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Influenza A Matrix Protein 1 (M1)

Sequence Alignments
Data compiled from the Influenza Research Database

Virus Host

Virus Strain

Consensus Sequence

All Seq. Alignment

Variance Analysis

Avian H1N1 Avian M1 consensus Avian M1 alignment Avian M1 variance

Canine H3N8 Canine M1 consensus Canine M1 alignment Canine M1 variance

Chicken H5N1 Chicken M1 consensus Chicken M1 alignment Chicken M1 variance

Dog H3N8 Dog M1 consensus Dog M1 alignment Dog M1 variance

Duck H5N1 Duck M1 consensus Duck M1 alignment Duck M1 variance

Equine H3N8 Equine M1 consensus Equine M1 alignment Equine M1 variance

Goose H5N1 Goose M1 consensus Goose M1 alignment Goose M1 variance

Human H1N1 Human M1 consensus Human M1 alignment Human M1 variance

Mallard H3N8 Mallard M1 consensus Mallard M1 alignment Mallard M1 variance

Pandemic H1N1 Pandemic M1 consensus Pandemic M1 alignment Pandemic M1 variance

Swine H1N1 Swine M1 consensus Swine M1 alignment Swine M1 variance

Structures

M1 N-term domain H1N1 3MD2, PDBsum 3MD2
M1 N-term domain H5N1 2Z16, PDBsum 2Z16
M1 NEP-binding domain 1PD3, PDBsum 1PD3
M1 N-term domain 1EA3, PDBsum 1EA3
M1 N-term domain pH 4.0 1AA7, PDBsum 1AA7

Domains and Families

Protein-protein interactions

Virus-virus
Fill soon.
Virus-host

Virus Strain

M1 Sequence

Host

Host Protein

Reference

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens GNB2L1 Reinhardt,2000

Influenza A virus (A/WSN/1933 TS61(H1N1)) ABF47956 Homo sapiens VPS28 Hui,2006

Influenza A virus (A/WSN/1933 TS61(H1N1)) ABF47956 Homo sapiens CDC42 Hui,2006

Influenza A virus (A/WSN/1933(H1N1)) AAA43252 Homo sapiens GNB2L1 Reinhardt,2000

Influenza A virus (A/swine/Wisconsin/1/1967(H1N1)) ABV82585 Homo sapiens GNB2L1 Reinhardt,2000

Influenza A virus (A/chicken/Rostock/45/1934(H7N1)) ABI85058 Homo sapiens GNB2L1 Reinhardt,2000

Influenza A virus (A/WSN/1933(H1N1)) AAA43252 Homo sapiens HSPA8 Watanabe,2006

Influenza A virus (A/WSN/1933 TS61(H1N1)) ABF47956 Homo sapiens C1QA Zhang,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens DVL2 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens DVL3 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens EXOSC8 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens LNX2 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens MEOX2 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens RP5-964H19.3 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens PRKRA Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens SDCBP2 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens STAU1 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens TFCP2 Shapira,2009

Influenza A virus (A/Puerto Rico/8/34(H1N1)) NP_040978 Homo sapiens ZMAT4 Shapira,2009

Influenza A virus (A/udorn/1972(H3N2)) ABD79033 Homo sapiens DVL2 Shapira,2009

Influenza A virus (A/udorn/1972(H3N2)) ABD79033 Homo sapiens DVL3 Shapira,2009

Influenza A virus (A/udorn/1972(H3N2)) ABD79033 Homo sapiens LNX2 Shapira,2009

Influenza A virus (A/udorn/1972(H3N2)) ABD79033 Homo sapiens MEOX2 Shapira,2009

Influenza A virus (A/udorn/1972(H3N2)) ABD79033 Homo sapiens SDCBP2 Shapira,2009

Virus Host	Virus Strain	Consensus Sequence	All Seq. Alignment	Variance Analysis
Avian	H1N1	Avian M1 consensus	Avian M1 alignment	Avian M1 variance
Canine	H3N8	Canine M1 consensus	Canine M1 alignment	Canine M1 variance
Chicken	H5N1	Chicken M1 consensus	Chicken M1 alignment	Chicken M1 variance
Dog	H3N8	Dog M1 consensus	Dog M1 alignment	Dog M1 variance
Duck	H5N1	Duck M1 consensus	Duck M1 alignment	Duck M1 variance
Equine	H3N8	Equine M1 consensus	Equine M1 alignment	Equine M1 variance
Goose	H5N1	Goose M1 consensus	Goose M1 alignment	Goose M1 variance
Human	H1N1	Human M1 consensus	Human M1 alignment	Human M1 variance
Mallard	H3N8	Mallard M1 consensus	Mallard M1 alignment	Mallard M1 variance
Pandemic	H1N1	Pandemic M1 consensus	Pandemic M1 alignment	Pandemic M1 variance
Swine	H1N1	Swine M1 consensus	Swine M1 alignment	Swine M1 variance

Virus Strain	M1 Sequence	Host	Host Protein	Reference
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	GNB2L1	Reinhardt,2000
Influenza A virus (A/WSN/1933 TS61(H1N1))	ABF47956	Homo sapiens	VPS28	Hui,2006
Influenza A virus (A/WSN/1933 TS61(H1N1))	ABF47956	Homo sapiens	CDC42	Hui,2006
Influenza A virus (A/WSN/1933(H1N1))	AAA43252	Homo sapiens	GNB2L1	Reinhardt,2000
Influenza A virus (A/swine/Wisconsin/1/1967(H1N1))	ABV82585	Homo sapiens	GNB2L1	Reinhardt,2000
Influenza A virus (A/chicken/Rostock/45/1934(H7N1))	ABI85058	Homo sapiens	GNB2L1	Reinhardt,2000
Influenza A virus (A/WSN/1933(H1N1))	AAA43252	Homo sapiens	HSPA8	Watanabe,2006
Influenza A virus (A/WSN/1933 TS61(H1N1))	ABF47956	Homo sapiens	C1QA	Zhang,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	DVL2	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	DVL3	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	EXOSC8	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	LNX2	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	MEOX2	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	RP5-964H19.3	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	PRKRA	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	SDCBP2	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	STAU1	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	TFCP2	Shapira,2009
Influenza A virus (A/Puerto Rico/8/34(H1N1))	NP_040978	Homo sapiens	ZMAT4	Shapira,2009
Influenza A virus (A/udorn/1972(H3N2))	ABD79033	Homo sapiens	DVL2	Shapira,2009
Influenza A virus (A/udorn/1972(H3N2))	ABD79033	Homo sapiens	DVL3	Shapira,2009
Influenza A virus (A/udorn/1972(H3N2))	ABD79033	Homo sapiens	LNX2	Shapira,2009
Influenza A virus (A/udorn/1972(H3N2))	ABD79033	Homo sapiens	MEOX2	Shapira,2009
Influenza A virus (A/udorn/1972(H3N2))	ABD79033	Homo sapiens	SDCBP2	Shapira,2009