GRLSS------LSVLASAKQSEYIRVSQ-------QRELATQKINECVKSQSNRYGFCG- AY641576_IBV-peafowl_Peafowl/GD/ GRLSS------LSVLASAKQAEHTRVSQ-------QRELATQKINECVKSQSIRYSFCG- NC_007447_BoTV-1_Breda GECQPIFSEREISRFYSLPLVTDAMVHNDTYWFSWSIPITCSNILGSVYKVQP--GYIV- * :. : . : .* .: NC_002645_HCoV-229E_inf-1_S_2057 NGTHIFSIVNAAPEGLVFLHTVLL--PTQYKDVEAWSGLCV---DGTNGYVLRQPNLALY NC_005831_HCoV-NL63_AmsterdamI_S NGTHIFSIVNSAPDGLLFLHTVLL--PTDYKNVKAWSGICV---DGIYGYVLRQPNLVLY NC_002306_TGEV_PUR46-MAD_S_20365 NGTHLFSLANAAPNGMIFFHTVLL--PTAYETVTAWPGICASDGDRTFGLVVKDVQLTLF NC_003436_PEDV_CV777_S_20638..24 DGEHIFSLVQAAPQGLLFLHTVLV--PGDFVNVLAIAGLCV---NGEIALTLREPGLVLF DQ811787_PRCV_ISU-1_S_20345..240 NGTHLFSLANAAPNGMIFFHTVLL--PTAYETVTAWAGICALDGDRTFGLVVKDVQLTLF AY994055_FIPV_79-1146_S_20436..2 NGTHLFSLANAAPNGMIFFHTVLL--PTAYETVTAWSGICASDGDRTFGLVVKDVQLTLF NC_009657_BtCoV-G1_BtCoV/512/200 EGEHIFSLTQAAPQGLMFLHTVLV--PNGFINVTAVTGLCV---DETIAMTLRQSGFVLF EF203064_Bat-CoV-HKU2_HKU2/GD/43 QGLHVLSLMQNAPSGIMFFHYSLI--PNNTITVKTTPGLCESDELGSKCIV---AKDGVL NC_005147_HCoV-OC43_OC43_S_23644 NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTARVSPGLCI---AGDRGIA---PKSGYF NC_006577_CoV-HKU1A_N1_S_22942.. NGNHILSLVQNAPYGLLFMHFSYK--PISFKTVLVSPGLCI---SGDVGIA---PKQGYF AY884001_CoV-HKU1B_N2_S_22862..2 NGNHILSLVQNAPYGLLFIHFSYK--PTSFKTVLVSPGLCL---SGDRGIA---PKQGYF DQ339101_CoV-HKU1C_N5_S_22802..2 NGNHILSLVQNAPYGLLFIHFSYK--PTSFKTVLVSPGLCL---SGDRGIA---PKQGYF NC_003045_BCoV_BCoV-ENT_S_23641. NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDRGIA---PKSGYF NC_001846_MHV_MHV-A59_S_23929..2 NGNHILSLVQNAPYGLYFIHFSYV--PISFTTANVSPGLCI---SGDRGLA---PKAGYF NC_007732_PHEV_VW572_S_23427..27 NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDIGIS---PKSGYF EF424621_AntelopeCoV_US/OH1/2003 NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDRGIA---PKSGYF EF424622_GiCoV_US/OH3-TC/2006_S_ NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDRGIA---PKSGYF NC_004718_SARS-human_Tor2_S_2149 KGYHLMSFPQAAPHGVVFLHVTYV--PSQERNFTTAPAICH---EGKAYF----PREGVF AY304488_SARS-civet_SZ16_S_21477 KGYHLMSFPQAAPHGVVFLHVTYV--PSQERNFTTAPAICH---EGKAYF----PREGVF NC_009694_SARS-bat_HKU3-1_S_2147 KGYHLMSFPQSAPHGVVFLHVTYV--PSQEKNFTTAPAICH---EGKAYF----PREGVF AY545919_SARS-badger_CFB/SZ/94/0 KGYHLMSFPQAAPHGVVFLHVTYV--PSQERNFTTAPAICH---EGKAYF----PREGVF NC_009019_Bat-CoV-HKU4_B04f SGTHIVSFVVNAPNGFYFFHVGYV--PTNYTNVTAAYGLCNNN-NPPLCIA---PIDGYF NC_009020_Bat-CoV-HKU5_LMH3f TGTHIVSFAINAPNGLYFFHVGYQ--PTSHVNATAAYGLCNTE-NPQKCIA---PIDGYF NC_009021_Bat-CoV-HKU9_BF_005I NGTHVLSIPQLAPNGVLFIHYAYT--PTEYAFVQTSAGLCH---NGTGYA----PRQGMF NC_001451_IBV_Beaudette_S_20368. NGRHVLTIPQNAPNGIVFIHFSYT--PDSFVNVTAIVGFCVKPANASQYAIVPANGRGIF AY646283_IBV-partridge_Partridge SGRHVLSIPQNAPNGIVFIHFTYT--PQSFVNVTAIVGFCVQPANASQYAIVPVNGRGIF AY641576_IBV-peafowl_Peafowl/GD/ NGRHVLTIPQNAPNGIVFIHFSYT--PDSFVNVTAIVGFCVKPANASQYAIVPANGRGIF NC_007447_BoTV-1_Breda NPHHPTSLQYDVPTHVVTSNAGALIFDEHYCDRYNQVYLCT---KSAFDLAESSYLTMLY * :: .* . : :* NC_002645_HCoV-229E_inf-1_S_2057 KE------GNY---------YRITSRIMF-EPRIPTMADFVQIENC---NVTFVNISRSE NC_005831_HCoV-NL63_AmsterdamI_S SDN-----GV----------FRVTSRVMF-QPRLPVLSDFVQIYNC---NVTFVNISRVE NC_002306_TGEV_PUR46-MAD_S_20365 RNL-----DDK---------FYLTPRTMY-QPRVATSSDFVQIEGC---DVLFVNATVSD NC_003436_PEDV_CV777_S_20638..24 THELQTYTATE---------YFVSSRRMF-EPRKPTVSDFVQIESC---VVTYVNLTSDQ DQ811787_PRCV_ISU-1_S_20345..240 RNL-----DDK---------FYLTPRTMY-QPRVATSSDFVQIEGC---DVLFVNATVSD AY994055_FIPV_79-1146_S_20436..2 RNL-----DDK---------FYLTPRTMY-QPRVATSSDFVQIEGC---DVLFVNATVID NC_009657_BtCoV-G1_BtCoV/512/200 VQN-----GN----------YLVSPRKMF-EPRRPEVADFVQVKTC---TISYVNITNNQ EF203064_Bat-CoV-HKU2_HKU2/GD/43 VSA-----NLSY--------WQWSPRNLY-KPENLTFANVIAV-SR---GANYTTLNRTF NC_005147_HCoV-OC43_OC43_S_23644 VNV-----NNT---------WMYTGSGYY-YPEPITENNVVVMSTC---AVNYTKAPYVM NC_006577_CoV-HKU1A_N1_S_22942.. IKH-----NDH---------WMFTGSSYY-YPEPISDKNVVFMNTC---SVNFTKAPLVY AY884001_CoV-HKU1B_N2_S_22862..2 IKQ-----NDS---------WMFTGSSYY-YPEPISDKNVVFMNSC---SVNFTKAPFIY DQ339101_CoV-HKU1C_N5_S_22802..2 IKQ-----NDS---------WMFTGSSYY-YPEPISDKNVVFMNSC---SVNFTKAPFIY NC_003045_BCoV_BCoV-ENT_S_23641. VNV-----NNT---------WMFTGSGYY-YPEPITGNNVVVMSTC---AVNYTKAPDVM NC_001846_MHV_MHV-A59_S_23929..2 VQD-----DGE---------WKFTGSSYY-YPEPITDKNSVIMSSC---AVNYTKAPEVF NC_007732_PHEV_VW572_S_23427..27 INV-----NNS---------WMFTGSGYY-YPEPITQNNVVMMSTC---AVNYTKAPDLM EF424621_AntelopeCoV_US/OH1/2003 VNV-----NNT---------WMFTGSGYY-YPEPITGNNVVVMSTC---AVNYTKAPDVM EF424622_GiCoV_US/OH3-TC/2006_S_ VNV-----NNT---------WMFTGSGYY-YPEPITGNNVVVMSTC---AVNYTKAPDVM NC_004718_SARS-human_Tor2_S_2149 VFN-----GTS---------WFITQRNFF-SPQIITTDNTFVSGNC---DVVIGIINNTV AY304488_SARS-civet_SZ16_S_21477 VFN-----GTS---------WFITQRNFF-SPQIITTDNTFVSGNC---DVVIGIINNTV NC_009694_SARS-bat_HKU3-1_S_2147 VSN-----GTS---------WFITQRNFY-SPQLITTDNTFVSGNC---DVVIGIINNTV AY545919_SARS-badger_CFB/SZ/94/0 VFN-----GTS---------WFITQRNFF-SPQIITTDNTFVSGNC---DVVIGIINNTV NC_009019_Bat-CoV-HKU4_B04f ITN-----QTTTYSVDTE--WYYTGSSFY-KPEPITQANSRYVSS----DVKFDKLENNL NC_009020_Bat-CoV-HKU5_LMH3f VLN-----QTTSTVADSDQQWYYTGSSFF-HPEPITEANSKYVSM----DVKFENLTNRL NC_009021_Bat-CoV-HKU9_BF_005I VLP-----NNTNM-------WHFTTMQFY-NPVNISASNTQVLTSC---SVNYTSVNYTV NC_001451_IBV_Beaudette_S_20368. IQV-----NGS---------YYITARDMY-MPRAITAGDVVTLTSC---QANYVSVNKTV AY646283_IBV-partridge_Partridge IQV-----NGS---------YYITARDMY-MPRDITAGDIVTLTSC---QANYVNVNKTV AY641576_IBV-peafowl_Peafowl/GD/ IQV-----NGS---------YYITARDMY-MPRAITAGDIVTLTSC---QANYVSVNKTV NC_007447_BoTV-1_Breda SNQTDNSSLTFHPAPRPDPCVYLSASALYCYYSDECHQCVIAVGNCTNRTVTYENYTYPI : : NC_002645_HCoV-229E_inf-1_S_2057 LQTIVP--EYIDVNKTLQELSYKL-PNYTVPDLVV-EQ--YNQTI-LNLTSEISTLENKS NC_005831_HCoV-NL63_AmsterdamI_S LHTVIP--DYVDVNKTLQEFAQNL-PKYVKPNFDL-TP--FNLTY-LNLSSELKQLEAKT NC_002306_TGEV_PUR46-MAD_S_20365 LPSIIP--DYIDINQTVQDILENFRPNWTVPELTF-DI--FNATY-LNLTGEIDDLEFRS NC_003436_PEDV_CV777_S_20638..24 LPDVIP--DYIDVNKTLDEILASL-PNRTGPSLPL-DV--FNATY-LNLTGEIADLEQRS DQ811787_PRCV_ISU-1_S_20345..240 LPSIIP--DYIDINQTVQDILENFRPNWTVPDLTF-DI--FNATY-LNLTVEIDDLEFRS AY994055_FIPV_79-1146_S_20436..2 LPSIIP--DYIDINQTVQDILENYRPNWTVPEFTL-DI--FNATY-LNLTGEIDDLEFRS NC_009657_BtCoV-G1_BtCoV/512/200 LPDIIP--DYVDVNKTIDEILANL-PNNTVPDLPL-DV--FNQTF-LNLTGEIADLEARS EF203064_Bat-CoV-HKU2_HKU2/GD/43 DIPELN--STFPIDEEFREYFQN--MSSELQALKN-LT--ADMSK-LNISAEIQ------ NC_005147_HCoV-OC43_OC43_S_23644 LNTSIP--NLPDFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQVEMN------ NC_006577_CoV-HKU1A_N1_S_22942.. LNHSVP--KLSDFESELSHWFKN--QTSIAPNLTL-NLHTINATF-LDLYYEMN------ AY884001_CoV-HKU1B_N2_S_22862..2 LNNSIP--NLSDFEAEFSLWFKN--HTSIAPNLTF-NSH-INATF-LDLYYEMN------ DQ339101_CoV-HKU1C_N5_S_22802..2 LNNSIP--NLSDFEAELSLWFKN--HTSIAPNLTF-NSH-INATF-LDLYYEMN------ NC_003045_BCoV_BCoV-ENT_S_23641. LNISTP--NLPYFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQDEMN------ NC_001846_MHV_MHV-A59_S_23929..2 LNTSIP--NPPDFKEELDKWFKN--QTSIAPDLSL-DFEKLNVTL-LDLTYEMN------ NC_007732_PHEV_VW572_S_23427..27 LNTSTP--NLPDFKEELYQWFKN--QSSVAPDLSL-DY--INVTF-LDLQDEMN------ EF424621_AntelopeCoV_US/OH1/2003 LNISTP--NLPDFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQDEMN------ EF424622_GiCoV_US/OH3-TC/2006_S_ LNISTP--NLPDFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQDEMN------ NC_004718_SARS-human_Tor2_S_2149 YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQKEID------ AY304488_SARS-civet_SZ16_S_21477 YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQEEID------ NC_009694_SARS-bat_HKU3-1_S_2147 YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQKEID------ AY545919_SARS-badger_CFB/SZ/94/0 YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQEEID------ NC_009019_Bat-CoV-HKU4_B04f PPPLLENSTDVDFKDELEEFFKN--VTSHGPNFA--EISKINTTL-LDLSDEMA------ NC_009020_Bat-CoV-HKU5_LMH3f PPPLLSNSTDLDFKEELEEFFKN--VSSQGPNFQ--EISKINTTL-LNLNTELM------ NC_009021_Bat-CoV-HKU9_BF_005I LEPSVP--GDYDFQKEFDKFYKN---LSTIFNNTF-NPNDFNFST-VDVTAQIK------ NC_001451_IBV_Beaudette_S_20368. ITTFVDN-DDFDFNDELSKWWND--TKHELPDFDK-FN--YTVPI-LDIDSEID------ AY646283_IBV-partridge_Partridge ITTFVED-DDFDFDDELSKWWND--TEHELPDFDD-FN--YTVPI-LNISGEID------ AY641576_IBV-peafowl_Peafowl/GD/ ITTFVDN-DDFDFNDELSKWWND--TKHELPDFDK-FN--YTVSI-LDIDSEID------ NC_007447_BoTV-1_Breda MDPQCRGFDQITISSPIA-IGADFTALPSRPPLPL-HLSYVNVTFNVTLPNGVNWTDLVL .. . . . : : : NC_002645_HCoV-229E_inf-1_S_2057 A-ELNYTVQKLQTLIDNINSTLVDLK-----WLNRVETYIK---WPWWVWLCISVVLIFV NC_005831_HCoV-NL63_AmsterdamI_S A-SLFQTTVELQGLIDQINSTYVDLK-----LLNRFENYIK---WPWWVWLIISVVFVVL NC_002306_TGEV_PUR46-MAD_S_20365 E-KLHNTTVELAILIDNINNTLVNLE-----WLNRIETYVK---WPWYVWLLIGLVVIFC NC_003436_PEDV_CV777_S_20638..24 E-SLRNTTEELRSLINNINNTLVDLE-----WLNRVETYIK---WPWWVWLIIVIVLIFV DQ811787_PRCV_ISU-1_S_20345..240 E-KLHNTTVELAILIDNINNTLVNLE-----WLNRIETYVK---WPWYVWLLIGLVVIFC AY994055_FIPV_79-1146_S_20436..2 E-KLHNTTVELAILIDNINNTLVNLE-----WLNRIETYVK---WPWYVWLLIGLVVVFC NC_009657_BtCoV-G1_BtCoV/512/200 E-SLKNTSEELRQLIQNINNTLVDLQ-----WLNRVETFIK---WPWYVWLAIVIALILV EF203064_Bat-CoV-HKU2_HKU2/GD/43 ---------LINEIAHNVSNMRVEVE-----KFQRYVNYVK---WAWWQWLIIFIALTLL NC_005147_HCoV-OC43_OC43_S_23644 ---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLICLAGVAM NC_006577_CoV-HKU1A_N1_S_22942.. ---------LIQESIKSLNNSYINLK-----DIGTYEMYVK---WPWYVWLLISFSFIIF AY884001_CoV-HKU1B_N2_S_22862..2 ---------VIQESIKSLNSSFINLK-----EIGTYEMYVK---WPWYIWLLIVILFIIF DQ339101_CoV-HKU1C_N5_S_22802..2 ---------VIQESIKSLNSSFINLK-----EIGTYEMYVK---WPWYIWLLIVILFIIF NC_003045_BCoV_BCoV-ENT_S_23641. ---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLIGFAGVAM NC_001846_MHV_MHV-A59_S_23929..2 ---------RIQDAIKKLNESYINLK-----EVGTYEMYVK---WPWYVWLLIGLAGVAV NC_007732_PHEV_VW572_S_23427..27 ---------RLQEAIKVLNHSYINLK-----DIGTYEYYVK---WPWYVWLLIGLAGVAM EF424621_AntelopeCoV_US/OH1/2003 ---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLIGFAGVAM EF424622_GiCoV_US/OH3-TC/2006_S_ ---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLIGFAGVAM NC_004718_SARS-human_Tor2_S_2149 ---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI AY304488_SARS-civet_SZ16_S_21477 ---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI NC_009694_SARS-bat_HKU3-1_S_2147 ---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI AY545919_SARS-badger_CFB/SZ/94/0 ---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI NC_009019_Bat-CoV-HKU4_B04f ---------MLQEVVKQLNDSYIDLK-----ELGNYTYYNK---WPWYVWLGFIAGLVAL NC_009020_Bat-CoV-HKU5_LMH3f ---------VLSEVVKQLNESYIDLK-----ELGNYTFYQK---WPWYIWLGFIAGLVAL NC_009021_Bat-CoV-HKU9_BF_005I ---------SLHDVVNQLNQSFIDLK-----KLNVYEKTIK---WPWYVWLAMIAGIVGL NC_001451_IBV_Beaudette_S_20368. ---------RIQGVIQGLNDSLIDLE-----KLSILKTYIK---WPWYVWLAIAFATIIF AY646283_IBV-partridge_Partridge ---------RIQGVIQGLNDSLIDLE-----ELSIIKTYIK---WPWYVWLAIGFAVIIF AY641576_IBV-peafowl_Peafowl/GD/ ---------RIQGVIQGLNDSLIDLE-----KLSILKTYIK---WPWYVWLAIAFATIIF NC_007447_BoTV-1_Breda DYSFKDKVYEISKNITQLHEQILQVSNWASGWFQRLRDFLYGLIPAWITWLTLGFSLFSI : : :::. . .* ** : NC_002645_HCoV-229E_inf-1_S_2057 VSMLLLCCCSTGCCG-FFSCFA--SSIRGCCE--STKLPYYD---VEKIHIQ-------- NC_005831_HCoV-NL63_AmsterdamI_S LSLLVFCCLSTGCCG-CCNCLT--SSMRGCCDCGSTKLPYYE---FEKVHVQ-------- NC_002306_TGEV_PUR46-MAD_S_20365 IPLLLFCCCSTGCCG-CIGCLG--SCCHSICS--RRQFENYEP--IEKVHVH-------- NC_003436_PEDV_CV777_S_20638..24 VSLLVFCCISTGCCG-CCGCCG--ACFSGCCR--GPRLQPYEA--FEKVHVQ-------- DQ811787_PRCV_ISU-1_S_20345..240 IPLLLFCCCSTGCCG-CIGCLG--SCCHSICS--RRQFENYEP--IEKVHVH-------- AY994055_FIPV_79-1146_S_20436..2 IPLLLFCCFSTGCCG-CIGCLG--SCCHSICS--RRQFENYEP--IEKVHVH-------- NC_009657_BtCoV-G1_BtCoV/512/200 VSLLVFCCISTGCCG-CCGCCG--SCFSGCCR--GTKLQHYEP--IEKVHVQ-------- EF203064_Bat-CoV-HKU2_HKU2/GD/43 AGLMLWCCLATGCCG-MCGCLA--ATCASCCDCRGTKLQSYE---IEKIHIQ-------- NC_005147_HCoV-OC43_OC43_S_23644 LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGYQELV----IKTSHDD-------- NC_006577_CoV-HKU1A_N1_S_22942.. LVLLFFICCCTGCGSACFSK------CHNCCDEYGGHHDFV----IKTSHDD-------- AY884001_CoV-HKU1B_N2_S_22862..2 LMILFFICCCTGCGSACFSK------CHNCCDEYGGHNDFV----IKASHDD-------- DQ339101_CoV-HKU1C_N5_S_22802..2 LMILFFICCCTGCGSACFSK------CHNCCDEYGGHNDFV----IKASHDD-------- NC_003045_BCoV_BCoV-ENT_S_23641. LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQELV----IKTSHED-------- NC_001846_MHV_MHV-A59_S_23929..2 CVLLFFICCCTGCGSCCFKK------CGNCCDEYGGHQDSIVIHNI-SSHED-------- NC_007732_PHEV_VW572_S_23427..27 LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQEFV----IKTSHDD-------- EF424621_AntelopeCoV_US/OH1/2003 LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQELV----IKTSHED-------- EF424622_GiCoV_US/OH3-TC/2006_S_ LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQELV----IKTSHED-------- NC_004718_SARS-human_Tor2_S_2149 VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT-------- AY304488_SARS-civet_SZ16_S_21477 VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT-------- NC_009694_SARS-bat_HKU3-1_S_2147 VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT-------- AY545919_SARS-badger_CFB/SZ/94/0 VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT-------- NC_009019_Bat-CoV-HKU4_B04f LLCVFFLLCCTGCGTSCLGKMK----CKNCCDSYEEYD-------VEKIHVH-------- NC_009020_Bat-CoV-HKU5_LMH3f ALCVFFILCCTGCGTSCLGKLK----CNRCCDSYDEYE-------VEKIHVH-------- NC_009021_Bat-CoV-HKU9_BF_005I VLAVIMLMCMTNCCSCFKGMCD----CRRCCGSYDSYDDVYPAVRVNKKRTV-------- NC_001451_IBV_Beaudette_S_20368. ILILGWVFFMTGCCGCCCGCFGIMPLMSKC----GKKSSYYTT--FDNDVVTEQYRPKKS AY646283_IBV-partridge_Partridge ILILGWVFFMTGCCGCCCGCFGIIPLMSKC----GKKSSYYTT--FDNDVVTEQYRPKKS AY641576_IBV-peafowl_Peafowl/GD/ ILILGWVFFMTGCCGCCCGCFGIMPLMSKC----GKKSSYYTT--FDNDVVT-------- NC_007447_BoTV-1_Breda LISGVNIILFFEMNG--------------------------------KVKKS-------- NC_002645_HCoV-229E_inf-1_S_2057 - NC_005831_HCoV-NL63_AmsterdamI_S - NC_002306_TGEV_PUR46-MAD_S_20365 - NC_003436_PEDV_CV777_S_20638..24 - DQ811787_PRCV_ISU-1_S_20345..240 - AY994055_FIPV_79-1146_S_20436..2 - NC_009657_BtCoV-G1_BtCoV/512/200 - EF203064_Bat-CoV-HKU2_HKU2/GD/43 - NC_005147_HCoV-OC43_OC43_S_23644 - NC_006577_CoV-HKU1A_N1_S_22942.. - AY884001_CoV-HKU1B_N2_S_22862..2 - DQ339101_CoV-HKU1C_N5_S_22802..2 - NC_003045_BCoV_BCoV-ENT_S_23641. - NC_001846_MHV_MHV-A59_S_23929..2 - NC_007732_PHEV_VW572_S_23427..27 - EF424621_AntelopeCoV_US/OH1/2003 - EF424622_GiCoV_US/OH3-TC/2006_S_ - NC_004718_SARS-human_Tor2_S_2149 - AY304488_SARS-civet_SZ16_S_21477 - NC_009694_SARS-bat_HKU3-1_S_2147 - AY545919_SARS-badger_CFB/SZ/94/0 - NC_009019_Bat-CoV-HKU4_B04f - NC_009020_Bat-CoV-HKU5_LMH3f - NC_009021_Bat-CoV-HKU9_BF_005I - NC_001451_IBV_Beaudette_S_20368. V AY646283_IBV-partridge_Partridge V AY641576_IBV-peafowl_Peafowl/GD/ - NC_007447_BoTV-1_Breda -