>NC_002645_HCoV-229E_inf-1_S_20570..24091_3522bp_1173aa
------MFVLLVAYALLHIAGCQTTN----------------------------------
----------------------------------GLNTSYSVC-----------------
------------------------------------------------------------
------------------------------------------------------------
-------------NGCVGYSE------------NVFAVE--SGGYIPSDFAFNNWFLLTN
TSSVVD---------GVVRSFQPLLLNCLWSVS-GLRFTTGFVYFNGT-----GRGDCKG
FSSDVLSDVIR-------------YNL---------NFEENLRRGTIL-FKT---SYGVV
VFYCTNNTLV------SGDAHIPFGTVLG---NFYCFV----NTTIGNETTSAFVGA---
----LPKTVREF-VISRTGHFYING-YRYFTLGNVEAVN--FNVTT----AETTDFCTVA
LASYADVLVNVSQTSIANIIYC-NSVINRLRCDQLSFDVPDG--------------FYST
SPIQS-----------VELPVSIVSLPVYHKHTFIVLYVDFKPQSGGGKCFNCYPAGVNI
TLANFNETKGPLCVDTSH-----FTTKYVAVYANVGRWSASINTG---------------
--NCPFSFGKV------NNF--------VKFGSVCFSLK-------DIPGGCAMPIVANW
AYSKYYTI----------------------------------------------------
---------------------------------------------------GSLYVSWSD
GDGI-----------------TGVPQPVEGVSSFMNVTLDK--CTKYNIYDVSGVGVIRV
S-----NDTFLN--GI-TYTSTSGNLLGFKD----------------VTKGTI----YSI
TP------CNPPDQLVVY--------QQAVVGAMLSENFTSYGFSNVVELPKFFYAS---
--------------------------------NGTYNCTDAVLTYSSFGV---CADGS--
-----------------IIAVQPRNVSY---DSVSAIVTA--NLSIPS------------
------------------------------NWTTSVQVEY------LQITSTPIVVDCST
YVCNGNVRCVELLKQYTSACKTIEDALRNSARLESADVS----EMLTFDK--KAFTLANV
SSF----------GDY-N-----LSSVIPSL---PTSG-------SRVAGRSAIEDILFS
KLVTSGLGTVDADYKKCT---KGL--SIADLACAQYYNGIMVLPGVAD------------
---AERMAMYTGSLIGGIALGGLTSAV-S----IPFSLAIQARL------------NYVA
LQTDVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNK---IQDVVN
QQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDTIQADQ---------------QVDRLIT
GRLAA------LNVFVSHTLTKYTEVRA-------SRQLAQQKVNECVKSQSKRYGFCG-
NGTHIFSIVNAAPEGLVFLHTVLL--PTQYKDVEAWSGLCV---DGTNGYVLRQPNLALY
KE------GNY---------YRITSRIMF-EPRIPTMADFVQIENC---NVTFVNISRSE
LQTIVP--EYIDVNKTLQELSYKL-PNYTVPDLVV-EQ--YNQTI-LNLTSEISTLENKS
A-ELNYTVQKLQTLIDNINSTLVDLK-----WLNRVETYIK---WPWWVWLCISVVLIFV
VSMLLLCCCSTGCCG-FFSCFA--SSIRGCCE--STKLPYYD---VEKIHIQ--------
-
>NC_005831_HCoV-NL63_AmsterdamI_S_20472..24542_4071bp_1356aa
---MKLFLILLVLPLASCFFTCNSNANLSMLQ--------------LGVPDNSSTIVTGL
LPT------HWFCANQSTSVYSANGFFYIDVG--NHRSAFALH--------TGYYD----
ANQYYIYVTNEIGLNASVTLKICKF-SRNTTFDFLSNASSSFDCIVNLLFTEQL------
GAPLGITISGETVRLHLYNVTRTFYVPAAYKLTKLSVKCYFNYSC-----------VFSV
VNATVTVNVTTHNGRVVNYTVCDD---CNGYTDNIFSVQ--QDGRIPNGFPFNNWFLLTN
GSTLVD---------GVSRLYQPLRLTCLWPVP-GLKSSTGFVYFNAT--G--SDVNCNG
YQHNSVVDVMR-------------YNLNFS------ANSLDNLKSGVI-VFK-TLQYDVL
-FYCSNSSSG--VLDTT----IPFGPSSQ---PYYCFI----NSTINTTHVSTFVGI---
----LPPTVREI-VVARTGQFYING-FKYFDLGFIEAVN--FNVTT----ASATDFWTVA
FATFVDVLVNVSATNIQNLLYC-DSPFEKLQCEHLQFGLQDG--------------FYSA
NFLDD-----------NVLPETYVALPIYYQHTDINFTATASF---GGSCYVCKPHQVNI
SL----NGNTSVCVRTSHFSIRYIYNRVKSGSPGDSSWHIYLKSG---------------
--TCPFSFSKL------NNF--------QKFKTICFSTV-------EVPGSCNFPLEATW
HYTSYTIV----------------------------------------------------
---------------------------------------------------GALYVTWSE
GNSI-----------------TGVPYPVSGIREFSNLVLNN--CTKYNIYDYVGTGIIRS
S-----NQSLAG--GI-TYVSNSGNLLGFKN----------------VSTGNI----FIV
TP------CNQPDQVAVY--------QQSIIGAMTAVNESRYGLQNLLQLPNFYYVS---
--------------------------------NGGNNCTTAVMTYSNFGI---CADGS--
-------------------LIPVRPRNS-SDNGISAIITA--NLSIPS------------
------------------------------NWTTSVQVEY------LQITSTPIVVDCAT
YVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVS----SMLTFDS--NAFSLANV
TSF----------GDY-N-----LSSVLPQR---NIRS-------SRIAGRSALEDLLFS
KVVTSGLGTVDVDYKSCT---KGL--SIADLACAQYYNGIMVLPGVAD------------
---AERMAMYTGSLIGGMVLGGLTSAA-A----IPFSLALQARL------------NYVA
LQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTIALNK---IQDVVN
QQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQ---------------QVDRLIT
GRLAA------LNAFVSQVLNKYTEVRG-------SRRLAQQKINECVKSQSNRYGFCG-
NGTHIFSIVNSAPDGLLFLHTVLL--PTDYKNVKAWSGICV---DGIYGYVLRQPNLVLY
SDN-----GV----------FRVTSRVMF-QPRLPVLSDFVQIYNC---NVTFVNISRVE
LHTVIP--DYVDVNKTLQEFAQNL-PKYVKPNFDL-TP--FNLTY-LNLSSELKQLEAKT
A-SLFQTTVELQGLIDQINSTYVDLK-----LLNRFENYIK---WPWWVWLIISVVFVVL
LSLLVFCCLSTGCCG-CCNCLT--SSMRGCCDCGSTKLPYYE---FEKVHVQ--------
-
>NC_002306_TGEV_PUR46-MAD_S_20365..24708_4344bp_1447aa
--MKKLFVVLVVMPLIYGDNFPCSKLTNRTIGNQWNLIETFLLNYSSRLPPNSDVVLGDY
FPTVQ----PWFNCIRNDSNDLYVTLENLK----ALYWDYATENITWNHRQRLNVVVNGY
PYSITVTTTRNFNSAEGAIICICKGSPPTTTTESSLTCNWGSECRLNHKFPICPSNSEAN
CGNMLYGLQWFADEVVAYLHGASYRISFENQWSGTVTFGDMRATTLEVAGTLVDLWWFNP
VYDVS-YYRVNNKNGTTVVSNCTD--QCASYVANVFTTQ--PGGFIPSDFSFNNWFLLTN
SSTLVS---------GKLVTKQPLLVNCLWPVP-SFEEAASTFCFEGA-----GFDQCNG
AVLNNTVDVIR-------------FNLNFT------TNVQSGKGATVF-SLN-TTGGVTL
EISCYTVSDS----SFFSYGEIPFGVTDG---PRYCYV-------HYNGTALKYLGT---
----LPPSVKEI-AISKWGHFYING-YNFFSTFPIDCIS--FNLTT----GDSDVFWTIA
YTSYTEALVQVENTAITKVTYC-NSHVNNIKCSQITANLNNG--------------FYPV
SSSEV-----------GLVNKSVVLLPSFYTHTIVNITIGLGMKR-SGYGQPIASTLSNI
TLPMQDHNTDVYCIRSDQF------SVYVHSTCKSALWDNIFKRNCTDVLDATAV---IK
TGTCPFSFDKL------NNY--------LTFNKFCLSLS-------PVGANCKFDVAART
RTNEQVVR----------------------------------------------------
----------------------------------------------------SLYVIYEE
GDNI-----------------VGVPSDNSGVHDLSVLHLDS--CTDYNIYGRTGVGIIRQ
T-----NRTLLS--GL-YYTSLSGDLLGFKN----------------VSDGVI----YSV
TP------CDVSAQAAVI--------DGTIVGAITSINSELLGLTHWTTTPNFYYYSIY-
-------------------NYTNDRTRGTAIDSNDVDC-EPVITYSNIGV---CKNGA--
--------------------FVFINVTH-SDGDVQPISTG--NVTIPT------------
------------------------------NFTISVQVEY------IQVYTTPVSIDCSR
YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVD----SMLFVSE--NALKLASV
EAFNSSETLDPIYKEWPNIGGSWLEGLKYIL---PSHN-------SKRKYRSAIEDLLFD
KVVTSGLGTVDEDYKRCT---GGY--DIADLVCAQYYNGIMVLPGVAN------------
---ADKMTMYTASLAGGITLGALGGGAVA----IPFAVAVQARL------------NYVA
LQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAK---VQDVVN
IQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADA---------------QVDRLIT
GRLTA------LNAFVSQTLTRQAEVRA-------SRQLAKDKVNECVRSQSQRFGFCG-
NGTHLFSLANAAPNGMIFFHTVLL--PTAYETVTAWPGICASDGDRTFGLVVKDVQLTLF
RNL-----DDK---------FYLTPRTMY-QPRVATSSDFVQIEGC---DVLFVNATVSD
LPSIIP--DYIDINQTVQDILENFRPNWTVPELTF-DI--FNATY-LNLTGEIDDLEFRS
E-KLHNTTVELAILIDNINNTLVNLE-----WLNRIETYVK---WPWYVWLLIGLVVIFC
IPLLLFCCCSTGCCG-CIGCLG--SCCHSICS--RRQFENYEP--IEKVHVH--------
-
>NC_003436_PEDV_CV777_S_20638..24789_4152bp_1383aa
MRSLIYFWLLLPVLPTLSLPQDVTRCQSTTNFRRFFSK--------FNVQAPAVVVLGGY
LPSMN--SSSWYCGTGIETASGVHGIFLSYI---DSGQGFEIG--------ISQEPFDPS
GYQLYLHKATNGNTNAIARLRICQFPDNKTLGPTVNDVTTGRNCLFNKAIPAYM----RD
GKDIVVGITWDNDRVTVFADKIYHFYLKNDWSRVATRCYNRRSCA----------MQYVY
TPTYYMLNVTSAGEDGIYYEPCTA--NCTGYAANVFATD--SNGHIPEGFSFNNWFLLSN
DSTLLH---------GKVVSNQPLLVNCLLAIPKIYGLGQFFSFNHTM------DGVCNG
AAVDRAPEALR-------------FNINDT------SVILAEGSIVLH-TAL----GTNL
SFVCSNSSDP--HLAIFAI---PLGATEV---PYYCFL----KVDTYNSTVYKFLAV---
----LPPTVREI-VITKYGDVYVNG-FGYLHLGLLDAVT--INFTGHGTDDDVSGFWTIA
STNFVDALIEVQGTSIQRILYC-DDPVSQLKCSQVAFDLDDG--------------FYPI
SSRNL----LS-----HEQPISFVTLPSFNDHSFVNITVSAAF----GGLSSANLVASDT
TI----NGFSSFCVDTRQFTITLFYNVT----------------------NSYGYVSKSQ
DSNCPFTLQSV------NDY--------LSFSKFCVSTS-------LLAGACTIDLFGYP
AFGSGVKL----------------------------------------------------
---------------------------------------------------TSLYFQFTK
GELI-----------------TGTPKPLEGITDVSFMTLDV--CTKYTIYGFKGEGIITL
T-----NSSILA--GV-YYTSDSGQLLAFKN----------------VTSGAV----YSV
TP------CSFSEQAAYV--------NDDIVGVISSLSNS--TFNNTRELPGFFYHS---
--------------------------------NDGSNCTEPVLVYSNIGV---CKSGS--
--------------------IGYVPSQY-GQVKIAPTVTG--NISIPT------------
------------------------------NFSMSIRTEY------LQLYNTPVSVDCAT
YVCNGNSRCKQLLTQYTAACKTIESALQLSARLESVEVN----SMLTISE--EALQLATI
SSFNG--------DGY-N-----FTNVLGASVYDPASG-------RVVQKRSVIEDLLFN
KVVTNGLGTVDEDYKRCS---NGR--SVADLVCAQYYSGVMVLPGVVD------------
---AEKLHMYSASLIGGMALGGITAAA-A----LPFSYAVQARL------------NYLA
LQTDVLQRNQQLLAESFNSAIGNITSAFESVKEAISQTSKGLNTVAHALTK---VQEVVN
SQGSALNQLTVQLQHNFQAISSSIDDIYSRLDILSADV---------------QVDRLIT
GRLSA------LNAFVAQTLTKYTEVQA-------SRKLAQQKVNECVKSQSQRYGFCGG
DGEHIFSLVQAAPQGLLFLHTVLV--PGDFVNVLAIAGLCV---NGEIALTLREPGLVLF
THELQTYTATE---------YFVSSRRMF-EPRKPTVSDFVQIESC---VVTYVNLTSDQ
LPDVIP--DYIDVNKTLDEILASL-PNRTGPSLPL-DV--FNATY-LNLTGEIADLEQRS
E-SLRNTTEELRSLINNINNTLVDLE-----WLNRVETYIK---WPWWVWLIIVIVLIFV
VSLLVFCCISTGCCG-CCGCCG--ACFSGCCR--GPRLQPYEA--FEKVHVQ--------
-
>DQ811787_PRCV_ISU-1_S_20345..24013_3669bp_1222aa
--MKTLFVVLVIM-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------PLIYGDNFPCSNCTD--QCASYVANVFVTQ--PGGFIPSDFSFNNWFLLTN
SSTLVS---------GKLVTKQPLLVNCLWPVP-SFEEAASTFCFEGA-----DFDQCNG
AVLNNTVDVIR-------------FNLNFT------TNVQSGKGATVF-SLN-TTGGVTL
EISCYNDTGS--DSSFSSYGEIPFGVTDG---PRYCYV-------LYNGTALKYLGT---
----LPPSVKEI-AISKWGHFYING-YNFFSTFPIDCIS--FNLTT----GDSDVFWTIA
YTSYTEALVQVENTAITKVTYC-NSYVNNIKCSQLTANLNNG--------------FYPV
SSSEV-----------GLVNKSVVLLPSFYTHTIVNITIGLGMKR-SGYGQPIASTLSNI
TLPTQDNNTDVYCILSDQF------SVYVHSTCKSALWDNVFKRNCTDVLDATAV---IK
TGTCPFSFDKL------NNY--------LTFNKFCLSLS-------PVGANCKFDVVART
RTNDQVVR----------------------------------------------------
----------------------------------------------------SLYVIYEE
GDNI-----------------VGVPSDNSGLHDLSVLHLDS--CTDYNIYGRTGVGIIRQ
T-----NRTLLS--GL-YYTSLSGDLLGFKN----------------VSDGVI----YSV
TP------CDVSAQAAVI--------DGTIVGAITSINSELLGLTHWTTTPNFYYYSIY-
-------------------NYTNDRIRGTAIDSNDVDC-EPVITYSNIGV---CKNGA--
--------------------LVFINVTH-SDGDVQPISTG--NVTIPT------------
------------------------------NFTISVQVEY------IQVYTTPVSIDCSR
YVCNGNPRCNKLLTQYVSACQTIEQALAMSARLENMEVD----SMLFVSE--NALKLASV
EAFNSSETLDPIYKDWPNIGGSWLEGLKYIL---PSDN-------SKRQYRSAIEDLLFS
KVVTSGLGTVDEDYKRCT---GGY--DIADLVCAQYYNGIMVLPGVAN------------
---ADKMTMYTASLAGGITLGALGGGAVA----IPFAVAVQARL------------NYVA
LQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAK---VQDVVN
TQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADA---------------QVDRLIT
GRLTA------LNAFVSQTLTRQAEVRA-------SRQLAKDKVNECVRSQSQRFGFCG-
NGTHLFSLANAAPNGMIFFHTVLL--PTAYETVTAWAGICALDGDRTFGLVVKDVQLTLF
RNL-----DDK---------FYLTPRTMY-QPRVATSSDFVQIEGC---DVLFVNATVSD
LPSIIP--DYIDINQTVQDILENFRPNWTVPDLTF-DI--FNATY-LNLTVEIDDLEFRS
E-KLHNTTVELAILIDNINNTLVNLE-----WLNRIETYVK---WPWYVWLLIGLVVIFC
IPLLLFCCCSTGCCG-CIGCLG--SCCHSICS--RRQFENYEP--IEKVHVH--------
-
>AY994055_FIPV_79-1146_S_20436..24794_4359bp_1452aa
MIVLVTCLLLLCSYHTVLSTTNNECIQVNVTQLAGNENLIRDFLF-SNFKEEGSVVVGGY
YPTEVWYNCSRTARTTAFQYFNNIHAFYFVMEAMENSTGNARG------KPLLFHVHGEP
VSVIISAYRDDVQQRPLLKHGLVCITKNRHINYEQFTSNQWNSTCTGADRKIPFSVIPTD
NGTKIYGLEWNDDFVTAYISGRSYHLNINTNWFNNVTLLYSRSSTATWEYSAAYAYQGVS
NFT---YYKLNNTNGLKTYELCEDYEHCTGYATNVFAPT--SGGYIPDGFSFNNWFLLTN
SSTFVS---------GRFVTNQPLLINCLWPVP-SFGVAAQEFCFEGA-----QFSQCNG
VSLNNTVDVIR-------------FNLNFT------ADVQSGMGATVF-SLN-TTGGVIL
EISCYSDTVS--ESSSYSYGEIPFGITDG---PRYCYV-------LYNGTALKYLGT---
----LPPSVKEI-AISKWGHFYING-YNFFSTFPIGCIS--FNLTT----GVSGAFWTIA
YTSYTEALVQVENTAIKNVTYC-NSHINNIKCSQLTANLNNG--------------FYPV
ASSEV-----------GFVNKSVVLLPSFFTYTAVNITIDLGMKL-SGYGQPIASTLSNI
TLPMQDNNTDVYCIRSNQF------SVYVHSTCKSSLWDNIFNQDCTDVLEATAV---IK
TGTCPFSFDKL------NNY--------LTFNKFCLSLS-------PVGANCKFDVAART
RTNEQVVR----------------------------------------------------
----------------------------------------------------SLYVIYEE
GDNI-----------------VGVPSDNSGLHDLSVLHLDS--CTDYNIYGRTGVGIIRR
T-----NSTLLS--GL-YYTSLSGDLLGFKN----------------VSDGVI----YSV
TP------CDVSAQAAVI--------DGAIVGAMTSINSELLGLTHWTTTPNFYYYSIY-
-------------------NYTSERTRGTAIDSNDVDC-EPVITYSNIGV---CKNGA--
--------------------LVFINVTH-SDGDVQPISTG--NVTIPT------------
------------------------------NFTISVQVEY------MQVYTTPVSIDCAR
YVCNGNPRCNKLLTQYVSACQTIEQALAMGARLENMEVD----SMLFVSE--NALKLASV
EAFNSTENLDPIYKEWPSIGGSWLGGLKDIL---PSHN-------SKRKYGSAIEDLLFD
KVVTSGLGTVDEDYKRCT---GGY--DIADLVCAQYYNGIMVLPGVAN------------
---ADKMTMYTASLAGGITLGALGGGAVA----IPFAVAVQARL------------NYVA
LQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAK---VQDVVN
TQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADA---------------QVDRLIT
GRLTA------LNAFVSQTLTRQAEVRA-------SRQLAKDKVNECVRSQSQRFGFCG-
NGTHLFSLANAAPNGMIFFHTVLL--PTAYETVTAWSGICASDGDRTFGLVVKDVQLTLF
RNL-----DDK---------FYLTPRTMY-QPRVATSSDFVQIEGC---DVLFVNATVID
LPSIIP--DYIDINQTVQDILENYRPNWTVPEFTL-DI--FNATY-LNLTGEIDDLEFRS
E-KLHNTTVELAILIDNINNTLVNLE-----WLNRIETYVK---WPWYVWLLIGLVVVFC
IPLLLFCCFSTGCCG-CIGCLG--SCCHSICS--RRQFENYEP--IEKVHVH--------
-
>NC_009657_BtCoV-G1_BtCoV/512/2005_S_20671..24786_4116bp_1371aa
--MKYTLLFCVVFATVSFGFADNERCNKTVNLTRLFSK--------FDIQPPSQVVLAGL
LPNQ---TAQWKCTTETNKRDEGVGVKGVFLSYVSSGRGFTIG--------VSQYNFDPS
TYQLYLHRDTNGNSNAFAYLRICKWPSKKWLQSTSNMDTSGRFCLVNKKIPAAF----TD
HANMVVGITWDQDRVTFYTDKVYHFYVPNNRWSRVVSWCSAADSC---------AMQYIN
STIYYNLNVTTPGPGGITYSVCTK--HCTGLADNVFSTD--QGGHIPPIFPYNNWFLLTN
TSTLVQ---------GVTRVFQPFLVNCLVALPKLQGLTTTLSFDS--------------
-----PLNVPG---------------FSCNGANGSSSAEAFRFNVNDT-KLF---VGAGA
VTLNTVDGVNVSIVCSNNATQPTRSNNLQEDLPYYCFT----NTSSGTNHTVKFLSV---
----FPPIIREF-VITKYGNVYVNG-YIYLRTRPLTAVH----LNASSHSQDVAGFWTIA
ATNFTDVLVEVNNTGIQRLLYC-DTPENSVKCSQLSFELEDG--------------FYSM
TADNV----YA-----VTKPHTFVTLPTFNDHGFVNVTVGGNF----DSSYPPKFTANGT
LV----NNGTVVCVTSNQF-----------------TLRHDFMVGYSADMRKGIF---EY
SSTCPFNRETI------NNY--------LTFGRICFSTS-------PADGACELKYYVWN
TIGAVSHL----------------------------------------------------
--------------------------------------------------AGTLYVQHTK
GDII-----------------TGTPKPLQGLNDISELHLDT--CTTYTIYGFRGDGVIRL
T-----NQTFLS--GV-YYTSESGQLLAFKN----------------VTTGQI----YSV
TP------CQLVQQVAFV--------EDRIVGVISSANNT-GFFNSTRTFPGFYYHS---
--------------------------------NDTTNCTSPRLVYSNIGV---CTSGA--
--------------------IGLLSPKA-AQPQVQPMFQG--NISIPT------------
------------------------------NFTMSVRTEY------IQLFNKPVSVDCAM
YVCNGNDRCKQLLSQYTSACKNIESALQLSARLESMEVN----SMLTVSD--EALKLATI
SQFPG--------GGY-N-----FTNILPAN---PGA-------------RSVIEDILFD
KVVTSGLGTVDEDYKRCS---NGL--SIADLACAQHYNGIMVLPGVAD------------
---WEKVHMYSASLVGGMTLGGITSAA-A----LPFSYAVQARL------------NYVA
LQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQTSAGLNTVAEALSK---VQDVVN
GQGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADA---------------QVDRLIT
GRLAA------LNAFVAQSLTKYAEVQA-------SRTLAKQKVNECVKSQSPRYGFCGD
EGEHIFSLTQAAPQGLMFLHTVLV--PNGFINVTAVTGLCV---DETIAMTLRQSGFVLF
VQN-----GN----------YLVSPRKMF-EPRRPEVADFVQVKTC---TISYVNITNNQ
LPDIIP--DYVDVNKTIDEILANL-PNNTVPDLPL-DV--FNQTF-LNLTGEIADLEARS
E-SLKNTSEELRQLIQNINNTLVDLQ-----WLNRVETFIK---WPWYVWLAIVIALILV
VSLLVFCCISTGCCG-CCGCCG--SCFSGCCR--GTKLQHYEP--IEKVHVQ--------
-
>EF203064_Bat-CoV-HKU2_HKU2/GD/430/2006_S_20476..23862_3387bp_1128aa
--MKLFIVFVLLFRVCYCCDYVDFRLFNGIFST-------------SRGLSNTTTVITGA
YPSTN--KAKWFC---------------------PTNVGRPVG-----------------
------------------------------------------------------------
------------------------------------------------------------
---------TGVGIGVYAQTA--------------------QASYETGG---------SG
AGGYTF---------SVSPKHVTNLTWSLWVHR---PWGANAN-----------------
------------------------VTVRLC-----RWWQKFSFNETAH-FQP---AGPSS
AFECLVNG--------------SFPSSQH---KGYMF-----GVTWYNDFVRII------
----FPPT---------VFELQLDG-LQWEYVQFTGPVN----------AGRMTKFNVVT
EISSVLVLT-DQSGAVTRYSYCADGFVNGLQCKLRLFDIPPG--------------VYSN
SEVEY---PVA-----LYTVVHNMSVCPQRPESYCGSNYCPFK---RVVFSNCVVNYTSW
TSGLLRD---------------------YQHLVLPNGKFNPF------------------
-TECNGLNRIV------DDC-------VTGFVLRVGRGT-------AVNRTVITPYLKPN
ECFGWSWN----------------------------------------------------
-------------------------------------------------DYQDSIYDWWI
ADFVST---------------GAFVCEKNPDAPRTGV------CITYTIEKVTFQGVLYE
S-----NFTFAQYYNV-LYFGS--QLKYVR------------------ILGKV----YEV
AP------CFEASYDVLF---RSSSSFGLLYRSFDCNQLR--------ISASRFAERLLP
SHN----------------GTATALGCLFNATYAPNDTMVNCTNPLGDGF---CADLL--
-----------SNVVVRRMTFEKHDTTY-----VAPVTNERFT-ELPL------------
------------------------------DHQLVLTEQF------LQTTMPKFSISCET
YICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVS----GLYSTIAAKTSSITPTT
DRFNV--------SQF----------FLPKV---QSNS-------ERFESRSVIEDLLFS
KIETTGPGFYGD-YYNCK---KN---AIQDLTCAQYHNGILVIPPVMD------------
---AETLGMYGGIAAASLTLGIFGGQA-G---ITTWSLAMAGRL------------NALG
VVQNALVDDVNKLANGFNQLTASV--------------GKLALTTSSALQA---IQAVVN
QNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADV---------------QMDRLIN
GRMNV------LQLFVTNYKLKIAELRN-------THRYVQSLINECVYAQSLRNGFCG-
QGLHVLSLMQNAPSGIMFFHYSLI--PNNTITVKTTPGLCESDELGSKCIV---AKDGVL
VSA-----NLSY--------WQWSPRNLY-KPENLTFANVIAV-SR---GANYTTLNRTF
DIPELN--STFPIDEEFREYFQN--MSSELQALKN-LT--ADMSK-LNISAEIQ------
---------LINEIAHNVSNMRVEVE-----KFQRYVNYVK---WAWWQWLIIFIALTLL
AGLMLWCCLATGCCG-MCGCLA--ATCASCCDCRGTKLQSYE---IEKIHIQ--------
-
>NC_005147_HCoV-OC43_OC43_S_23644..27729_4086bp_1361aa
----MFLILLISLPTAFAVIGDLKCTSD------------------TSYINDKDTGPPPI
STDTV--DVTN-----------------------GLGTYYVLD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLFLNGYYPTSG------------STYRNMALKGSVLLSRLWFKPPFLSDF
INGIFA---------KVKNTKVIKDRVMYSEFP-AITIGSTFVNTS--------------
YSVVVQPRTIN-STQDGYNKLQGLLEVSVC------QYNMCEYPQTIC-HPN--LGNHRK
ELWHLDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT----
----DTGVVTKF-----LFNVYL---GMALSHYYVMPLT--CNSKVKN--GFTLEYWVTP
LTSRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIAPPTG--------------VYEL
NGYTV--QPIAD----VYRRKLNLPNCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL
MSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT
ATSCQLYYNLPAANVSVSRFNPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAP
KNFCPCKLNG--S-CVGSGPG-----KNNGIGTCPAGTNYLTC------DN------LCT
PDPITFKATGTYKCPQTKSLVGIGEHCSGLAVKSDYCG--GN----SCTCRPQAFLGWSA
DSCLQGDKCNIFANFILHDVNSGLTCSTDLQKANTDIILGV--CVNYDLYGILGQGIFVE
V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YITNRT----FMI
RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNSLTRQLQPINY-------
--------------------FDSYLGCVVNAYNSTAISVQTCDLTVGSGY---CVDYS--
---KNRRSRGAITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------
------------------------------EFTIGNMEEF------IQTSSPKVTIDCAA
FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG
VNFNV--------DDI-N-----FSPVLGCL---GSEC-------SKASSRSAIEDLLFD
KVKLSDVGFVEA-YNNCT---GGA--EIRDLICVQSYKGIKVLPPLLS------------
---ENQISGYTLAATSASLFPLWTAAA-G----VPFYLNVQYRI------------NGLG
VTMDVLSQNQKLIANAFNNALYAI--------------QEGFDATNSALVK---IQAVVN
ANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAEA---------------QIDRLIN
GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG-
NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTARVSPGLCI---AGDRGIA---PKSGYF
VNV-----NNT---------WMYTGSGYY-YPEPITENNVVVMSTC---AVNYTKAPYVM
LNTSIP--NLPDFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQVEMN------
---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLICLAGVAM
LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGYQELV----IKTSHDD--------
-
>NC_006577_CoV-HKU1A_N1_S_22942..27012_4071bp_1356aa
-----MLLIIFILPTTLAVIGDFNCT--------------------NFAINDLNTTVPRI
SEYVV--DVSY-----------------------GLGTYYILD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTILFTGYFPKSG------------ANFRDLSLKGTTYLSTLWYQKPFLSDF
NNGIFS---------RVKNTKLYVNKTLYSEFS-TIVIGSVFINNS--------------
YTIVVQPHNGV-------------LEITAC------QYTMCEYPHTIC-KSK---GSSRN
ESWHFDKSEP---LCLFKK---NFTYNVS---TDWLYF----HFYQERGTFYAYYA----
----DSGMPTTF-----LFSLYL---GTLLSHYYVLPLT--CNAISSNTDNETLQYWVTP
LSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTG--------------VYDL
SGFTV--KPVAT----VHRRIPDLPDCDIDKWLNNFNVPSPLNWE-RKIFSNCNFNLSTL
LRLVHTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTT
SSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNFNLS---------SHSVVYSRYCFSVN
NTFCPCAKPSFASSCKSHKPP---------SASCPIGTNYRSCESTTVLDHTDWCRCSCL
PDPIT--AYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSY
DTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPNTEVFTDV--CVDYDLYGITGQGIFKE
V-----SAVYYNSWQN-LLYDSNGNIIGFKD----------------FVTNKT----YNI
FP------CYAGRVSAAF--HQNASSLALLYRNLKCSYVL-----NNISLTTQPY-----
--------------------FDSYLGCVFNADNLTDYSVSSCALRMGSGF---CVDYNSP
SSSSSRRKRRSISASYRFVTFEPFNVSF-VNDSIESVGGL-YEIKIPT------------
------------------------------NFTIVGQEEF------IQTNSPKVTIDCSL
FVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVT--LSSNLNTN
LHFDV--------DNI-N-----FKSLVGCL---GPHC-------GSSS-RSFFEDLLFD
KVKLSDVGFVEA-YNNCT---GGS--EIRDLLCVQSFNGIKVLPPILS------------
---ESQISGYTTAATVAAMFPPWSAAA-G----IPFSLNVQYRI------------NGLG
VTMDVLNKNQKLIATAFNNALLSI--------------QNGFSATNSALAK---IQSVVN
SNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQV---------------QIDRLIN
GRLTA------LNAYVSQQLSDISLVKF-------GAALAMEKVNECVKSQSPRINFCG-
NGNHILSLVQNAPYGLLFMHFSYK--PISFKTVLVSPGLCI---SGDVGIA---PKQGYF
IKH-----NDH---------WMFTGSSYY-YPEPISDKNVVFMNTC---SVNFTKAPLVY
LNHSVP--KLSDFESELSHWFKN--QTSIAPNLTL-NLHTINATF-LDLYYEMN------
---------LIQESIKSLNNSYINLK-----DIGTYEMYVK---WPWYVWLLISFSFIIF
LVLLFFICCCTGCGSACFSK------CHNCCDEYGGHHDFV----IKTSHDD--------
-
>AY884001_CoV-HKU1B_N2_S_22862..26917_4056bp_1351aa
-----MFLIIFILPTTLAVIGDFNCT--------------------NSFINDYNKTIPRI
SEDVV--DVSL-----------------------GLGTYYVLN--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLLFTGYFPKSG------------ANFRDLALKGSKYLSTLWYKPPFLSDF
NNGIFS---------KVKNTKLYVNNTLYSEFS-TIVIGSVFVNTS--------------
YTIVVQPHNGI-------------LEITAC------QYTMCEYPHTVC-KSK---GSIRN
ESWHIDSSEP---LCLFKK---NFTYNVS---ADWLYF----HFYQERGVFYAYYA----
----DVGMPTTF-----LFSLYL---GTILSHYYVMPLT--CKAISSNTDNETLEYWVTP
LSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTG--------------VYDL
SGFTV--KPVAT----VYRRIPNLPDCDIDNWLNNVSVPSPLNWE-RRIFSNCNFNLSTL
LRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDIS
SSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNVS---------SYDVVYSDHCFSVN
SDFCPCADPSVVNSCVKSKPL---------SAICPAGTKYRHCDLDTTLYVNNWCRCSCL
PDPIS--TYSPNTCPQKKVVVGIGEHCPGLGINEEKCG--TQLNHSSCSCSPDAFLGWSF
DSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEVSTGV--CVNYDLYGITGQGIFKE
V-----SAAYYNNWQN-LLYDSNGNIIGFKD----------------FLTNKT----YTI
LP------CYSGRVSAAF--YQNSSSPALLYRNLKCSYVL----NNISFISQPFY-----
--------------------FDSYLGCVLNAVNLTSYSVSSCDLRMGSGF---CIDYA--
-LPSSRRKRRGISSPYRFVTFEPFNVSF-VNDSVETVGGL-FEIQIPT------------
------------------------------NFTIAGHEEF------IQTSSPKVTIDCSA
FVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVT--LSSNLNTN
LHSDV--------DNI-D-----FKSLLGCL---GSQC-------GSSS-RSLLEDLLFN
KVKLSDVGFVEA-YNNCT---GGS--EIRDLLCVQSFNGIKVLPPILS------------
---ETQISGYTTAATVAAMFPPWSAAA-G----VPFSLNVQYRI------------NGLG
VTMDVLNKNQKLIANAFNKALLSI--------------QNGFTATNSALAK---IQSVVN
ANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQV---------------QIDRLIN
GRLTA------LNAYVSQQLSDITLIKA-------GASRAIEKVNECVKSQSPRINFCG-
NGNHILSLVQNAPYGLLFIHFSYK--PTSFKTVLVSPGLCL---SGDRGIA---PKQGYF
IKQ-----NDS---------WMFTGSSYY-YPEPISDKNVVFMNSC---SVNFTKAPFIY
LNNSIP--NLSDFEAEFSLWFKN--HTSIAPNLTF-NSH-INATF-LDLYYEMN------
---------VIQESIKSLNSSFINLK-----EIGTYEMYVK---WPWYIWLLIVILFIIF
LMILFFICCCTGCGSACFSK------CHNCCDEYGGHNDFV----IKASHDD--------
-
>DQ339101_CoV-HKU1C_N5_S_22802..26857_4056bp_1351aa
-----MFLIIFILPTTLAVIGDFNCT--------------------NSFINDYNKTIPRI
SEDVV--DVSL-----------------------GLGTYYVLN--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLLFTGYFPKSG------------ANFRDLALKGSIYLSTLWYKPPFLSDF
NNGIFS---------KVKNTKLYVNNTLYSEFS-TIVIGSVFVNTS--------------
YTIVVQPHNGI-------------LEITAC------QYTMCEYPHTVC-KSK---GSIRN
ESWHIDSSEP---LCLFKK---NFTYNVS---ADWLYF----HFYQERGVFYAYYA----
----DVGMPTTF-----LFSLYL---GTILSHYYVMPLT--CNAISSNTDNETLEYWVTP
LSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTG--------------VYDL
SGFTV--KPVAT----VYRRIPNLPDCDIDNWLNNVSVPSPLNWE-RRIFSNCNFNLSTL
LRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDIS
SSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNLS---------SYDVVYSDHCFSVN
SDFCPCADPSVVNSCAKSKPP---------SAICPAGTKYRHCDLDTTLYVKNWCRCSCL
PDPIS--TYSPNTCPQKKVVVGIGEHCPGLGINEEKCG--TQLNHSSCFCSPDAFLGWSF
DSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGV--CVNYDLYGITGQGIFKE
V-----SAAYYNNWQN-LLYDSNGNIIGFKD----------------FLTNKT----YTI
LP------CYSGRVSAAF--YQNSSSPALLYRNLKCSYVL----NNISFISQPFY-----
--------------------FDSYLGCVLNAVNLTSYSVSSCDLRMGSGF---CIDYA--
-LPSSRRKRRGISSPYRFVTFEPFNVSF-VNDSVETVGGL-FEIQIPT------------
------------------------------NFTIAGHEEF------IQTSSPKVTIDCSA
FVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVT--LSSNLNTN
LHSDV--------DNI-D-----FKSLLGCL---GSQC-------GSSS-RSLLEDLLFN
KVKLSDVGFVEA-YNNCT---GGS--EIRDLLCVQSFNGIKVLPPILS------------
---ETQISGYTTAATVAAMFPPWSAAA-G----VPFSLNVQYRI------------NGLG
VTMDVLNKNQKLIANAFNKALLSI--------------QNGFTATNSALAK---IQSVVN
ANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQV---------------QIDRLIN
GRLTA------LNAYVSQQLSDITLIKA-------GASRAIEKVNECVKSQSPRINFCG-
NGNHILSLVQNAPYGLLFIHFSYK--PTSFKTVLVSPGLCL---SGDRGIA---PKQGYF
IKQ-----NDS---------WMFTGSSYY-YPEPISDKNVVFMNSC---SVNFTKAPFIY
LNNSIP--NLSDFEAELSLWFKN--HTSIAPNLTF-NSH-INATF-LDLYYEMN------
---------VIQESIKSLNSSFINLK-----EIGTYEMYVK---WPWYIWLLIVILFIIF
LMILFFICCCTGCGSACFSK------CHNCCDEYGGHNDFV----IKASHDD--------
-
>NC_003045_BCoV_BCoV-ENT_S_23641..27732_4092bp_1363aa
----MFLILLISLPTAFAVIGDLKCT--------------------TVSINDVDTGVPSI
STDTV--DVTN-----------------------GLGTYYVLD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLLLNGYYPTSG------------STYRNMALKGTLLLSTLWFKPPFLSDF
TNGIFA---------KVKNTKVIKDGVMYSEFP-AITIGSTFVNTS--------------
YSVVVQPHTTI-----LGNKLQGFLEISVC------QYTMCEYPNTIC-NPN--LGNQRV
ELWHWDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT----
----DTGVVTKF-----LFNVYL---GTVLSHYYVMPLT--CNS------ALTLEYWVTP
LTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTG--------------VYEL
NGYTV--QPIAD----VYRRIPNLPDCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL
MSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT
ATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAS
TNFCPCKLDG--SLCVGNGPGIDAGYKTSGIGTCPAGTNYLTC------HNAAQCDCLCT
PDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCG--GN----PCTCQPQAFLGWSV
DSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGV--CVNYDLYGITGQGIFVE
V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YLTNRT----FMI
RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNTLSRQLQPINY-------
--------------------FDSYLGCVVNADNSTSSVVQTCDLTVGSGY---CVDYS--
---TKRRSRRSITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------
------------------------------EFTIGNMEEF------IQTSSPKVTIDCSA
FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG
VNFNV--------DDI-N-----FSPVLGCL---GSDC-------NKVSSRSAIEDLLFS
KVKLSDVGFVEA-YNNCT---GGA--EIRDLICVQSYNGIKVLPPLLS------------
---ENQISGYTLAATSASLFPPWSAAA-G----VPFYLNVQYRI------------NGIG
VTMDVLSQNQKLIANAFNNALGAI--------------QEGFDATNSALVK---IQAVVN
ANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQA---------------QIDRLIN
GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG-
NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDRGIA---PKSGYF
VNV-----NNT---------WMFTGSGYY-YPEPITGNNVVVMSTC---AVNYTKAPDVM
LNISTP--NLPYFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQDEMN------
---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLIGFAGVAM
LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQELV----IKTSHED--------
-
>NC_001846_MHV_MHV-A59_S_23929..27903_3975bp_1324aa
----MLFVFILFLPSCLGYIGDFRCIQ-------------------LVNSNGANVSAPSI
STETV--EVSQ-----------------------GLGTYYVLD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNATLLLTGYYPVDG------------SKFRNLALTGTNSVSLSWFQPPYLSQF
NDGIFA---------KVQNLKTSTPSGATAYFP-TIVIGSLFGYTS--------------
YTVVIEPYNGV-------------IMASVC------QYTICLLPYTDC-KPN-TNGNKLI
GFWHTDVKPP---ICVLKR---NFTLNVN---ADAFYF----HFYQHGGTFYAYYA----
----DKPSATTF-----LFSVYI---GDILTQYYVLPFI--CNPTAGS--TFAPRYWVTP
LVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTG--------------VYEL
SGYTV--QPVGV----VYRRVANLPACNIEEWLTARSVPSPLNWE-RKTFQNCNFNLSSL
LRYVQAESLFCNNIDASKVYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTA
ATSCQLHYTLPKNNVTINNHNPSSWNRRYGFNDAGVFGK------NQHDVVYAQQCFTVR
SSYCPCAQPDIVSPCTTQTKP---------------------------------------
----------------KSAFVNVGDHCEGLGVLEDNCG--NADPHKGCICANNSFIGWSH
DTCLVNDRCQIFANILLNGINSGTTCSTDLQLPNTEVVTGI--CVKYDLYGITGQGVFKE
V-----KADYYNSWQT-LLYDVNGNLNGFRD----------------LTTNKT----YTI
RS------CYSGRVSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPLNY-------
--------------------FDSYLGCVVNADNRTDEALPNCDLRMGAGL---CVDYS--
---KSRRADRSVSTGYRLTTFEPYTPML-VNDSVQSVDGL-YEMQIPT------------
------------------------------NFTIGHHEEF------IQTRSPKVTIDCAA
FVCGDNTACRQQLVEYGSFCVNVNAILNEVNNLLDNMQLQVASALMQGVT--ISSRLPDG
ISGPI--------DDI-N-----FSPLLGCI---GSTCAEDGNGPSAIRGRSAIEDLLFD
KVKLSDVGFVEA-YNNCT---GGQ--EVRDLLCVQSFNGIKVLPPVLS------------
---ESQISGYTTGATAAAMFPPWSAAA-G----VPFSLSVQYRI------------NGLG
VTMNVLSENQKMIASAFNNALGAI--------------QDGFDATNSALGK---IQSVVN
ANAEALNNLLNQLSNRFGAISASLQEILTRLEAVEAKA---------------QIDRLIN
GRLTA------LNAYISKQLSDSTLIKV-------SAAQAIEKVNECVKSQTTRINFCG-
NGNHILSLVQNAPYGLYFIHFSYV--PISFTTANVSPGLCI---SGDRGLA---PKAGYF
VQD-----DGE---------WKFTGSSYY-YPEPITDKNSVIMSSC---AVNYTKAPEVF
LNTSIP--NPPDFKEELDKWFKN--QTSIAPDLSL-DFEKLNVTL-LDLTYEMN------
---------RIQDAIKKLNESYINLK-----EVGTYEMYVK---WPWYVWLLIGLAGVAV
CVLLFFICCCTGCGSCCFKK------CGNCCDEYGGHQDSIVIHNI-SSHED--------
-
>NC_007732_PHEV_VW572_S_23427..27476_4050bp_1349aa
----MFFILLISLPSAFAVLGDLKCN--------------------TSSINDVDTGVPSI
SSEVV--DVTN-----------------------GLGTFYVLD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLLLNGYYPISG------------ATFRNMALKGTRLLSTLWFKPPFLSPF
NDGIFA---------KVKNSRFFKDGVIYSEFP-AITIGSTFVNTS--------------
YSIVVEPHTLL-----INGNLQGLLQISVC------QYTMCEYPHTIC-HPN--LGNQRI
ELWHYDTDVV---SCLYRR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT----
----DTGFVTKF-----LFKLYL---GTVLSHYYVMPLT--CDS------ALSLEYWVTP
LTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTG--------------VYEL
NGYTV--QPVAT----VYRRIPDLPNCDIEAWLNSKTVSSPLNWE-RKIFSNCNFNMGRL
MSFIQADSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTA
VSSCQLYYSLPAANVSVTHYNPSSWNRRYGFNNQSF------GSRGLHDAVYSQQCFNTP
NTYCPCRT----SQCIGG----------AGTGTCPVGTTVRKC--FAAVTNATKCTCWCQ
PDPSTYKGVNAWTCPQSKVSIQPGQHCPGLGLVEDDCS--GN----PCTCKPQAFIGWSS
ETCLQNGRCNIFANFILNDVNSGTTCSTDLQQGNTNITTDV--CVNYDLYGITGQGILIE
V-----NATYYNSWQN-LLYDSSGNLYGFRD----------------YLSNRT----FLI
RS------CYSGRVSAVF--HANSSEPALMFRNLKCSHVFNNTILRQIQLVNY-------
--------------------FDSYLGCVVNAYNNTASAVSTCDLTVGSGY---CVDYV--
---TALRSRRSFTTGYRFTNFEPFAVNL-VNDSIEPVGGL-YEIQIPS------------
------------------------------EFTIGNLEEF------IQTSSPKVTIDCAT
FVCGDYAACRQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVT--LSTKIKDG
INFNV--------DDI-N-----FSPVLGCL---GSEC-------NRASTRSAIEDLLFD
KVKLSDVGFVQA-YNNCT---GGA--EIRDLICVQSYNGIKVLPPLLS------------
---ENQISGYTLAATAASLFPPWTAAA-G----VPFYLNVQYRI------------NGLG
VTMDVLSQNQKLIASAFNNALDAI--------------QEGFDATNSALVK---IQSVVN
ANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKA---------------QIDRLIN
GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG-
NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDIGIS---PKSGYF
INV-----NNS---------WMFTGSGYY-YPEPITQNNVVMMSTC---AVNYTKAPDLM
LNTSTP--NLPDFKEELYQWFKN--QSSVAPDLSL-DY--INVTF-LDLQDEMN------
---------RLQEAIKVLNHSYINLK-----DIGTYEYYVK---WPWYVWLLIGLAGVAM
LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQEFV----IKTSHDD--------
-
>EF424621_AntelopeCoV_US/OH1/2003WD1418_S_23626..27717_4092bp_1363aa
----MFLILLISLPTAFAVIGDLKCT--------------------TVSINDVDTGVPSI
STDTV--DVTN-----------------------GLGTYYVLD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLLLNGYYPTSG------------STYRNMALKGTLLLSTLWFKPPFLSDF
TNGIFA---------KVKNTKVIKDGVMYSEFP-AITIGSTFVNTS--------------
YSVVVQPHTTI-----LGNKLQGFLEISVC------QYTMCEYPNTIC-NPN--LGNQRV
ELWHWDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT----
----DTGVVTKF-----LFNVYL---GTVLSHYYVMPLT--CNS------ALTLEYWVTP
LTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTG--------------VYEL
NGYTV--QPIAD----VYRRIPNLPDCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL
MSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT
ATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAP
TNFCPCKLDG--SLCVGSGSGIDAGSKHTGIGTCPAGTNYLTC------HNAAQCDCLCT
PDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCG--GN----PCSCQPQAFLGWSV
DSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGV--CVNYDLYGITGQGIFVE
V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YLTNRT----FMI
RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNTLSRQLQPINY-------
--------------------FDSYLGCVVNADNSTSSVVQTCDLTVGSGY---CVDYS--
---TKRRSRRSITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------
------------------------------EFTIGNMEEF------IQTSSPKVTIDCSA
FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG
VNFNV--------DDI-N-----FSPVLGCL---GSDC-------NKVSSRSAIEDLLFS
KVKLSDVGFVEA-YNNCT---GGA--EIRDLICVQSYNGIKVLPPLLS------------
---ENQISGYTLAATSASLFPPWSAAA-G----VPFYLNVQYRI------------NGIG
VTMDVLSQNQKLIANAFNNALGAI--------------QEGFDATNSALVK---IQAVVN
ANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQA---------------QIDRLIN
GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG-
NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDRGIA---PKSGYF
VNV-----NNT---------WMFTGSGYY-YPEPITGNNVVVMSTC---AVNYTKAPDVM
LNISTP--NLPDFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQDEMN------
---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLIGFAGVAM
LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQELV----IKTSHED--------
-
>EF424622_GiCoV_US/OH3-TC/2006_S_23625..27701_4077bp_1358aa
----MFLILLISLPTAFAVIGDLKCT--------------------TVSINDVDTGVPSI
STDTV--DVTN-----------------------GLGTYYVLD--------RVY------
------------------------------------------------------------
------------------------------------------------------------
------LNTTLLLNGYYPTSG------------STYRNMALKGTLLLSTLWFKPPFLSDF
TNGIFA---------KVKNTKVIKDGVMYSEFP-AITIGSTFVNTS--------------
YSVVVQPHTTI-----LGNKLQGFLEISVC------QYTMCEYPNTIC-NPN--LGNQRV
ELWHWDTGVV---SCLYKR---NFTYDVN---ADYLYF----HFYQEGGTFYAYFT----
----DTGVVTKF-----LFNVYL---GTVLSHYYVMPLT--CNS------ALTLEYWVTP
LTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTG--------------VYEL
NGYTV--QPIAD----VYRRIPNLPDCNIEAWLNDKSVPSPLNWE-RKTFSNCNFNMSSL
MSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTT
ATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAP
TNFCPCKLDG--SLCVGSGSGIDAGYKHTGIGTCPAGTNYLTC------HNAAQCDCLCT
PDPITSN-----KCPQTKYLVGIGEHCSGLAIKSDHCG--GN----PCSCQPQAFLGWSV
DSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGV--CVNYDLYGITGQGIFVE
V-----NATYYNSWQN-LLYDSNGNLYGFRD----------------YLTNRT----FMI
RS------CYSGRVSAAF--HANSSEPALLFRNIKCNYVFNNTLSRQLQPINY-------
--------------------FDSYLGCVVNADNSTSSVVQTCDLTVGSGY---CVDYS--
---TKRRSRRSITTGYRFTNFEPFTVNS-VNDSLEPVGGL-YEIQIPS------------
------------------------------EFTIGNMEEF------IQTSSPKVTIDCSA
FVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVT--LSTKLKDG
VNFNV--------DDI-N-----FSPVLGCL---GSDC-------NKVSSRSAIEDLLFS
KVKLSDVGFVEA-YNNCT---GGV--EIRDLICVQSYNGIKVLPPLLS------------
---ENQISGYTLAATSASLFPPWSAAA-G----VPFYLNVQYRI------------NGIG
VTMDVLSQNQKLIANAFNNALGAI--------------QEGFDATNSALVK---IQAVVN
ANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQA---------------QIDRLIN
GRLTA------LNAYVSQQLSDSTLVKF-------SAAQAMEKVNECVKSQSSRINFCG-
NGNHIISLVQNAPYGLYFIHFSYV--PTKYVTAKVSPGLCI---AGDRGIA---PKSGYF
VNV-----NNT---------WMFTGSGYY-YPEPITGNNVVVMSTC---AVNYTKAPDVM
LNISTP--NLPDFKEELDQWFKN--QTSVAPDLSL-DY--INVTF-LDLQDEMN------
---------RLQEAIKVLNQSYINLK-----DIGTYEYYVK---WPWYVWLLIGFAGVAM
LVLLFFICCCTGCGTSCFKK------CGGCCDDYTGHQELV----IKTSHED--------
-
>NC_004718_SARS-human_Tor2_S_21492..25259_3768bp_1255aa
-----MFIFLLFLTLTSGSDLDRCTTFD------------------DVQAPNYTQHTSS-
----------------------------------MRGVYYPDE-----------------
------------------------------------------------------------
------------------------------------------------------------
---------IFRSDTLYLTQDLFL---------PFYSNV---TGFHTINHTFGNP-VIPF
KDGIYF---------AATEKSNVVRGWV---------FGSTMNNKS--------------
QSVIIINNSTN-------------VVIRAC------NFELCDNPFFAV-SKP---MGTQT
HTMIFDNAFN----CTFEYISDAFSLDVS---EKSGNFKHLREFVFKNKDGFLYVYKGYQ
PIDVVRDLPSGFNTLKPIFKLPL---GINITNFRAILTA--FSPAQDIWGTSAAAYFVGY
LKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKG--------------IYQT
SNFRV--VPSGD----VVRFPNITNLCPFGEVFNATKFPSVYAWE-RKKISNCVADYSVL
YNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD
FMGCVLAWNTRNIDATSTGN--------YNYKYRYLRHG----KLRPFERDISNVPFSPD
GKPCTPPA----------------------------------------------------
----------------------------------------------LNCYWPLNDYGFYT
TTGIGY---QPYRVVVLSFELLNAPATVCGPKLSTDLIKNQ--CVNFNFNGLTGTGVLTP
S-----SKRFQPF-QQ-FGRDVSDFTDSVRD----------------PKTSEI----LDI
SP------CAFGGVSVITPGTNASSEVAVLYQDVNCTDVS-TAIHADQLTPA--WRIYST
GNN----------------VFQTQAGCLIGAEHVDTSY--ECDIPIGAGI---CASYH--
--------TVSLLRSTSQKSIVAYTMSL-GADSSIAYSNN--TIAIPT------------
------------------------------NFSISITTEV------MPVSMAKTSVDCNM
YICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTR----EVFAQVK--QMYKTPTL
KYF----------GGF-N-----FSQILPDP---LKPT-------K----RSFIEDLLFN
KVTLADAGFMKQ-YGECL---GDI--NARDLICAQKFNGLTVLPPLLT------------
---DDMIAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG
VTQNVLYENQKQIANQFNKAISQI--------------QESLTTTSTALGK---LQDVVN
QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT
GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG-
KGYHLMSFPQAAPHGVVFLHVTYV--PSQERNFTTAPAICH---EGKAYF----PREGVF
VFN-----GTS---------WFITQRNFF-SPQIITTDNTFVSGNC---DVVIGIINNTV
YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQKEID------
---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI
VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT--------
-
>AY304488_SARS-civet_SZ16_S_21477..25244_3768bp_1255aa
-----MFIFLLFLTLTSGSDLDRCTTFD------------------DVQAPNYTQHTSS-
----------------------------------MRGVYYPDE-----------------
------------------------------------------------------------
------------------------------------------------------------
---------IFRSDTLYLTQDLFL---------PFYSNV---TGFHTINHTFDNP-VIPF
KDGIYF---------AATEKSNVVRGWV---------FGSTMNNKS--------------
QSVIIINNSTN-------------VVIRAC------NFELCDNPFFAV-SKP---MGTQT
HTMIFDNAFN----CTFEYISDAFSLDVS---EKSGNFKHLREFVFKNKDGFLYVYKGYQ
PIDVVRDLPSGFNTLKPIFKLPL---GIKITNFRAILTA--FLPAQDTWGTSAAAYFVGY
LKPTKFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKG--------------IYQT
SNFRV--VPSGD----VVRFPNITNLCPFGEVFNATKFPSVYAWE-RKRISNCVADYSVL
YNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD
FMGCVLAWNTRNIDATSTGN--------YNYKYRYLRHG----KLRPFERDISNVPFSPD
GKPCTPPA----------------------------------------------------
----------------------------------------------LNCYWPLKDYGFYT
TSGIGY---QPYRVVVLSFELLNAPATVCGPKLSTDLIKNQ--CVNFNFNGLTGTGVLTP
S-----SKRFQP-FQQ-FGRDVSDITDSVRD----------------PKTSEI----LDI
SP------CSFGGVSVITPGTNASSEVAVLYQDVNCTDVP-TAIHADQLTPA--WRIYST
GNN----------------VFQTQAGCLIGAEHVDTSY--ECDIPIGAGI---CASYH--
--------TVSSLRSTSQKSIVAYTMSL-GADSSIAYSNN--TIAIPT------------
------------------------------NFLISITTEV------MPVSMAKTSVDCNM
YICGDSTECANLLLQYGSFCAQLNRALSGIAVEQDRNTR----EVFAQVK--QMYKTPTL
KDF----------GGF-N-----FSQILPDP---LKPT-------K----RSFIEDLLFN
KVTLADAGFMKQ-YGECL---GDI--NARDLICAQKFNGLTVLPPLLT------------
---DDMIAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG
VAQNVLYENQKQIANQFNKAISQI--------------QESLTTTSTALGK---LQDVVN
QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT
GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG-
KGYHLMSFPQAAPHGVVFLHVTYV--PSQERNFTTAPAICH---EGKAYF----PREGVF
VFN-----GTS---------WFITQRNFF-SPQIITTDNTFVSGNC---DVVIGIINNTV
YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQEEID------
---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI
VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT--------
-
>NC_009694_SARS-bat_HKU3-1_S_21471..25199_3729bp_1242aa
-----MKILIFAFLANLAKAQEGCGIIS------------------RKPQPKMAQVSSS-
----------------------------------RRGVYYNDD-----------------
------------------------------------------------------------
------------------------------------------------------------
---------IFRSDVLHLTQDYFL-------PFDSNLTQYFSLNVDSDRYTYFDNPILDF
GDGVYF---------AATEKSNVIRGWI---------FGSSFDNTT--------------
QSAVIVNNSTH-------------IIIRVC------NFNLCKEPMYTV-SRG-----TQQ
NAWVYQSAFN----CTYDRVEKSFQLDTT---PKTGNFKDLREYVFKNRDGFLSVYQTYT
AVNLPRGLPTGFSVLKPILKLPF---GINITSYRVVMAM--FSQTTSNFLPESAAYYVGN
LKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKG--------------IYQT
SNFRV--SPTQE----VIRFPNITNRCPFDKVFNATRFPNVYAWE-RTKISDCVADYTVL
YNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDD
FTGCVIAWNTA----------------KHDTGNYYYRSH----------RKTKLKPFERD
LSSDDGNG----------------------------------------------------
-------------------------------------------------VYTLSTYDFNP
NVPVAY---QATRVVVLSFELLNAPATVCGPKLSTELVKNQ--CVNFNFNGLKGTGVLTS
S-----SKRFQSF-QQ-FGRDTSDFTDSVRD----------------PQTLEI----LDI
SP------CSFGGVSVITPGTNASSEVAVLYQDVNCTDVP-TAIRADQLTPA--WRVYST
GVN----------------VFQTQAGCLIGAEHVNASY--ECDIPIGAGI---CASYH--
--------TASVLRSTGQKSIVAYTMSL-GAENSIAYANN--SIAIPT------------
------------------------------NFSISVTTEV------MPVSMAKTAVDCTM
YICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQ----EVFAQVK--QMYKTPAI
KDF----------GGF-N-----FSQILPDP---SKPT-------K----RSFIEDLLFN
KVTLADAGFMKQ-YGDCL---GDV--SARDLICAQKFNGLTVLPPLLT------------
---DEMVAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG
VTQNVLYENQKLIANQFNSAIGKI--------------QESLSSTASALGK---LQDVVN
QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT
GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG-
KGYHLMSFPQSAPHGVVFLHVTYV--PSQEKNFTTAPAICH---EGKAYF----PREGVF
VSN-----GTS---------WFITQRNFY-SPQLITTDNTFVSGNC---DVVIGIINNTV
YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQKEID------
---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI
VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT--------
-
>AY545919_SARS-badger_CFB/SZ/94/03_S_21471..25238_3768bp_1255aa
-----MFIFLLFLTLTSGSDLDRCTTFD------------------DVQAPNYTQHTSS-
----------------------------------MRGVYYPDE-----------------
------------------------------------------------------------
------------------------------------------------------------
---------IFRSDTLYLTQDLFL---------PFYSNV---TGFHTINHTFDNP-VIPF
KDGIYF---------ATTEKSNVVRGWV---------FGSTMDNKS--------------
QSVIIINNSTN-------------VVIRAC------NFELCDNPFFVV-SKP---MGTRT
HTMIFDNAFN----CTFEYISDAFSLDVS---EKSGNFKHLREFVFKNKDGFLYVYKGYQ
PIDVVRDLPSGFNTLKPIFKLPL---GINITNFRAILTA--FSPAQDTWGTSAAAYFVGY
LKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKG--------------IYQT
SNFRV--VPSGD----VVRFPNITNLCPFGEVFNATKFPSVYAWE-RKRISNCVADYSVL
YNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDD
FMGCVLAWNTRNIDATSTGN--------YNYKYRYLRHG----KLRPFERDISNVPYSPD
GKPCTPPA----------------------------------------------------
----------------------------------------------PNCYWPLRGYGFYT
TSGIGY---QPYRVVVLSFELLNAPATVCGPKLSTDLIKNQ--CVNFNFNGLTGTGVLTP
S-----SKRFQPF-QQ-FGRDVSDFTDSVRD----------------PKTSEI----LDI
SP------CSFGGVSVITPGTNASSEVAVLYQDVNCTDVS-TLIHAEQLTPA--WRIYST
GNN----------------VFQTQAGCLIGAEHVDTSY--ECDIPIGAGI---CASYH--
--------TVSSLRSTSQKSIVAYTMSL-GADSSIAYSNN--TIAIPT------------
------------------------------NFSISITTEV------MPVSMAKTSVDCNM
YICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTR----EVFVQVK--QMYKTPTL
KDF----------GGF-N-----FSQILPDP---LKPT-------K----RSFIEDLLFN
KVTLADAGFMKQ-YGECL---GDI--NARDLICAQKFNGLTVLPPLLT------------
---DDMIAAYTAALVSGTATAGWTFGA-GAALQIPFAMQMAYRF------------NGIG
VTQNVLYENQKQIANQFNKAISQI--------------QESLTTTSTALGK---LQDVVN
QNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEV---------------QIDRLIT
GRLQS------LQTYVTQQLIRAAEIRA-------SANLAATKMSECVLGQSKRVDFCG-
KGYHLMSFPQAAPHGVVFLHVTYV--PSQERNFTTAPAICH---EGKAYF----PREGVF
VFN-----GTS---------WFITQRNFF-SPQIITTDNTFVSGNC---DVVIGIINNTV
YDPLQP--ELDSFKEELDKYFKN----HTSPDVDLGDISGINASV-VNIQEEID------
---------RLNEVAKNLNESLIDLQ-----ELGKYEQYIK---WPWYVWLGFIAGLIAI
VMVTILLCCMTSCCSCLKGACS----CGSCCKFDEDDSEPVLK--GVKLHYT--------
-
>NC_009019_Bat-CoV-HKU4_B04f HKU41_S_21570..25628_4059bp_1352aa
----MTLLMCLLMSLLIFVRGCDSQFVD------------------MSPASNTSECLESQ
VDAAAFSKLMWPYPIDPSK---------------VDGIIYPLG--------RTY------
------------------------------------------------------------
------------------------------------------------------------
------SNITLAYTGLFPLQG----DLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDF
DNGFVVRIGAAANSTGTIVISPSVNTKIKKAYP-AFILGSSLTNTSAG------QPLYAN
YSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVSYFIYETVHNDC-QSTINRNASLN
SFKSFFDLVN----CTFFN---SWDITAD---ETKEWF----GITQDTQGVHLYSSR---
----KGDLYGGN--MFRFATLPV---YEGIKYYTVIPRS--FRSKA-NKREAWAAFYVYK
LHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTG--------------VYSV
SSYEA--SATG-----TFIEQPNATECDFSP-MLTGVAPQVYNFK-RLVFSNCNYNLTKL
LSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFA
NPTCRVMASVLANVTITKPH-------AYGYISKCSRLT-------GANQDVETPLYINP
GEYSICRD----------------------------------------------------
-------------------FSPGGFSEDGQVFKRTL----------TQFEGGGLLIGVGT
RVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQN
C-----TAVGVKQ-QR-FVYDSFDNLVGYY-----------------SDDGNY----YCV
RP------CVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSN
I------------------PLQTAVGCVIGLSNN-SLVVSDCKLPLGQSL---CAVPP--
---------VSTFRSYSASQFQLAVLNYTSPIVVTPINSSGFTAAIPT------------
------------------------------NFSFSVTQEY------IETSIQKVTVDCKQ
YVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVY----SLYSNIK--TTSTQTLE
YGLN---------GDF-N-----LT-LLQVP---QIGG-------SSSSYRSAIEDLLFD
KVTIADPGYMQG-YDDCMK-QGPQ--SARDLICAQYVSGYKVLPPLYD------------
---PNMEAAYTSSLLGSIAGAGWTAGL-SSFAAIPFAQSMFYRL------------NGVG
ITQQVLSENQKLIANKFNQALGAM--------------QTGFTTSNLAFSK---VQDAVN
ANAQALSKLASELSNTFGAISSSISDILARLDTVEQDA---------------QIDRLIN
GRLIS------LNAFVSQQLVRSETAAR-------SAQLASDKVNECVKSQSKRNGFCG-
SGTHIVSFVVNAPNGFYFFHVGYV--PTNYTNVTAAYGLCNNN-NPPLCIA---PIDGYF
ITN-----QTTTYSVDTE--WYYTGSSFY-KPEPITQANSRYVSS----DVKFDKLENNL
PPPLLENSTDVDFKDELEEFFKN--VTSHGPNFA--EISKINTTL-LDLSDEMA------
---------MLQEVVKQLNDSYIDLK-----ELGNYTYYNK---WPWYVWLGFIAGLVAL
LLCVFFLLCCTGCGTSCLGKMK----CKNCCDSYEEYD-------VEKIHVH--------
-
>NC_009020_Bat-CoV-HKU5_LMH3f HKU51_S_21735..25793_4059bp_1352aa
---MIRSVLVLMCSLTFIGNLTRGQSVDMGHN--------------GTGSCLDSQVQPDY
FESV---HTTWPMPIDTSK---------------AEGVIYPNG--------KSY------
------------------------------------------------------------
------------------------------------------------------------
------SNITLTYTGLYPKAN----DLGKQYLFSDGHSA--PGRLNNLFVSNYSSQVESF
DDGFVVRIGAAANKTGTTVISQSTFKPIKKIYP-AFLLGHSVGNYTPS----NRTGRYLN
HTLVILPDGCGTILHAFYCVLHPRTQQNCAGETNFKSLSLWDTPASDCVSGSYNQEATLG
AFKVYFDLIN----CTFRY---NYTITED---ENAEWF----GITQDTQGVHLYSSR---
----KENVFRNN--MFHFATLPV---YQKILYYTVIPRS---IRSPFNDRKAWAAFYIYK
LHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETG--------------VYSV
SSFEA--SPRG-----EFIEQATTQECDFTP-MLTGTPPPIYNFK-RLVFTNCNYNLTKL
LSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFS
NPTCRVLATVP------QNLTTITKPSNYAYLTECYKTS-------AYGKNY---LYNAP
GAYTPCLS----------------------------------------------------
-------------------LASRGFSTK------------------YQSHSDGELTTTGY
IYPVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSIEDKLDVCVEYSLHGITGRGVFHN
C-----TSVGLR-NQR-FVYDTFDNLVGYH-----------------SDNGNY----YCV
RP------CVSVPVSVIY--DKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTP
G------------------PLQTTVGCAMGFINS-SMVVDECQLPLGQSL---CAIPP--
----TTSSRVRRATSGASDVFQIATLNFTSPLTLAPINSTGFVVAVPT------------
------------------------------NFTFGVTQEF------IETTIQKITVDCKQ
YVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIA----NLFSSIK--TQNTQPLQ
AGLN---------GDF-N-----LT-MLQIP---QVTT-------GERKYRSTIEDLLFN
KVTIADPGYMQG-YDECMQ-QGPQ--SARDLICAQYVAGYKVLPPLYD------------
---PYMEAAYTSSLLGSIAGASWTAGL-SSFAAIPFAQSIFYRL------------NGVG
ITQQVLSENQKIIANKFNQALGAM--------------QTGFTTTNLAFNK---VQDAVN
ANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEA---------------QIDRLIN
GRLTS------LNAFVAQQLVRTEAAAR-------SAQLAQDKVNECVKSQSKRNGFCG-
TGTHIVSFAINAPNGLYFFHVGYQ--PTSHVNATAAYGLCNTE-NPQKCIA---PIDGYF
VLN-----QTTSTVADSDQQWYYTGSSFF-HPEPITEANSKYVSM----DVKFENLTNRL
PPPLLSNSTDLDFKEELEEFFKN--VSSQGPNFQ--EISKINTTL-LNLNTELM------
---------VLSEVVKQLNESYIDLK-----ELGNYTFYQK---WPWYIWLGFIAGLVAL
ALCVFFILCCTGCGTSCLGKLK----CNRCCDSYDEYE-------VEKIHVH--------
-
>NC_009021_Bat-CoV-HKU9_BF_005I HKU91_S_20974..24798_3825bp_1274aa
------MLLILVLGVSLAAASRPECFNPR-----------------FTLTPLNHTLNYTS
IKAK------------------------------VSNVLLPDP-----------------
------------------------------------------------------------
------------------------------------------------------------
---------YIAYSGQTLRQNLFMADMSN----TILYPVTPPANGANGGFIYNTS-IIPV
SAGLFV---------NTWMYRQPASSRAYCQEPFGVAFGDTFENDRIA------------
-ILIMAPDNLGSWSAVAPRNQTNIYLLVCS------NATLCINPGFNR-WGP---AGSFI
APDALVDHSN---SCFVNN---TFSVNIS---TSRISL----AFLFKDGDLLIYHSGWLP
TSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNAIDKGDGMCTNFDVNLHVAH
LINRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDPPTG--------------VYPL
SRYRA--QVAG-----FVRVTQRGSYCT-PPYSVLQDPPQPVVWR-RYMLYDCVFDFTVV
VDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALPDN
FYGCLHAFYLN-------------------------STA-------PYAVANRFPIKPGG
RQSNSAFI----------------------------------------------------
----------------------------------------------DTVINAAHYSPFSY
VYGLA-------VITLKPAAGSKLVCPV---ANDTVVITDR--CVQYNLYGYTGTGVLSK
N-----TSLVIPDGKV-FTASSTGTIIGVS------------------INSTT----YSI
MP------CVTVPVSVGY---HPNFERALLFNGLSCSQRS----RAVTEPVSVLWSASAT
AQD----------------AFDTPSGCVVNVELRNTTIVNTCAMPIGNSL---CFING--
------SIATANADSLPRLQLVNYDPLY-DNSTATPMTPV-YWVKVPT------------
------------------------------NFTLSATEEY------IQTTAPKITIDCAR
YLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDSALL----SLVKELSI-NTRDEVTT
FSFD---------GDY-N-----FTGLMGCL---GPNC-------GATTYRSAFSDLLYD
KVRITDPGFMQS-YQKCIDSQWGG--SIRDLLCTQTYNGIAVLPPIVS------------
---PAMQALYTSLLVGAVASSGYTFGI-TSAGVIPFATQLQFRL------------NGIG
VTTQVLVENQKLIASSFNNALVNI--------------QKGFTETSIALSK---MQDVIN
QHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANA---------------EVDRLIN
GRMMV------LNTYVTQLLIQASEAKA-------QNALAAQKISECVKAQSLRNDFCG-
NGTHVLSIPQLAPNGVLFIHYAYT--PTEYAFVQTSAGLCH---NGTGYA----PRQGMF
VLP-----NNTNM-------WHFTTMQFY-NPVNISASNTQVLTSC---SVNYTSVNYTV
LEPSVP--GDYDFQKEFDKFYKN---LSTIFNNTF-NPNDFNFST-VDVTAQIK------
---------SLHDVVNQLNQSFIDLK-----KLNVYEKTIK---WPWYVWLAMIAGIVGL
VLAVIMLMCMTNCCSCFKGMCD----CRRCCGSYDSYDDVYPAVRVNKKRTV--------
-
>NC_001451_IBV_Beaudette_S_20368..23856_3489bp_1162aa
MLVTPLLLVTLLCALCSAVLYDSSSYVYYYQ---------------SAFRP---------
----------------------------------PSGWHLQGG-----------------
------------------------------------------------------------
------------------------------------------------------------
------AYAVVNISSEFNNAG--------------------------------------S
SSGCTV---------GIIHGGRVVNASSIAMTA---------------------------
------PSSGM-------------------------AWSSSQFCTAHC-NFS---DTTVF
VTHCYKH--G---GC-------PLTGMLQ---QNLIRV-----SAMKNGQLFYNLTVSVA
----KYPTFRSFQCVNNLTSVYLNGDLVYTSNETIDVTS----AGVYFKAGGPITYKVMR
EVK---ALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDG--------------FYPF
TNSSLVKQKFI-----VYRENSVNTTCTLHNFIFHNET-----------GANPNPSG---
-----VQNIQTYQTKTAQSGYYNFNFSFLSSFVYKES----------------NFMYGSY
HPSCKFRLETI------NNG--------LWFNSLSVSIA-----YGPLQGGCKQSVFKGR
ATCCYAYS----------------------------------------------------
-----------------------------YGGPSLCKGVYSGELDHNFECGLLVYVTKSG
GSRIQ----------------TATEPPVITQNNYNNITLNT--CVDYNIYGRTGQGFITN
VTDSAVSYNYLADAGL-AILDTSGSIDIF------------------VVQGEYGLNYYKV
NP------CEDVNQQFVV-------SGGKLVGILTSRNET-----GSQLLENQFYIKITN
GTR----------------RFRRSI----------TENVANCPYVSYGKF---CIKPD--
------------------GSIATIVPKQ-LEQFVAPLFNVTENVLIPN------------
------------------------------SFNLTVTDEY------IQTRMDKVQINCLQ
YVCGSSLDCRKLFQQYGPVCDNILSVVNSVGQKEDMELL----NFYSSTKP-AGFNTPVL
SNVST--------GEF-N-----ISLLLTNP---SSRR-------K----RSLIEDLLFT
SVESVGLPTNDA-YKNCT---AGPLGFFKDLACAREYNGLLVLPPIIT------------
---AEMQALYTSSLVASMAFGGITAAG-A----IPFATQLQARI------------NHLG
ITQSLLLKNQEKIAASFNKAIGHM--------------QEGFRSTSLALQQ---IQDVVS
KQSAILTETMASLNKNFGAISSVIQEIYQQFDAIQANA---------------QVDRLIT
GRLSS------LSVLASAKQAEYIRVSQ-------QRELATQKINECVKSQSIRYSFCG-
NGRHVLTIPQNAPNGIVFIHFSYT--PDSFVNVTAIVGFCVKPANASQYAIVPANGRGIF
IQV-----NGS---------YYITARDMY-MPRAITAGDVVTLTSC---QANYVSVNKTV
ITTFVDN-DDFDFNDELSKWWND--TKHELPDFDK-FN--YTVPI-LDIDSEID------
---------RIQGVIQGLNDSLIDLE-----KLSILKTYIK---WPWYVWLAIAFATIIF
ILILGWVFFMTGCCGCCCGCFGIMPLMSKC----GKKSSYYTT--FDNDVVTEQYRPKKS
V
>AY646283_IBV-partridge_Partridge/GD/S14/2003_S_20200..23697_3498bp_1165aa
MLGKSLFLVTILCALCSANLFDSANNYVYYYQ--------------SAFRP---------
----------------------------------PNGWHLQGG-----------------
------------------------------------------------------------
------------------------------------------------------------
------AYAVVNSTNYTNNAG--------------------------------------S
ANECTI---------GVIKDVYNQSAAAIAMTA---------------------------
------PLQGM-------------------------AWSKSQFCSAHC-NFS---EITVF
VTHCYSSGSG---SC-------PITGMIP---QGHIRI-----SAMKNGSLFYNLTVSVS
----KYPNFKSFQCVNNFTSVYLNGDLVFTSNTTTDVKS----AGVYFKAGGPVNYNIMK
EFK---VLAYFVNGTVQDVILCDDTPRGLLACQYNNGNFSDG--------------FYPF
TNSSLVKEKFI-----VYRENSVNTTLTLTNYTFYNVTNAS-----------PNRGG---
-----VQSIPTYQTQTAQSGYYNFNLSFLSSFVYKES----------------NYMYGSY
HPACNFRLETI------NNG--------LWFNSLSVSLA-----YGPLQGGCKQSVFSSR
ATCCYAYS----------------------------------------------------
-----------------------------YNGPRACKGVYAGELLQNFECGLLVYVTKSD
GSRIQ----------------TATVPPVVTQHNYNNITLNT--CVDYNIYGRVGRGFITN
VTDSSSSYNYLADAGL-AVLDTSGAIDIF------------------VVQGEHGLNYYKV
NP------CEDVNQQFVV-------SGGKLVGILTSRNAT-----GSQPLENQFYIKLTK
ETR----------------RFRRST----------SDNVTSCPYVSYGRF---CIQPD--
------------------GSIKQIVPQE-LENFVAPLLNVTENVLIPS------------
------------------------------SFNLTVTDEY------IQTRMDKVQINCLQ
YVCGNPLDCRKLFQQYGPVCDNILSIVNSVGQKEDMELL----TFYSSTKP-AGYNAPVF
SNIST--------GDF-N-----ISLLLTPP---SSPS-------G----RSFIEDLLFT
SVETVGLPTDAE-YKKCT---AGPLGTLKDLICAREYNGLLVLPPIIT------------
---ADMQTMYTASLVGAMAFGGITAAG-A----IPFATQIQARI------------NHLG
ITQSLLLKNQEKIAASFNKAIGHM--------------QEGFRSTSLALQQ---VQDVVN
KQSAILTETMNSLNKNFGAISSVIQDIYAQLDAIQADA---------------QVDRLIT
GRLSS------LSVLASAKQSEYIRVSQ-------QRELATQKINECVKSQSNRYGFCG-
SGRHVLSIPQNAPNGIVFIHFTYT--PQSFVNVTAIVGFCVQPANASQYAIVPVNGRGIF
IQV-----NGS---------YYITARDMY-MPRDITAGDIVTLTSC---QANYVNVNKTV
ITTFVED-DDFDFDDELSKWWND--TEHELPDFDD-FN--YTVPI-LNISGEID------
---------RIQGVIQGLNDSLIDLE-----ELSIIKTYIK---WPWYVWLAIGFAVIIF
ILILGWVFFMTGCCGCCCGCFGIIPLMSKC----GKKSSYYTT--FDNDVVTEQYRPKKS
V
>AY641576_IBV-peafowl_Peafowl/GD/KQ6/2003_S_20311..23772_3462bp_1153aa
MLVTPLLLVTLLCVLCSAALYDSSSYVYYYQ---------------SAFRP---------
----------------------------------PNGWHLHGG-----------------
------------------------------------------------------------
------------------------------------------------------------
------AYAVVNISSESNNAG--------------------------------------S
SPGCIV---------GTIHGGRVVNASSIAMTA---------------------------
------PSSGM-------------------------AWSSSQFCTAHC-NFS---DTTVF
VTHCYRY--D---GC-------PITGMLQ---KNFIRV-----SAMKNGQLFYNLTVSVA
----KYPTFRSFQCVNNLTSVHLNGDLVYTSNETTDVTS----AGVYFKAGGPITYKVMR
EVK---ALAYFVNGTAQDVILCDGSPRGLLACQYNTGNFSDG--------------FYPF
INSSLVKQKFI-----VYRENSVNTTFTLHNFTFHNET-----------GANPNPSG---
-----VQNIQTYQTQTAQSGYYNFNFSFLSSFVYKES----------------NFMYGSY
HPSCNFRLETI------NNG--------LWFNSLSVSIA-----YGPLQGGCKQSVFSGR
ATCCYAYS----------------------------------------------------
-----------------------------YGGPSLCKGVYSGELGLNFECGLLVYVTKSG
GSRIQ----------------TATEPPVITRHNYNNITLNT--CVDYNIYGRTGQGFITN
VTDSAVSYNYLADAGL-AILDTSGSIDIF------------------VVQGEYGLTYYKV
NP------CEDVNQQFVV-------SGGKLVGILTSRNET-----GSQLLENQFYIKITN
GTR----------------RFRRSI----------TENVANCPYVSYGKF---CIKPD--
------------------GSIATIVPKQ-LEQFVAPLLNVTENVLIPN------------
------------------------------SFNLTVTDEY------IQTRMDKVQINCLQ
YVCGNSLDCRDLFRQYGHVCDNILSVVNSIGQKEDMELL----NFYSSTKP-VGFNTPFL
SNVST--------GEF-N-----ISLLLTTP---SSPR-------R----RSFIEDLLFT
SVESVGLPTDDA-YKNCT---AGPLGFLKDLACAREYNGLLVLPPIIT------------
---AEMQTLYTSSLVASMAFGGITAAG-A----IPFATQLQARI------------NHLG
ITQSLLLKNQEKIAASFNKAIGRM--------------QEGFRSTSLALQQ---IQDVVN
KQSAILTETMASLNKNFGAISSMIQEIYQQLDAIQANA---------------QVDRLIT
GRLSS------LSVLASAKQAEHTRVSQ-------QRELATQKINECVKSQSIRYSFCG-
NGRHVLTIPQNAPNGIVFIHFSYT--PDSFVNVTAIVGFCVKPANASQYAIVPANGRGIF
IQV-----NGS---------YYITARDMY-MPRAITAGDIVTLTSC---QANYVSVNKTV
ITTFVDN-DDFDFNDELSKWWND--TKHELPDFDK-FN--YTVSI-LDIDSEID------
---------RIQGVIQGLNDSLIDLE-----KLSILKTYIK---WPWYVWLAIAFATIIF
ILILGWVFFMTGCCGCCCGCFGIMPLMSKC----GKKSSYYTT--FDNDVVT--------
-
>NC_007447_BoTV-1_Breda 1_S_20975..25729_4755bp_1584aa
------MFLCFCTAAILCLWINSGGAVVVSNETLVVCEPVSYPYSLQVLRSFSQRVNLRT
KRAVI--DDAWSFAYQISTNSLNVNGWYVNFTS-PLGWSYPNG--------KLFGIVLGS
DAMMRASQSFF-------------------------------------------------
------------------------------------------------------------
------TYDVISYVGQRPNLDCQINDLVNGGLDSWYSTV--RVDNCGNYPCYG-----GG
KPGCSI---------GRPYMANGVCTRVLSTTQ-S--PGIQYEIYSGQDYAVYQITPYTQ
YTLTMPSGTPG------YCQQTP-LYVECG------SWTPYRVHAYGC-DKA-TQGCKYT
ISSDWVVAFKSKITAVTLPPDLKVPVVQK---VTKRLGVTSPDYFWLIKQAYQYLS----
----QAAISPNYALFSALSNSLYQQSLVLTDLCYGSPFF--VAQECYNNALYLPDAVFTT
LFSILFNWDYQVNYPVKNVLQTNETFLQLPTTGYLGQTVSQGRMLNLFKDAIVFLDFYDT
KFYRTNDGPGGDIFAVVVKQVPVIAYSAFRIEQQTGDYLAVKCKD-VTQATLAPHPSRVV
LLARHMSMWSIAAANSTTIYCPIYTLTQFGSLDISTSWYFHTLAQPSGPIHQVSMPLLST
AAAGVYMHPMV----------------EHWVTLLTQTQD-------VYQPSMFNMGVNKS
VTLTTQLQ----------------------------------------------------
-------------------------------------------------AYAQVYTAWFL
S--ILYTRLPESRRLTLGAQLTPFVQALLSFKQADIDATDVDTVARYNVLSLMWGRKYAA
V-----SYNQLPEWSYPLFKGGVGDSMWFRKEISCSSQNPSTPSHFPFIAGYLDFLDYKY
IPKYKGVACPTTMVAPTL--LQVYETPQLFVIIVQCVSTT-YSWYPGLQTPHTIYRSYKL
GTICVLVPYSSPTSVYSSFGFFSQSALTIPTVQTTDDILPGCVGFVQDGVFTPCHPSGCP
VRNSYDNYIICPGSSASNYTLRNYHRTT-IPVMNVPIDEVPLQLEIPTVSLTSYELKQSE
SVLLQDIEGGIVVDHNTGSIWYPGGQAYDVSFYVSVIIRYAPPKLELPSTLANFT-SCLD
YICFGNQQCRGEAQTFCTSMDYFEQVFNKSLTSLIIALQ----DLHYVLK--LVLPETTL
ELTEDTRRRRRAVDEFSD-----TISLLSES---FERF-------MSPASQAYMANMMWW
DEAFDGISLPQR-----T---GSILSRTPSLSSTSSWRSYSSRTPLISNVKTPKTTFNVK
LSMPKLPKASTLSTIGSVLSSGLSIASLG---LSIFSIIEDRRVTELTQQQIMALENQIT
ILTDYTEKNFKEIQSSLNTLGQQVQDFSQQVTLSLQQLSNGLEQITQQLDKSIYYVMAVQ
QYATYMSSLVNQLNELSQAVYKTQDMYITCIHSLQSGVLSPNCITPSQMFHLYQVAKNLS
GECQPIFSEREISRFYSLPLVTDAMVHNDTYWFSWSIPITCSNILGSVYKVQP--GYIV-
NPHHPTSLQYDVPTHVVTSNAGALIFDEHYCDRYNQVYLCT---KSAFDLAESSYLTMLY
SNQTDNSSLTFHPAPRPDPCVYLSASALYCYYSDECHQCVIAVGNCTNRTVTYENYTYPI
MDPQCRGFDQITISSPIA-IGADFTALPSRPPLPL-HLSYVNVTFNVTLPNGVNWTDLVL
DYSFKDKVYEISKNITQLHEQILQVSNWASGWFQRLRDFLYGLIPAWITWLTLGFSLFSI
LISGVNIILFFEMNG--------------------------------KVKKS--------
-